Contig 007885:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF024F06-                    ACTTTTTTTTCATAAAAGCATATAGGCCTGGTACAACACGTTAGAAAATA
rJMSF023F06-                    ACTTTTTTTTCATAAAAGCATATAGGCCTGGTACAACAC-TTAGAAAATA
JMSF023F06+                                                              TAGAAAATA
                      ____________________________________________________________
consensus                       ACTTTTTTTTCATAAAAGCATATAGGCCTGGTACAACACGTTAGAAAATA
 
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rJMSF024F06-          TACAAGTAAGGAATTCCTTCAATAAACAAAAAGGCAATTCCTTAGTATCATGCATGATGC
rJMSF023F06-          TACAAGTAAGGAATTCCTTCAATAAACAAAAAGGCAATTCCTTAGTATCATGCATGATGC
JMSF023F06+           TACAAGTAAGGAATTCCTTCAATAAACAAAAAGGCAATTCCTTAGTATCATGCATGATGC
                      ____________________________________________________________
consensus             TACAAGTAAGGAATTCCTTCAATAAACAAAAAGGCAATTCCTTAGTATCATGCATGATGC
 
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rJMSF024F06-          AACAACAACACCACCTTAATTGCAGCAAACCCTAATTAACATAGTTACTGCAGATTTTTC
rJMSF023F06-          AACAACAACACCACCTTAATTGCAGCAAACCCTAATTAACATAGTTACTGCAGATTTTTC
JMSF023F06+           AACAACAACACCACCTTAATTGCAGCAAACCCTAATTAACATAGTTACTGCAGATTTTTC
                      ____________________________________________________________
consensus             AACAACAACACCACCTTAATTGCAGCAAACCCTAATTAACATAGTTACTGCAGATTTTTC
 
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rJMSF024F06-          TCGTCACTAAAAACGTAAGACAGACACCATACTGCACCTACCTAATATATATACCATCCT
rJMSF023F06-          TCGTCACTAAAAACGTAAGACAGACACCATACTGCACCTACCTAATATATATACCATCCT
JMSF023F06+           TCGTCACTAAAAACGTAAGACAGACACCATACTGCACCTACCTAATATATATACCATCCT
                      ____________________________________________________________
consensus             TCGTCACTAAAAACGTAAGACAGACACCATACTGCACCTACCTAATATATATACCATCCT
 
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rJMSF024F06-          TATTTTCAAAGCTGCCGGCCCGGGGGCATATCATCAATACTTAACAGTAGAAATCACCTC
rJMSF023F06-          TATTTTCAAAGCTGCCGGCCCGGGGGCATATCATCAATACTTAACAGTAGAAATCACCTC
JMSF023F06+           TATTTTCAAAGCTGCCGGCCCGGGGGCATATCATCAATACTTAACAGTAGAAATCACCTC
                      ____________________________________________________________
consensus             TATTTTCAAAGCTGCCGGCCCGGGGGCATATCATCAATACTTAACAGTAGAAATCACCTC
 
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rJMSF024F06-          TTCTTTGCCGGTTTCAGGGTTGAGGNGTAGGGTGTAAGCCCGGGGGCCCTGATAGGTGGT
rJMSF023F06-          TTCTTTGCCGGTTTCAGGGTTGAGGTGTAGGGTGTAAGCCCGGGGGCCCTGATAGGTGGT
JMSF023F06+           TTCTTTGCCGGTTTCAGGGTTGAGGTGTAGGGTGTAAGCCCGGGGGCCCTGATAGGTGGT
                      ____________________________________________________________
consensus             TTCTTTGCCGGTTTCAGGGTTGAGGTGTAGGGTGTAAGCCCGGGGGCCCTGATAGGTGGT
 
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rJMSF024F06-          GAAGAACATAGTTTTAGGTTGTTGGGGTTCTGAGGTANCANCAAATTTAGGTTTGTGATG
rJMSF023F06-          GAAGAACATAGTTTTAGGTTGTTGGGGTTCTGAGGTAGCAGCAAATTTAGGTTTGTGATG
JMSF023F06+           GAAGAACATAGTTTTAGGTTGTTGGGGTTCTGAGGTAGCAGCAAATTTAGGTTTGTGATG
                      ____________________________________________________________
consensus             GAAGAACATAGTTTTAGGTTGTTGGGGTTCTGAGGTAGCAGCAAATTTAGGTTTGTGATG
 
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rJMSF024F06-          ATAAGTAGTAGGATAAAAGGGCTTCTGTGGGTAATAGTTAATAGGTTGAGGAGGATAAAG
rJMSF023F06-          ATAAGTAGTAGGATAAAAGGGCTTCTGTGGGTAATAGTTAATAGGTTGAGGAGGATAAAG
JMSF023F06+           ATAAGTAGTAGGATAAAAGGGCTTCTGTGGGTAATAGTTAATAGGTTGAGGAGGATAAAG
                      ____________________________________________________________
consensus             ATAAGTAGTAGGATAAAAGGGCTTCTGTGGGTAATAGTTAATAGGTTGAGGAGGATAAAG
 
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rJMSF024F06-          ATGATGCCTGGGGTAGGGTGTTCTTCCATAGATTGGTTCCCTATCCAAATGTTGAAACCC
rJMSF023F06-          ATGATGCCTGGGGTAGGGTGTTCTTCCATAGATTGGTTCCCTATCCAAATGTTGAAACCC
JMSF023F06+           ATGATGCCTGGGGTAGGGTGTTCTTCCATAGATTGGTTCCCTATCCAAATGTTGAAACCC
                      ____________________________________________________________
consensus             ATGATGCCTGGGGTAGGGTGTTCTTCCATAGATTGGTTCCCTATCCAAATGTTGAAACCC
 
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rJMSF024F06-          ATCTAAGCCTATATCCACAAGCTTCNGCTTTGGGNAAGCTATTCTTGCCATTTCAGAAAG
rJMSF023F06-          ATCTAAGCCTATATCCACAAGCTTCTGCTTTGGGTAAGCTATTCTTGCCATTTCAGAAAG
JMSF023F06+           ATCTAAGCCTATATCCACAAGCTTCTGCTTTGGGTAAGCTATTCTTGCCATTTCAGAAAG
                      ____________________________________________________________
consensus             ATCTAAGCCTATATCCACAAGCTTCTGCTTTGGGTAAGCTATTCTTGCCATTTCAGAAAG
 
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rJMSF024F06-          CTTCTGGGTTTAATTAGGGTCTAGTAGTGTGTAGTGTGAAGAAGA               
JMFF003F06+                                                GAAGAAGAAGAAGAAGAAGAAGA
rJMSF023F06-          CTTCTGGGTTTAATTAGGGTCTAGTAGTGTGTAGTGTGAAGAAGAAGAAGTAGAAGAAGA
JMSF023F06+           CTTCTGGGTTTAATTAGGGTCTAGTAGTGTGTAGTGTGAAGAAGAAGAAGTAGAAGAAGA
                      ____________________________________________________________
consensus             CTTCTGGGTTTAATTAGGGTCTAGTAGTGTGTAGTGTGAAGAAGAAGAAGTAGAAGAAGA
 
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JMFF003F06+           AGAAGAAGAAGAAGAAGAAGAAGAAAG                                 
rJMSF023F06-          AGAAGAAGAAGAAGAAGAAGAAGAAAGA                                
JMSF023F06+           AGAAGAAGAAGAAGAAGAAGAAGAAAGAAACCTAATTAGCTTTGTGTGTATGTTGCAGTC
                      ____________________________________________________________
consensus             AGAAGAAGAAGAAGAAGAAGAAGAAAGAAACCTAATTAGCTTTGTGTGTATGTTGCAGTC