Contig 007878:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN012E06Sequence648007878 (3)emb|CAC84552.1|8e-65putative receptor-like serine-threonine protein kinase [Solanum tuberosum]
JMSF022H21Sequence662007878 (3)emb|CAC84552.1|1e-59putative receptor-like serine-threonine protein kinase [Solanum tuberosum]758007878 (3)ref|XP_009785802.1|4e-24PREDICTED: putative receptor-like protein kinase At4g00960 isoform X2 [Nicotian

Alignment

This contig is upended


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rJMSF022H21-               GGATAAAATAAAATTAAAAATTAGGGTTTTGCCTCCCGCACATGATAAACAATTG
                      ____________________________________________________________
consensus                  GGATAAAATAAAATTAAAAATTAGGGTTTTGCCTCCCGCACATGATAAACAATTG
 
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rJMSF022H21-          ACACAATGTTCATGATTTTTCAATTTTAGCTCAATTTTAATTGTTTACACACACACAAAG
                      ____________________________________________________________
consensus             ACACAATGTTCATGATTTTTCAATTTTAGCTCAATTTTAATTGTTTACACACACACAAAG
 
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rJMSF022H21-          CTTATAGTGAATTATAATTCGGAATTAACTCTTATGTAAGTATAAATAAAATACAACGCT
                      ____________________________________________________________
consensus             CTTATAGTGAATTATAATTCGGAATTAACTCTTATGTAAGTATAAATAAAATACAACGCT
 
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rJMSF022H21-          TAAAACAAAACATTGAAAATCACCTGATTTTGGGGACGACGGAACTTCAATCACTGAAAA
                      ____________________________________________________________
consensus             TAAAACAAAACATTGAAAATCACCTGATTTTGGGGACGACGGAACTTCAATCACTGAAAA
 
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rJMSF022H21-          ATAACGATCTCAATTATTTATGTAAATGTAAACTACAATGCTCAAAACAAAAAGTCAATT
                      ____________________________________________________________
consensus             ATAACGATCTCAATTATTTATGTAAATGTAAACTACAATGCTCAAAACAAAAAGTCAATT
 
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rJMSF022H21-          ATTTATGTAAATAAATATAAAATAAATGCTAAGAACAAAACATCAAAAAGTCACCTGATT
                      ____________________________________________________________
consensus             ATTTATGTAAATAAATATAAAATAAATGCTAAGAACAAAACATCAAAAAGTCACCTGATT
 
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rJMSF022H21-          TTGGGGGCGGAGCTCTTATAAAATAAATCTTTGGATTAGTTATAAGATTGTAAATATGTA
                      ____________________________________________________________
consensus             TTGGGGGCGGAGCTCTTATAAAATAAATCTTTGGATTAGTTATAAGATTGTAAATATGTA
 
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rJMSF022H21-          AACTACCTTAAAGATAAATCTAACCAAAAAAAATTAAAAAACTATAATGTCACCTGGTTG
                      ____________________________________________________________
consensus             AACTACCTTAAAGATAAATCTAACCAAAAAAAATTAAAAAACTATAATGTCACCTGGTTG
 
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rJMSF022H21-          TGCCGGTGGTGGTGGAGTAGATCCAATCAATGTATAATTGTAGAAACGATAAGACTCAAA
                      ____________________________________________________________
consensus             TGCCGGTGGTGGTGGAGTAGATCCAATCAATGTATAATTGTAGAAACGATAAGACTCAAA
 
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rJMSF022H21-          GCGGAAGTTGCAGCCCGGCCTTACTACTCTGCCCCCTCTCTTGCCAGTGCATGGGGCACA
                      ____________________________________________________________
consensus             GCGGAAGTTGCAGCCCGGCCTTACTACTCTGCCCCCTCTCTTGCCAGTGCATGGGGCACA
 
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rJMSF022H21-          ATCAGGGAAATCAGCAAAAGTAGAAACCAAGCAATCAGAGCAATCTTGAGCACCCAAGTC
JMFN012E06+                                    ACCAAGCAATCAGAGCAATCTTGAGCACCCAAGTC
JMSF022H21+                                                                     TC
                      ____________________________________________________________
consensus             ATCAGGGAAATCAGCAAAAGTAGAAACCAAGCAATCAGAGCAATCTTGAGCACCCAAGTC
 
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rJMSF022H21-          AGGGGAGCACTGCACAGCTGCATATATACTCTGCAAGTCCGGTCCAGATGTATTCCCTGC
JMFN012E06+           AGGGGAGCACTGCACAGCTGCATATATACTCTGCAAGTCCGGTCCAGATGTATTCCCTGC
JMSF022H21+           AGGGGAGCACTGCACAGCTGCATATATACTCTGCAAGTCCGGTCCAGATGTATTCCCTGC
                      ____________________________________________________________
consensus             AGGGGAGCACTGCACAGCTGCATATATACTCTGCAAGTCCGGTCCAGATGTATTCCCTGC
 
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rJMSF022H21-          TGCAAACTTA                                                  
JMFN012E06+           TGCAAACTTACGTAAGGAGAAACCGTTTGCCGCACGGTCTCCTAGGCTGTTCAGCAATTT
JMSF022H21+           TGCAAACTTACGTAAGGAGAAACCGTTTGCCGCACGGTCTCCTAGGCTGTTCAGCAATTT
                      ____________________________________________________________
consensus             TGCAAACTTACGTAAGGAGAAACCGTTTGCCGCACGGTCTCCTAGGCTGTTCAGCAATTT
 
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JMFN012E06+           ACTTAAATCTCGGTAAAACTGGTCTTGGCTGGACGCGTTCTGCAAATTCCACAAGTACAT
JMSF022H21+           ACTTAAATCTCGGTAAAACTGGTCTTGGCTGGACGCGTTCTGCAAATTCCACAAGTACAT
                      ____________________________________________________________
consensus             ACTTAAATCTCGGTAAAACTGGTCTTGGCTGGACGCGTTCTGCAAATTCCACAAGTACAT
 
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JMFN012E06+           CCCAGGAGACCTCGACCAGCGACCTACGGTGGATACGTTGGAGTAATGAATCAAGCACTC
JMSF022H21+           CCCAGGAGACCTCGACCAGCGACCTACGGTGGATACGTTGGAGTAATGAATCAAGCACTC
                      ____________________________________________________________
consensus             CCCAGGAGACCTCGACCAGCGACCTACGGTGGATACGTTGGAGTAATGAATCAAGCACTC
 
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JMFN012E06+           ATCGTATCCTCCGAAAACCTCCTTCTCATTAGGACACAACTCTACTGTCTTCCCAGCTGC
JMSF022H21+           ATCGTATCCTCCGAAAACCTCCTTCTCATTAGGACACAACTCTACTGTCTTCCCAGCTGC
                      ____________________________________________________________
consensus             ATCGTATCCTCCGAAAACCTCCTTCTCATTAGGACACAACTCTACTGTCTTCCCAGCTGC
 
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JMFN012E06+           ATCGTTAACGCAACTTTTGCAAATGTCCGCCGCAACGTCACCTCGGCACAGCGCAACCAC
JMSF022H21+           ATCGTTAACGCAACTTTTGCAAATGTCCGCCGCAACGTCACCTCGGCACAGCGCAACCAC
                      ____________________________________________________________
consensus             ATCGTTAACGCAACTTTTGCAAATGTCCGCCGCAACGTCACCTCGGCACAGCGCAACCAC
 
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JMFN012E06+           ACTCACCCTGTCGGGAGTTTCGCCCATGGAAGCATTGCAGAATCCATATTCGTTGAGTTT
JMSF022H21+           ACTCACCCTGTCGGGAGTTTCGCCCATGGAAGCATTGCAGAATCCATATTCGTTGAGTTT
                      ____________________________________________________________
consensus             ACTCACCCTGTCGGGAGTTTCGCCCATGGAAGCATTGCAGAATCCATATTCGTTGAGTTT
 
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JMFN012E06+           AGAAGGGAGGGACGAAAGAAGCGTGTTAAGGTTTCTCTGGTAGGTGCTGTTTTGTGTGTA
JMSF022H21+           AGAAGGGAGGGACGAAAGAAGCGTGTTAAGGTTTCTCTGGTAGGTGCTGTTTTGTGTGTA
                      ____________________________________________________________
consensus             AGAAGGGAGGGACGAAAGAAGCGTGTTAAGGTTTCTCTGGTAGGTGCTGTTTTGTGTGTA
 
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JMFN012E06+           ATTCCCACTTGATTCCACGCAGTAATTGTACCGGAGGTCAGGCTGTGCGACAGCTAACAA
JMSF022H21+           ATTCCCACTTGATTCCACGCAGTAATTGTACCGGAGGTCAGGCTGTGCGACAGCTAACAA
                      ____________________________________________________________
consensus             ATTCCCACTTGATTCCACGCAGTAATTGTACCGGAGGTCAGGCTGTGCGACAGCTAACAA
 
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JMFN012E06+           GGTCATCGTACTACAAACAAGGTTTAGGAAACCCACCCATTTCTGCAAATCCATGGCTTC
JMSF022H21+           GGTCATCGTACTACAAACAAGGTTTAGGAAACCCACCCATTTCTGCAAATCCATGGCTTC
                      ____________________________________________________________
consensus             GGTCATCGTACTACAAACAAGGTTTAGGAAACCCACCCATTTCTGCAAATCCATGGCTTC
 
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JMFN012E06+           AAACTCAGACAAA                                               
JMSF022H21+           AAACTCAGACAAACTGACCCAAAATTTCAACTGGACATCAATGATTTCAATCACATATCC
                      ____________________________________________________________
consensus             AAACTCAGACAAACTGACCCAAAATTTCAACTGGACATCAATGATTTCAATCACATATCC