Contig 007865:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007A22Sequence292007865 (4)ref|XP_011085741.1|1e-41PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Sesamum indic725013889 (5)ref|XP_009592903.1|9e-78PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom
JMSF007M02Sequence380007865 (4)ref|XP_009774058.1|6e-24PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana syl685013889 (5)ref|XP_009592903.1|2e-43PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom
JMSF020F21Sequence621007865 (4)ref|XP_009774058.1|2e-57PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana syl780013889 (5)ref|XP_009592903.1|4e-61PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom
JMSF021A22Sequence620007865 (4)ref|XP_011085741.1|3e-71PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Sesamum indic725013889 (5)ref|XP_009592903.1|9e-78PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF007A22+ TCATGTAAAGGTTCAACATCAAATTATAAGGAAGCGTGTTCC
                      ____________________________________________________________
consensus TCATGTAAAGGTTCAACATCAAATTATAAGGAAGCGTGTTCC
 
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JMSF007A22+ TAGTATAGCCCCTGTTTCTCATTTCATCGAATAAAGATTCGGCCTTCTCCCTCATTCCAA
JMSF021A22+ ATCGAATAAAGATTCGGCCTTCTCCCTCATTCCAA
                      ____________________________________________________________
consensus TAGTATAGCCCCTGTTTCTCATTTCATCGAATAAAGATTCGGCCTTCTCCCTCATTCCAA
 
. : . : . : . : . : . :
JMSF007A22+ CACGAACATACGCATTCAAGAGCGACCCGTATATTCGTCTGTCCTTTAGCGAATTTGGCA
JMSF021A22+ CACGAACATACGCATTCAAGAGCGACCCGTATATTCGTCTGTCCTTTAGCGAATTTGGCA
JMSF020F21+ TGTCCTTTAGCGAATTTGGCA
                      ____________________________________________________________
consensus CACGAACATACGCATTCAAGAGCGACCCGTATATTCGTCTGTCCTTTAGCGAATTTGGCA
 
. : . : . : . : . : . :
JMSF007A22+ GGGTGAGGAAGTACTTCTCGGCATTCGAGATTCCATGCACTTTGGAGATCAAATCTAGTT
JMSF021A22+ GGGTGAGGAAGTACTTCTCGGCATTCGAGATTCCATGCACTTTGGAGATCAAATCTAGTT
JMSF020F21+ GGGTGAGGAAGTACTTCTCGGCATTCGAGATTCCATGCACTTTGGAGATCAAATCTAGTT
                      ____________________________________________________________
consensus GGGTGAGGAAGTACTTCTCGGCATTCGAGATTCCATGCACTTTGGAGATCAAATCTAGTT
 
. : . : . : . : . : . :
JMSF007A22+ GAATAGCAGTGTCACTGGTGGTTATTTTATACCTCTCTGCTCTATCATTAATCCACTCAC
JMSF021A22+ GAATAGCAGTGTCACTGGTGGTTATTTTATACCTCTCTGCTCTATCATTCATCCACTCAC
JMSF020F21+ GAATAGCAGTGTCACTGGTGGTTATTTTATACCTCTCTGCTCTATCATTCATCCACTCAC
                      ____________________________________________________________
consensus GAATAGCAGTGTCACTGGTGGTTATTTTATACCTCTCTGCTCTATCATTCATCCACTCAC
 
. : . : . : . : . : . :
JMSF007A22+ ACACCTCGA
JMSF021A22+ ACACCTCGAGAGCAAGGTGGTGTCGCCCGAACTTGCGGAGCTTCCTAACGACGAACAAAA
JMSF007M02+ AACGACGAACAAAA
JMSF020F21+ ACACCTCGAGAGCAAGGTGGTGTCGCCCGAACTTGCGGAGCTTCCTAACGACGAACAAAA
                      ____________________________________________________________
consensus ACACCTCGAGAGCAAGGTGGTGTCGCCCGAACTTGCGGAGCTTCCTAACGACGAACAAAA
 
. : . : . : . : . : . :
JMSF021A22+ GCTCCAGTCTTGAAATCCTCTTGCCTTCATCCTCACACTGGTTTAGCACAGTAGAAGCGC
JMSF007M02+ GCTCCAGTCTTGAAATCCTCTTGCCTTCATCCTCACACTGGTTTAGCACAGTAGAAGCGC
JMSF020F21+ GCTCCAGTCTTGAAATCCTCTTGCCTTCATCCTCACACTGGTTTAGCACAGTAGAAGCGC
                      ____________________________________________________________
consensus GCTCCAGTCTTGAAATCCTCTTGCCTTCATCCTCACACTGGTTTAGCACAGTAGAAGCGC
 
. : . : . : . : . : . :
JMSF021A22+ CCTTCTGCGGGTATTCAATCATGGATATTCTCTTGTAAATGATGCCCCAATTGGGCATTG
JMSF007M02+ CCTTCTGCGGGTATTCAATCATGGATATTCTCTTGTAAATGATGCCCCAATTGGGCATTG
JMSF020F21+ CCTTCTGCGGGTATTCAATCATGGATATTCTCTTGTAAATGATGCCCCAATTGGGCATTG
                      ____________________________________________________________
consensus CCTTCTGCGGGTATTCAATCATGGATATTCTCTTGTAAATGATGCCCCAATTGGGCATTG
 
. : . : . : . : . : . :
JMSF021A22+ GCCGCTTCTCGTAGTCGACAGTGCCATAGCTGTGGACTTGCGAAATGGAAGCGCATGTGA
JMSF007M02+ GCCGCTTCTCGTAGTCGACAGTGCCATAGCTGTGGACTTGCGAAATGGAAGCGCATGTGA
JMSF020F21+ GCCGCTTCTCGTAGTCGACAGTGCCATAGCTGTGGACTTGCGAAATGGAAGCGCATGTGA
                      ____________________________________________________________
consensus GCCGCTTCTCGTAGTCGACAGTGCCATAGCTGTGGACTTGCGAAATGGAAGCGCATGTGA
 
. : . : . : . : . : . :
JMSF021A22+ TGGCTAGGCCCTTGCGGCGGCTCTTCAGTGGATTTAGGAGAGTTAAAGTTGAGAACCCAG
JMSF007M02+ TGGCTAGGCCCTTGCGGCGGCTCTTCAGTGGATTTAGGAGAGTTAAAGTTGAGAACCCAG
JMSF020F21+ TGGCTAGGCCCTTGCGGCGGCTCTTCAGTGGATTTAGGAGAGTTAAAGTTGAGAACCCAG
                      ____________________________________________________________
consensus TGGCTAGGCCCTTGCGGCGGCTCTTCAGTGGATTTAGGAGAGTTAAAGTTGAGAACCCAG
 
. : . : . : . : . : . :
JMSF021A22+ AAGGGAATGGGAGCAAATTGGGGATGGATGATGAGAACGAAAGACGGCGGTGAAGTGGCG
JMSF007M02+ AAGGGAATGGGAGCAAATTGGGGATGGATGATGAGAACGAAAGACGGCGGTGAAGTGGCG
JMSF020F21+ AAGGGAATGGGAGCAAATTGGGGATGGATGATGAGAACGAAAGACGGCGGTGAAGTGGCG
                      ____________________________________________________________
consensus AAGGGAATGGGAGCAAATTGGGGATGGATGATGAGAACGAAAGACGGCGGTGAAGTGGCG
 
. : . : . : . : . : . :
JMSF021A22+ GTGTGGTGGTGGTGACGGGGTGGAGAAACATGTTCTTGAGGCTT
JMSF007M02+ GTGTGGTGGTGGTGACGGGGTGGAGAAACATGTTCTTGAGGCTTAACTCTGTCAGCTCAG
JMSF020F21+ GTGTGGTGGTGGTGACGGGGTGGAGAAACATGTTCTTGAGGCTTAACTCTGTCAGCTCAG
                      ____________________________________________________________
consensus GTGTGGTGGTGGTGACGGGGTGGAGAAACATGTTCTTGAGGCTTAACTCTGTCAGCTCAG
 
. : . : . : . : . : . :
JMSF007M02+ AAGCGC
JMSF020F21+ AAGCGCAGTTTTAGGGTTTCCCGGATTTCGTTCTCATATTAGGATAAGACCACAAAGGCC
                      ____________________________________________________________
consensus AAGCGCAGTTTTAGGGTTTCCCGGATTTCGTTCTCATATTAGGATAAGACCACAAAGGCC