Contig 007877:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF022E15-                                                              ATGTTTAG
                      ____________________________________________________________
consensus                                                                 ATGTTTAG
 
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rJMSF022E15-          TGCAATACAACAAAATCTGATACATTACCCATATAATTACATGGAAATAGTGAATTTTGC
                      ____________________________________________________________
consensus             TGCAATACAACAAAATCTGATACATTACCCATATAATTACATGGAAATAGTGAATTTTGC
 
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rJMSF022E15-          AACAAAAATAATAATATAGCATTAAAAAATGATGTCAAACCAGATATCAAAGGAAAAACT
                      ____________________________________________________________
consensus             AACAAAAATAATAATATAGCATTAAAAAATGATGTCAAACCAGATATCAAAGGAAAAACT
 
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rJMSF022E15-          ACTCCTGAAAACTATTTATAAAATATCAAAGGGAAAAGAACACAAAAGTGAAGGACAAAC
                      ____________________________________________________________
consensus             ACTCCTGAAAACTATTTATAAAATATCAAAGGGAAAAGAACACAAAAGTGAAGGACAAAC
 
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rJMSF022E15-          CAGATAAGGAAAGTAAATGTTAACACTTGAAAATCATTTTTAACTCTAAAACAACAATTG
                      ____________________________________________________________
consensus             CAGATAAGGAAAGTAAATGTTAACACTTGAAAATCATTTTTAACTCTAAAACAACAATTG
 
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rJMSF022E15-          AAATCATTTTTAAAACTACAAAGGACAAATGAAAATCACTTTCAAAAACTAAAATGAAAT
JMSF022E15+                          CTACAAAGGACAAATGAAANTCACTTTCAAAAACTAAAATGAAAT
                      ____________________________________________________________
consensus             AAATCATTTTTAAAACTACAAAGGACAAATGAAAATCACTTTCAAAAACTAAAATGAAAT
 
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rJMSF022E15-          CTTGAAATCATTTTTACAACTAATAAAACACTTGAAAACAGTGAAAATCATTTTAAAAGT
JMSF022E15+           CTTGAAATCATTTTTACAACTAATAAAACACTTGAAAACAGTGAAAATCATTTTAAAAGT
                      ____________________________________________________________
consensus             CTTGAAATCATTTTTACAACTAATAAAACACTTGAAAACAGTGAAAATCATTTTAAAAGT
 
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rJMSF022E15-          AATGAAGGGAAAAGAACCCAAAATTTTGAGGAAACCAGATGTGCAGGGGTCCTTTCAAAA
JMFF045L16+                                      GAGGAAACCAGATGTGCAGGGGTCCTTTCAAAA
rJMFF045L16-                                 TTTTGAGGAAACCAGATGTGCAGGGGTCCTTTCTAAA
JMSF022E15+           AATGAAGGGAAAAGAACCCAAAATTTTGAGGAAACCAGATGTGCAGGGGTCCTTTCAAAA
                      ____________________________________________________________
consensus             AATGAAGGGAAAAGAACCCAAAATTTTGAGGAAACCAGATGTGCAGGGGTCCTTTCAAAA
 
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rJMSF022E15-          CAATCAAGATCAGTCAGACAGAATTTTATACAACAGACCCCCTTATACTAATATTGATTA
JMFF045L16+           CAATCAAGATCAGTCAGACAGAA-TTTATACAACAGACCCCCTTATACTAATATTGATTA
rJMFF007N01-                                                             TATTGATTA
JMFF007N01+                                                             ATATTGATTA
rJMFF045L16-          CAATCAAGATCAGTCAGACAGAATTTTATACAACAGACCCCCTTATACTAATATTGATTA
JMSF022E15+           CAATCAAGATCAGTCAGACAGAATTTTATACAACAGACCCCCTTATACTAATATTGATTA
                      ____________________________________________________________
consensus             CAATCAAGATCAGTCAGACAGAATTTTATACAACAGACCCCCTTATACTAATATTGATTA
 
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rJMSF022E15-          CTATTATTTTTAGTAACAGCCAATGGTAATTAATTGACCAATCAGCCTGATATAGTAAAC
JMFF045L16+           CTATTATTTTTAGTAACAGCCAATGGTAATTAATTGACCAATCAGCCTGATATAGTAAAC
rJMFF007N01-          CTATTATTTTTAGTAACAGCCAATGGTAATTAATTGACCAATCAGCCTGATATAGTAAAC
JMFF007N01+           CTATTATTTTTAGTAACAGCCAATGGTAATTAATTGACCAATCAGCCTGATATAGTAAAC
rJMFF045L16-          CTATTATTTTTACCACCAGCCAATGGTAATTAATTGACCAATCAGCCTGATATAGTAAAC
JMSF022E15+           CTATTATTTTTAGTAACAGCCAATGGTAATTAATTGACCAATCAGCCTGATATAGTAAAC
                      ____________________________________________________________
consensus             CTATTATTTTTAGTAACAGCCAATGGTAATTAATTGACCAATCAGCCTGATATAGTAAAC
 
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rJMSF022E15-          ATAATAGAATCCAACATAAAAATAATAAATTTGTACAGTAAATTATATGGAGTCTGGGGC
JMFF045L16+           ATAATAGAATCCAACATAAAAATAATAAATTTGTACAGTAAATTATATGGAGTCTGGGGC
rJMFF007N01-          ATAATAGAATCCAACATAAAAATAATAAATTTGTACAGTAAATTATATGGAGTCTGGGGC
JMFF007N01+           ATAATAGAATCCAACATAAAAATAATAAATTTGTACAGTAAATTATATGGAGTCTGGGGC
rJMFF045L16-          ATAATAGAATCCCACATAAAAATAATAAATTTGTACAGTAAATTATATGGAGTCTGGGGC
JMSF022E15+           ATAATAGAATCCAACATAAAAATAATAAATTTGTACAGTAAATTATATGGAGTCTGGGGC
                      ____________________________________________________________
consensus             ATAATAGAATCCAACATAAAAATAATAAATTTGTACAGTAAATTATATGGAGTCTGGGGC
 
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rJMSF022E15-          TACACGCACCGCCGTGTATGACCGTGAATCCACCCACGCACGAGAGGCCTATGAAATCTT
JMFF045L16+           TACACGCACCGCCGTGTATGACCGTGAATCCACCCACGCACGAGAGGCCTATGAAATCTT
rJMFF007N01-          TACACGCACCGCCGTGTATGACCGTGAATCCACCCACGCACGAGAGGCCTATGAAATCTT
JMFF007N01+           TACACGCACCGCCGTGTATGACCGTGAATCCACCCACGCACGAGAGGCCTATGAAATCTT
rJMFF045L16-          TACACGCACCGCCGTGTATGACCGTGAATCCACCCACGCACGAGAGGCCTATGAAATCTT
JMSF022E15+           TACACGCACCGCCGTGTATGACCGTGAATCCACCCACGCACGAGAGGCCTATGAAATCTT
                      ____________________________________________________________
consensus             TACACGCACCGCCGTGTATGACCGTGAATCCACCCACGCACGAGAGGCCTATGAAATCTT
 
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rJMSF022E15-          CCGTTACCCCAAAGCGCCGCAGAGGAAATGATGAAACCCTTCTGGTTCTG-AAAAGACAA
JMFF045L16+           CCGTTACCCCAAAGCGCCGCAGAGGAAATGATGAAACCCTTCTGGTTCTGAAAAAGACAA
rJMFF007N01-          CCGTTACCCCAAAGCGCCGCAGAGGAAATGATGAAACCCTTCTGGTTCTGAAAAAGACAA
JMFF007N01+           CCGTTACCCCAAAGCGCCGCAGAGGAAATGATGAAACCCTTCTGGTTCTGAAAAAGACAA
rJMFF045L16-          CCGTTACCCCAAAGCGCCGCAGAGGAAATGATGAAACCCTTCTGGTTCTGAAAAAGACAA
JMSF022E15+           CCGTTACCCCAAAGCGCCGCAGAGGAAATGATGAAACCCTTCTGGTTCTGAAAAAGACAA
                      ____________________________________________________________
consensus             CCGTTACCCCAAAGCGCCGCAGAGGAAATGATGAAACCCTTCTGGTTCTGAAAAAGACAA
 
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rJMSF022E15-          ACCACACCCGAGAAA                                             
JMFF045L16+           ACCACACCCGAGAAAACGGAAAGTTGGTAAAACAAATAATACTAAGAAAGAGAGGAAACC
rJMFF007N01-          ACCACACCCGAGAAAACGGAAAGTTGGT-AAACAAATAATACTAAGAAAGAGAGGAAACC
JMFF007N01+           ACCACACCCGAGAAAACGGAAAGTTGGT-AAACAAATAATACTAAGAAAGAGAGGAAACC
rJMFF045L16-          ACCACACCCGACAAAACGGAAAGTTGGT-AAA                            
JMSF022E15+           ACCACACCCGAGAAAACGGAAAGTTGGT-AAACAAATAATACTAAGAAAGAGAGGAAACC
                      ____________________________________________________________
consensus             ACCACACCCGAGAAAACGGAAAGTTGGT-AAACAAATAATACTAAGAAAGAGAGGAAACC
 
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JMFF045L16+           CATAGGTACAACCTAATAGCGTTTCGGATGGCCCTCAAATCCACCGTAGAAACCCAGAAT
rJMFF007N01-          CATAGGTACAACCTAATAGCGTTTCGGATGGCCCTCAAATCCACCGTAGAAACCCAGAAT
JMFF007N01+           CATAGGTACAACCTAATAGCGTTTCGGATGGCCCTCAAATCCACCGTAGAAACCCAGAAT
JMSF022E15+           CATAGGTACAACCTAATAGCGTTTCGGATGGCCCTCAAATCCACCGTAGAAACCCAGAAT
                      ____________________________________________________________
consensus             CATAGGTACAACCTAATAGCGTTTCGGATGGCCCTCAAATCCACCGTAGAAACCCAGAAT
 
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JMFF045L16+           CCGGCAAAAGTGAGATGAATCTACTAATCGGCCATCTAGGGTTTCTGCGCCACGAGGAGA
rJMFF007N01-          CCGGCAAAAGTGAGATGAATCTACTAATCGGCCATCTAGGGTTTCTGCGCCACGAGGAGA
JMFF007N01+           CCGGCAAAAGTGAGATGAATCTACTAATCGGCCATCTAGGGTTTCTGCGCCACGAGGAGA
JMSF022E15+           CCGGCAAAAGTGAGATGAATCTACTAATCGGCCATCTAGGGTTTCTGCGCCACGAGGAGA
                      ____________________________________________________________
consensus             CCGGCAAAAGTGAGATGAATCTACTAATCGGCCATCTAGGGTTTCTGCGCCACGAGGAGA
 
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JMFF045L16+           AGAAGAGAAGTAGACTATCACGAAGAGAGAAGCCGCGACTTCGGAAGAAACC        
rJMFF007N01-          AGAAGAGAAGTAGACTATCACGAAGAGAGAAGCCGCGACTTCGGAAGAAACC        
JMFF007N01+           AGAAGAGAAGTAGACTATCACGAAGAGAGAAGCCGCGACTTCGGAAGAAACC        
JMSF022E15+           AGAAGAGAAGTAGACTATCACGAAGAGAGAAGCCGCGACTTCGGAAGAAACCGAAGAATC
                      ____________________________________________________________
consensus             AGAAGAGAAGTAGACTATCACGAAGAGAGAAGCCGCGACTTCGGAAGAAACCGAAGAATC