| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF007A22 | Sequence | 292 | 007865 (4) | ref|XP_011085741.1| | 1e-41 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Sesamum indic | 725 | 013889 (5) | ref|XP_009592903.1| | 9e-78 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom |
| JMSF007M02 | Sequence | 380 | 007865 (4) | ref|XP_009774058.1| | 6e-24 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana syl | 685 | 013889 (5) | ref|XP_009592903.1| | 2e-43 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom |
| JMSF020F21 | Sequence | 621 | 007865 (4) | ref|XP_009774058.1| | 2e-57 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana syl | 780 | 013889 (5) | ref|XP_009592903.1| | 4e-61 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom |
| JMSF021A22 | Sequence | 620 | 007865 (4) | ref|XP_011085741.1| | 3e-71 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Sesamum indic | 725 | 013889 (5) | ref|XP_009592903.1| | 9e-78 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom |
This contig is upended
. : . : . : . : . : . :
JMSF007A22+ TCATGTAAAGGTTCAACATCAAATTATAAGGAAGCGTGTTCC
____________________________________________________________
consensus TCATGTAAAGGTTCAACATCAAATTATAAGGAAGCGTGTTCC
. : . : . : . : . : . :
JMSF007A22+ TAGTATAGCCCCTGTTTCTCATTTCATCGAATAAAGATTCGGCCTTCTCCCTCATTCCAA
JMSF021A22+ ATCGAATAAAGATTCGGCCTTCTCCCTCATTCCAA
____________________________________________________________
consensus TAGTATAGCCCCTGTTTCTCATTTCATCGAATAAAGATTCGGCCTTCTCCCTCATTCCAA
. : . : . : . : . : . :
JMSF007A22+ CACGAACATACGCATTCAAGAGCGACCCGTATATTCGTCTGTCCTTTAGCGAATTTGGCA
JMSF021A22+ CACGAACATACGCATTCAAGAGCGACCCGTATATTCGTCTGTCCTTTAGCGAATTTGGCA
JMSF020F21+ TGTCCTTTAGCGAATTTGGCA
____________________________________________________________
consensus CACGAACATACGCATTCAAGAGCGACCCGTATATTCGTCTGTCCTTTAGCGAATTTGGCA
. : . : . : . : . : . :
JMSF007A22+ GGGTGAGGAAGTACTTCTCGGCATTCGAGATTCCATGCACTTTGGAGATCAAATCTAGTT
JMSF021A22+ GGGTGAGGAAGTACTTCTCGGCATTCGAGATTCCATGCACTTTGGAGATCAAATCTAGTT
JMSF020F21+ GGGTGAGGAAGTACTTCTCGGCATTCGAGATTCCATGCACTTTGGAGATCAAATCTAGTT
____________________________________________________________
consensus GGGTGAGGAAGTACTTCTCGGCATTCGAGATTCCATGCACTTTGGAGATCAAATCTAGTT
. : . : . : . : . : . :
JMSF007A22+ GAATAGCAGTGTCACTGGTGGTTATTTTATACCTCTCTGCTCTATCATTAATCCACTCAC
JMSF021A22+ GAATAGCAGTGTCACTGGTGGTTATTTTATACCTCTCTGCTCTATCATTCATCCACTCAC
JMSF020F21+ GAATAGCAGTGTCACTGGTGGTTATTTTATACCTCTCTGCTCTATCATTCATCCACTCAC
____________________________________________________________
consensus GAATAGCAGTGTCACTGGTGGTTATTTTATACCTCTCTGCTCTATCATTCATCCACTCAC
. : . : . : . : . : . :
JMSF007A22+ ACACCTCGA
JMSF021A22+ ACACCTCGAGAGCAAGGTGGTGTCGCCCGAACTTGCGGAGCTTCCTAACGACGAACAAAA
JMSF007M02+ AACGACGAACAAAA
JMSF020F21+ ACACCTCGAGAGCAAGGTGGTGTCGCCCGAACTTGCGGAGCTTCCTAACGACGAACAAAA
____________________________________________________________
consensus ACACCTCGAGAGCAAGGTGGTGTCGCCCGAACTTGCGGAGCTTCCTAACGACGAACAAAA
. : . : . : . : . : . :
JMSF021A22+ GCTCCAGTCTTGAAATCCTCTTGCCTTCATCCTCACACTGGTTTAGCACAGTAGAAGCGC
JMSF007M02+ GCTCCAGTCTTGAAATCCTCTTGCCTTCATCCTCACACTGGTTTAGCACAGTAGAAGCGC
JMSF020F21+ GCTCCAGTCTTGAAATCCTCTTGCCTTCATCCTCACACTGGTTTAGCACAGTAGAAGCGC
____________________________________________________________
consensus GCTCCAGTCTTGAAATCCTCTTGCCTTCATCCTCACACTGGTTTAGCACAGTAGAAGCGC
. : . : . : . : . : . :
JMSF021A22+ CCTTCTGCGGGTATTCAATCATGGATATTCTCTTGTAAATGATGCCCCAATTGGGCATTG
JMSF007M02+ CCTTCTGCGGGTATTCAATCATGGATATTCTCTTGTAAATGATGCCCCAATTGGGCATTG
JMSF020F21+ CCTTCTGCGGGTATTCAATCATGGATATTCTCTTGTAAATGATGCCCCAATTGGGCATTG
____________________________________________________________
consensus CCTTCTGCGGGTATTCAATCATGGATATTCTCTTGTAAATGATGCCCCAATTGGGCATTG
. : . : . : . : . : . :
JMSF021A22+ GCCGCTTCTCGTAGTCGACAGTGCCATAGCTGTGGACTTGCGAAATGGAAGCGCATGTGA
JMSF007M02+ GCCGCTTCTCGTAGTCGACAGTGCCATAGCTGTGGACTTGCGAAATGGAAGCGCATGTGA
JMSF020F21+ GCCGCTTCTCGTAGTCGACAGTGCCATAGCTGTGGACTTGCGAAATGGAAGCGCATGTGA
____________________________________________________________
consensus GCCGCTTCTCGTAGTCGACAGTGCCATAGCTGTGGACTTGCGAAATGGAAGCGCATGTGA
. : . : . : . : . : . :
JMSF021A22+ TGGCTAGGCCCTTGCGGCGGCTCTTCAGTGGATTTAGGAGAGTTAAAGTTGAGAACCCAG
JMSF007M02+ TGGCTAGGCCCTTGCGGCGGCTCTTCAGTGGATTTAGGAGAGTTAAAGTTGAGAACCCAG
JMSF020F21+ TGGCTAGGCCCTTGCGGCGGCTCTTCAGTGGATTTAGGAGAGTTAAAGTTGAGAACCCAG
____________________________________________________________
consensus TGGCTAGGCCCTTGCGGCGGCTCTTCAGTGGATTTAGGAGAGTTAAAGTTGAGAACCCAG
. : . : . : . : . : . :
JMSF021A22+ AAGGGAATGGGAGCAAATTGGGGATGGATGATGAGAACGAAAGACGGCGGTGAAGTGGCG
JMSF007M02+ AAGGGAATGGGAGCAAATTGGGGATGGATGATGAGAACGAAAGACGGCGGTGAAGTGGCG
JMSF020F21+ AAGGGAATGGGAGCAAATTGGGGATGGATGATGAGAACGAAAGACGGCGGTGAAGTGGCG
____________________________________________________________
consensus AAGGGAATGGGAGCAAATTGGGGATGGATGATGAGAACGAAAGACGGCGGTGAAGTGGCG
. : . : . : . : . : . :
JMSF021A22+ GTGTGGTGGTGGTGACGGGGTGGAGAAACATGTTCTTGAGGCTT
JMSF007M02+ GTGTGGTGGTGGTGACGGGGTGGAGAAACATGTTCTTGAGGCTTAACTCTGTCAGCTCAG
JMSF020F21+ GTGTGGTGGTGGTGACGGGGTGGAGAAACATGTTCTTGAGGCTTAACTCTGTCAGCTCAG
____________________________________________________________
consensus GTGTGGTGGTGGTGACGGGGTGGAGAAACATGTTCTTGAGGCTTAACTCTGTCAGCTCAG
. : . : . : . : . : . :
JMSF007M02+ AAGCGC
JMSF020F21+ AAGCGCAGTTTTAGGGTTTCCCGGATTTCGTTCTCATATTAGGATAAGACCACAAAGGCC
____________________________________________________________
consensus AAGCGCAGTTTTAGGGTTTCCCGGATTTCGTTCTCATATTAGGATAAGACCACAAAGGCC