Contig 007868:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020K01Sequence714007868 (3)ref|XP_002265990.1|9e-74PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Vitis vinifera778004289 (3)ref|XP_002265990.1|5e-96PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Vitis vinifera
JMSF029O05Sequence693007868 (3)ref|XP_002265990.1|1e-69PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Vitis vinifera719004289 (3)ref|XP_009613429.1|5e-76PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Nicotiana tome
JMSF032F16Sequence665007868 (3)ref|XP_002265990.1|1e-73PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Vitis vinifera794004289 (3)ref|XP_002265990.1|3e-96PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Vitis vinifera

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029O05+                                      GCTCAGGCCATGCTGCTTCCAAAGTAACATCAT
JMSF032F16+                     TTTGTGGTCTATGAATCGCTCAGGCCATGCTGCTTCCAAAGTAACATCAT
JMSF020K01+                 TTCCTTTGTGGTCTATGAATCGCTCAGGCCATGCTGCTTCCAAAGTAACATCAT
                      ____________________________________________________________
consensus                   TTCCTTTGTGGTCTATGAATCGCTCAGGCCATGCTGCTTCCAAAGTAACATCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029O05+           GATCAGAAAGCTTGTGCATATACATTGCCTTCATGCGGCGGCAGCCCTCCTCACCAGGCT
JMSF032F16+           GATCAGAAAGCTTGTGCATATACATTGCCTTCATGCGGCGGCAGCCCTCCTCACCAGGCT
JMSF020K01+           GATCAGAAAGCTTGTGCATATACATTGCCTTCATGCGGCGGCAGCCNTCCTCACCAGGCT
                      ____________________________________________________________
consensus             GATCAGAAAGCTTGTGCATATACATTGCCTTCATGCGGCGGCAGCCCTCCTCACCAGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029O05+           GCTCCATGCTCAACAATATGGAAGATGAATCCGTCAGGGGTATGTGTGAGTTTACACCAA
JMSF032F16+           GCTCCATGCTCAACAATATGGAAGATGAATCCGTCAGGGGTATGTGTGAGTTTACACCAA
JMSF020K01+           GCTCCATGCTCAACAATATGGAAGATGAATCCGTCAGGGGTATGTGTGAGTTTACACCAA
                      ____________________________________________________________
consensus             GCTCCATGCTCAACAATATGGAAGATGAATCCGTCAGGGGTATGTGTGAGTTTACACCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029O05+           GCGAATAAAATGATTTGTCCAAAAAACACTTATGCAGATTCTTGAATATTGGCAGGAATA
JMSF032F16+           GCGAATAAAATGATTTGTCCAAAAAACACTTATGCAGATTCTTGAATATTGGCAGGAATA
JMSF020K01+           GCGAATAAAATGATTTGTCCAAAAAACACTTATGCAGATTCTTGAATATTGGCAGGAATA
                      ____________________________________________________________
consensus             GCGAATAAAATGATTTGTCCAAAAAACACTTATGCAGATTCTTGAATATTGGCAGGAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029O05+           CCGGAAGTTCAAACTCCCAGTCATCATCATCAGTTATTTTACGTATATCTGCTTTGATGA
JMSF032F16+           CCGGAAGTTCAAACTCCCAGTCATCATCATCAGTTATTTTACGTATATCTGCTTTGATGA
JMSF020K01+           CCGGAAGTTCAAACTCCCAGTCATCATCATCAGTTATTTTACGTATATCTGCTTTGATGA
                      ____________________________________________________________
consensus             CCGGAAGTTCAAACTCCCAGTCATCATCATCAGTTATTTTACGTATATCTGCTTTGATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029O05+           CCTCTATTTCCGCTTTTAGTTTAGATATCAGTTTCTTTGGGCGAACTTGCCCCACTAATC
JMSF032F16+           CCTCTATTTCCGCTTTTAGTTTAGATATCAGTTTCTTTGGGCGAACTTGCCCCACTAATC
JMSF020K01+           CCTCTATTTCCGCTTTTAGTTTAGATATCAGTTTCTTTGGGCGAACTTGCCCCACTAATC
                      ____________________________________________________________
consensus             CCTCTATTTCCGCTTTTAGTTTAGATATCAGTTTCTTTGGGCGAACTTGCCCCACTAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029O05+           CAACCCACCATTTGGAAATGGCAGTTTTGAAAAAGACGGTCTGGAGAGCTAAGGGGCCGA
JMSF032F16+           CAACCCACCATTTGGAAATGGCAGTTTTGAAAAAGACGGTCTGGAGAGCTAAGGGGCCGA
JMSF020K01+           CAACCCACCATTTGGAAATGGCAGTTTTGAAAAAGACGGTCTGGAGAGCTAAGGGGCCGA
                      ____________________________________________________________
consensus             CAACCCACCATTTGGAAATGGCAGTTTTGAAAAAGACGGTCTGGAGAGCTAAGGGGCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029O05+           GTTCCTTCTTAGACGGAGGAGAGAAAGACGGGACGAGTCCGAGAGGAAAGCCATTTCCGA
JMSF032F16+           GTTCCTTCTTAGACGGAGGAGAGAAAGACGGGACGAGTCCGAGAGGAAAGCCATTTCCGA
JMSF020K01+           GTTCCTTCTTAGACGGAGGAGAGAAAGACGGGACGAGTCCGAGAGGAAAGCCATTTCCGA
                      ____________________________________________________________
consensus             GTTCCTTCTTAGACGGAGGAGAGAAAGACGGGACGAGTCCGAGAGGAAAGCCATTTCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029O05+           GGAGAGAGAGCTGCTGGATTCTGAGGACTCGGCTGGCTCGAGCACCGTCCATGGGAATGG
JMSF032F16+           GGAGAGAGAGCTGCTGGATTCTGAGGACTCGGCTGGCTCGAGCACCGTCCATGGGAATGG
JMSF020K01+           GGAGAGAGAGCTGCTGGATTCTGAGGACTCGGCTGGCTCGAGCACCGTCCATGGGAATGG
                      ____________________________________________________________
consensus             GGAGAGAGAGCTGCTGGATTCTGAGGACTCGGCTGGCTCGAGCACCGTCCATGGGAATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029O05+           GATCGCCGGGAATGGGGCGGACCATGCCGTCTAGGGTTCTGGAAGTGGAGACGTTGAGGT
JMSF032F16+           GATCGCCGGGAATGGGGCGGACCATGCCGTCTAGGGTTCTGGAAGTGGAGACGTTGAGGT
JMSF020K01+           GATCGCCGGGAATGGGGCGGACCATGCCGTCTAGGGTTCTGGAAGTGGAGACGTTGAGGT
                      ____________________________________________________________
consensus             GATCGCCGGGAATGGGGCGGACCATGCCGTCTAGGGTTCTGGAAGTGGAGACGTTGAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029O05+           CCCAGAATGCGGCGTCGATTGCCGTCCGGAGGTTGGCCATTTCGCCGACGAGCCGGCCAC
JMSF032F16+           CCCAGAATGCGGCGTCGATTGCCGTCCGGAGGTTGGCCATTTCGCCGACGAGCCGGCCAC
JMSF020K01+           CCCAGAATGCGGCGTCGGTTGCCGTCCGGAGGTTGGCCATTTCGCCGACGAGCCGGCCAC
                      ____________________________________________________________
consensus             CCCAGAATGCGGCGTCGATTGCCGTCCGGAGGTTGGCCATTTCGCCGACGAGCCGGCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029O05+           CGAAGGGGGAGCACAATTGCTGAAATGGAGAAGAGCGTTCCTTATCTGCGACTCTGAC  
JMSF032F16+           CGAAGGGGGAGCAC                                              
JMSF020K01+           CGAAGGGGGAGCACAATTGCTGAAATGGAGAAGAGCGTTCCTTATCTGCGACTCTGACGC
                      ____________________________________________________________
consensus             CGAAGGGGGAGCACAATTGCTGAAATGGAGAAGAGCGTTCCTTATCTGCGACTCTGACGC