Contig 007887:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS068E01Sequence619007887 (2)ref|XP_009791876.1|3e-12PREDICTED: translocase of chloroplast 90, chloroplastic [Nicotiana sylvestris]
JMSF023I01Sequence679007887 (2)ref|XP_009791876.1|5e-12PREDICTED: translocase of chloroplast 90, chloroplastic [Nicotiana sylvestris]778023530ref|XP_009791876.1|9e-92PREDICTED: translocase of chloroplast 90, chloroplastic [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS068E01+                                                  CAACAACATTGCTACTATACT
JMSF023I01+                                                  CAACAACATTGCTACTATACT
                      ____________________________________________________________
consensus                                                    CAACAACATTGCTACTATACT
 
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JMFS068E01+           GACAAGATATTTCATCGAAGACTTGCTCTGAAGGCAACTGGTTGTGATTTTCCGGATTAT
JMSF023I01+           GACAAGATATTTCATCGANGACTTGCTCTGAAGGCAACTGGTTGTGATTTTCCGGATTAT
                      ____________________________________________________________
consensus             GACAAGATATTTCATCGAAGACTTGCTCTGAAGGCAACTGGTTGTGATTTTCCGGATTAT
 
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JMFS068E01+           TGTTGGAAGAATAAGTATTGGAAGATGCCGGTAACATAGCCACATTAGTGGTGCAAGCTT
JMSF023I01+           TGTTGGAAGAATAAGTATTGGAAGATGCCGGTAACATAGCCACATTAGTGGTGCAAGCTT
                      ____________________________________________________________
consensus             TGTTGGAAGAATAAGTATTGGAAGATGCCGGTAACATAGCCACATTAGTGGTGCAAGCTT
 
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JMFS068E01+           GGTTTTGATACTCTTCATTTGGTGATTCCGGTGACAAAAAGCTTTCTGATGTTGAAAGTG
JMSF023I01+           GGTTTTGATACTCTTCATTTGGTGATTCCGGTGACAAAAAGCTTTCTGATGTTGAAAGTG
                      ____________________________________________________________
consensus             GGTTTTGATACTCTTCATTTGGTGATTCCGGTGACAAAAAGCTTTCTGATGTTGAAAGTG
 
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JMFS068E01+           GTCTTGATGATGCTAGTGTCTTGGACACTAATTGAGATAGGACCCAATCCTTGAAGCTCA
JMSF023I01+           GTCTTGATGATGCTAGTGTCTTGGACACTAATTGAGATAGGACCCAATCCTTGAAGCTCA
                      ____________________________________________________________
consensus             GTCTTGATGATGCTAGTGTCTTGGACACTAATTGAGATAGGACCCAATCCTTGAAGCTCA
 
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JMFS068E01+           TAATGCCTGATGGTATCACACTCACTGCATCCATCCAAGATTTTCACAGCTCTGGCAATG
JMSF023I01+           TAATGCCTGATGGTATCACAATCACTGCATCCATCCAAGATTTTCACAGCTCTGGCAATG
                      ____________________________________________________________
consensus             TAATGCCTGATGGTATCACACTCACTGCATCCATCCAAGATTTTCACAGCTCTGGCAATG
 
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JMFS068E01+           CCAAATTACCATAAACAACTGAAAATCCTTGCCCTATTTTACCCTACTAAACAAAGAAAA
JMSF023I01+           CCAAATTACCATAAACAACTGAAAATCCTTGCCCTATTTTACCCTACTAAACAAAGAAAA
                      ____________________________________________________________
consensus             CCAAATTACCATAAACAACTGAAAATCCTTGCCCTATTTTACCCTACTAAACAAAGAAAA
 
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JMFS068E01+           AACCCAGTTCAAAAAAACTTAATTTTGGATCGAAAACAGAAACTGAAACCAGCAGAGAAT
JMSF023I01+           AACCCAGTTCAAAAAAACTTAATTTTGGATCGAAAACAGAAACTGAAACCAGCAGAGAAT
                      ____________________________________________________________
consensus             AACCCAGTTCAAAAAAACTTAATTTTGGATCGAAAACAGAAACTGAAACCAGCAGAGAAT
 
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JMFS068E01+           TCTTTCAGGAAAGGATAGAATCGAAGGGTATGCAAAAAATTGCAACTTTTTGGGGGAAAT
JMSF023I01+           TCTTTCAGGAAAGGATAGAATCGAAGGGTATGCAAAAAATTGCAACTTTTTGGGGGAAAT
                      ____________________________________________________________
consensus             TCTTTCAGGAAAGGATAGAATCGAAGGGTATGCAAAAAATTGCAACTTTTTGGGGGAAAT
 
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JMFS068E01+           TCATAAAGAACACACACACTGAAATTTGATGGTATTAAATGAGAACAAAGTTCATATATG
JMSF023I01+           TCATAAAGA--ACACACACTGAAATTTGATGGTATTAAATGAGAACAAAGTTCATATATG
                      ____________________________________________________________
consensus             TCATAAAGAACACACACACTGAAATTTGATGGTATTAAATGAGAACAAAGTTCATATATG
 
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JMFS068E01+           GATTGATTGATAGAGGAGGGGACAGCGAGAGAAGATTGGGGAATTTTTTATCAGATGA  
JMSF023I01+           GATTGATTGATAGAGGAGGGGACAGCGAGAGAAGATTGGGGAATTTTTTATCAGATGAGA
                      ____________________________________________________________
consensus             GATTGATTGATAGAGGAGGGGACAGCGAGAGAAGATTGGGGAATTTTTTATCAGATGAGA
 
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JMSF023I01+           CAGGAAACAACGAGGCATGGTCTATAGTAACCGACTCCTCGCCCTTCAAAATGGATACCC
                      ____________________________________________________________
consensus             CAGGAAACAACGAGGCATGGTCTATAGTAACCGACTCCTCGCCCTTCAAAATGGATACCC