Contig 007859:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014I16Sequence500007859 (3)ref|XP_009620236.1|3e-58PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Nicotian761002553 (3)ref|XP_006346080.1|4e-97PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Solanum
JMFF025D11Sequence591007859 (3)ref|XP_009620236.1|2e-68PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Nicotian723002553 (3)ref|XP_004244333.1|7e-95PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Solanum
JMSF019G07Sequence221007859 (3)ref|XP_009793722.1|2e-04PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Nicotian756002553 (3)ref|XP_006346080.1|1e-99PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Solanum

Alignment

This contig is upended


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JMFF025D11+                                TCATCATACAGAACATATCTCTAGCAGCTTCAACATGGC
                      ____________________________________________________________
consensus                                  TCATCATACAGAACATATCTCTAGCAGCTTCAACATGGC
 
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JMFF014I16+                                                               TTCACAGA
JMFF025D11+           CCTGATTCATATAGCCTGTAATCATAGAGTTCATCACAAGCACTCTATCTTCTTCACAGA
                      ____________________________________________________________
consensus             CCTGATTCATATAGCCTGTAATCATAGAGTTCATCACAAGCACTCTATCTTCTTCACAGA
 
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JMFF014I16+           ATTCATCAAACACTTGTTCTGCAGAATCCAGGCAGCCAGCATTGGAGTACATATGAATCA
JMFF025D11+           ATTCATCAAACACTTGTTCTGCAGAATCCAGGCAGCCAGCATTGGAGTACATATGAATCA
                      ____________________________________________________________
consensus             ATTCATCAAACACTTGTTCTGCAGAATCCAGGCAGCCAGCATTGGAGTACATATGAATCA
 
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JMFF014I16+           GCGAGCTAGAAACGTGAGTATTCGGCTTCACCCCCGCCTTGATTATCCGGGCATGCACTT
JMFF025D11+           GCGAGCTAGAAACGTGAGTATTCGGCTTCACCCCCGCCTTGATTATCCGGGCATGCACTT
                      ____________________________________________________________
consensus             GCGAGCTAGAAACGTGAGTATTCGGCTTCACCCCCGCCTTGATTATCCGGGCATGCACTT
 
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JMFF014I16+           GTTTACCTTCACAAATCGCATTCACGCGAGAACATGCTTTGAGAGCAAAAGTGTAAGTGT
JMFF025D11+           GTTTACCTTCACAAATCGCATTCACGCGAGAACATGCTTTGAGAGCAAAAGTGTAAGTGT
                      ____________________________________________________________
consensus             GTTTACCTTCACAAATCGCATTCACGCGAGAACATGCTTTGAGAGCAAAAGTGTAAGTGT
 
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JMFF014I16+           GGTTATCCTCTCTGATGCCTTCTGCACACATTCTAGCATACATCACCAGCGACTCATTCG
JMFF025D11+           GGTTATCCTCTCTGATGCCTTCTGCACACATTCTAGCATACATCACCAGCGACTCATTCG
                      ____________________________________________________________
consensus             GGTTATCCTCTCTGATGCCTTCTGCACACATTCTAGCATACATCACCAGCGACTCATTCG
 
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JMFF014I16+           CCTGCTTGCCCAGAATCAGGCCTCTGATCATGACATTATACGTGAATGCATCGGGTGACT
JMFF025D11+           CCTGCTTGCCCAGAATCAGGCCTCTGATCATGACATTATACGTGAATGCATCGGGTGACT
                      ____________________________________________________________
consensus             CCTGCTTGCCCAGAATCAGGCCTCTGATCATGACATTATACGTGAATGCATCGGGTGACT
 
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JMFF014I16+           GAATCGATTCAAAGACAGATGAACCATGATCAAGTTCAAATGATCCAACGTAGGATTGCA
JMFF025D11+           GAATCGATTCAAAGACAGATGAACCATGATCAAGTTCAAATGATCCAACGTAGGATTGCA
                      ____________________________________________________________
consensus             GAATCGATTCAAAGACAGATGAACCATGATCAAGTTCAAATGATCCAACGTAGGATTGCA
 
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JMFF014I16+           GCAGCTTTGCTTGGTTCTGTCTGCGTTGAATTGATCCTGAGACGATTAACTGTGCGTGTA
JMFF025D11+           GCAGCTTTGCTTGGTTCTGTCTGCGTTGAATTGATCCTGAGACGATTAACTGTGCGTGTA
JMSF019G07+                              TCTGCGTTGAATTGATCCTGAGACGATTAACTGTGCGTGTA
                      ____________________________________________________________
consensus             GCAGCTTTGCTTGGTTCTGTCTGCGTTGAATTGATCCTGAGACGATTAACTGTGCGTGTA
 
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JMFF014I16+           TTTGTTTGATTTCTGCAGAGTAACGGCACATTTGAAGCAGCAACAGATGGGCGGAAGCGA
JMFF025D11+           TTTGTTTGATTTCTGCAGAGTAACGGCACATTTGAAGCAGCAACAGATGGGCGGAAGCGA
JMSF019G07+           TTTGTTTGATTTCTGCAGAGTAACGGCACATTTGAAGCAGCAACAGATGGGCGGAAGCGA
                      ____________________________________________________________
consensus             TTTGTTTGATTTCTGCAGAGTAACGGCACATTTGAAGCAGCAACAGATGGGCGGAAGCGA
 
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JMFF014I16+           TTCTATTTACAC                                                
JMFF025D11+           TTCTATTTACAC                                                
JMSF019G07+           TTCTATTTACACGAAAGGTTTGAGATTCTGCATTATTATTATTATTATTGTTGTGGTTTA
                      ____________________________________________________________
consensus             TTCTATTTACACGAAAGGTTTGAGATTCTGCATTATTATTATTATTATTGTTGTGGTTTA
 
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JMSF019G07+           TTATTAGGAGAGAAGAATTGGAAGCAAGAGCCATGTAGATGGTCCTTGAGCTTTCACTTC
                      ____________________________________________________________
consensus             TTATTAGGAGAGAAGAATTGGAAGCAAGAGCCATGTAGATGGTCCTTGAGCTTTCACTTC