clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF024A18 | Sequence | 409 | 007856 (12) | emb|CAA75777.1| | 9e-38 | transketolase 1 [Capsicum annuum] | 772 | 000369 (13) | ref|XP_009596626.1| | 5e-67 | PREDICTED: transketolase, chloroplastic [Nicotiana tomentosiformis] |
JMFF037O24 | Sequence | 528 | 007856 (12) | emb|CAA75777.1| | 6e-70 | transketolase 1 [Capsicum annuum] | 758 | 000369 (13) | ref|XP_009386531.1| | 2e-64 | PREDICTED: transketolase, chloroplastic-like [Musa acuminata subsp. malaccensis |
JMFF038L18 | Sequence | 541 | 007856 (12) | emb|CAA75777.1| | 4e-69 | transketolase 1 [Capsicum annuum] | 760 | 000369 (13) | ref|XP_009386531.1| | 2e-64 | PREDICTED: transketolase, chloroplastic-like [Musa acuminata subsp. malaccensis |
JMFF040E06 | Sequence | 527 | 007856 (12) | emb|CAA75777.1| | 6e-70 | transketolase 1 [Capsicum annuum] | 762 | 000369 (13) | ref|XP_009596626.1| | 1e-69 | PREDICTED: transketolase, chloroplastic [Nicotiana tomentosiformis] |
JMFS039F05 | Sequence | 649 | 007856 (12) | emb|CDO97702.1| | 7e-96 | unnamed protein product [Coffea canephora] | |||||
JMFS051B04 | Sequence | 598 | 007856 (12) | emb|CAA75777.1| | 3e-97 | transketolase 1 [Capsicum annuum] | |||||
JMFS103C04 | Sequence | 572 | 007856 (12) | emb|CAA75777.1| | 1e-89 | transketolase 1 [Capsicum annuum] | |||||
JMFS153G01 | Sequence | 615 | 007856 (12) | emb|CAA75777.1| | 2e-101 | transketolase 1 [Capsicum annuum] | |||||
JMSF018N12 | Sequence | 520 | 007856 (12) | emb|CAA75777.1| | 2e-68 | transketolase 1 [Capsicum annuum] | 786 | 000369 (13) | ref|XP_009386531.1| | 7e-76 | PREDICTED: transketolase, chloroplastic-like [Musa acuminata subsp. malaccensis |
JMSF019D13 | Sequence | 411 | 007856 (12) | emb|CDO97702.1| | 2e-18 | unnamed protein product [Coffea canephora] | 759 | 000369 (13) | ref|XP_009386531.1| | 2e-64 | PREDICTED: transketolase, chloroplastic-like [Musa acuminata subsp. malaccensis |
JMSF027P13 | Sequence | 682 | 007856 (12) | emb|CAA75777.1| | 1e-107 | transketolase 1 [Capsicum annuum] | 717 | 000369 (13) | ref|XP_009386531.1| | 4e-89 | PREDICTED: transketolase, chloroplastic-like [Musa acuminata subsp. malaccensis |
JMSF028B02 | Sequence | 616 | 007856 (12) | emb|CDO97702.1| | 2e-70 | unnamed protein product [Coffea canephora] | 762 | 000369 (13) | ref|XP_009386531.1| | 2e-80 | PREDICTED: transketolase, chloroplastic-like [Musa acuminata subsp. malaccensis |
This contig is upended
. : . : . : . : . : . :
JMFS153G01+ CCAACCCAACAGCATNTGC
JMSF027P13+ TCGAGCAGCCAAATGTTTTTCAGCAAGTGCCAACCCAACAGCATTTGC
____________________________________________________________
consensus TCGAGCAGCCAAATGTTTTTCAGCAAGTGCCAACCCAACAGCATTTGC
. : . : . : . : . : . :
JMFS153G01+ AATACCTTGGCCAAGAGGACCAGTGGTGACTTCAACACCAGGGGTCTCAAAGTTCTCAGG
JMFS039F05+ TGGCCAAGAGGACCAGTGGTGACTTCAACACCAGGGGTCTCANAGTTCTCAGG
JMFS051B04+ CTTGGCCAAGAGGACCAGTGGTGACTTCAACACCAGGGGTCTCAAAGTTCTCAGG
JMFS103C04+ CACCAGGGGTCTCAAAGTTCTCAGG
JMSF027P13+ AATACCTTGGCCAAGAGGACCAGTGGTGACTTCAACACCAGGGGTCTCAAAGTTCTCAGG
____________________________________________________________
consensus AATACCTTGGCCAAGAGGACCAGTGGTGACTTCAACACCAGGGGTCTCAAAGTTCTCAGG
. : . : . : . : . : . :
JMFS153G01+ GTGACCAGGGGTCCTGCTTCCCCACTGACGGAAATTCTTCAAATCATCTTCCCTGACAGC
JMFS039F05+ GTGACCAGGGGTCCTGCTTCCCCACTGACGGAAATTCTTCAAATCATCTTCCCTGACAGC
JMFS051B04+ GTGACCAGGGGTCCTGCTTCCCCACTGACGGAAATTCTTCAAATCATCTTCCCTGACAGC
JMFS103C04+ GTGACCAGGGGTCCTGCTTCCCCACTGACGGAAATTCTTCAAATCATCTTCCCTGACAGC
JMSF027P13+ GTGACCAGGGGTCCTGCTTCCCCACTGACGGAAATTCTTCAAATCATCTTCCCTGACAGC
JMFF040E06+ TTCCCTGACAGC
JMFF037O24+ CTTCCCTGACAGC
JMSF018N12+ CTGACAGC
JMFF038L18+ CCCTGACAGC
JMSF028B02+ CATCTTCCCCGACAGC
____________________________________________________________
consensus GTGACCAGGGGTCCTGCTTCCCCACTGACGGAAATTCTTCAAATCATCTTCCCTGACAGC
. : . : . : . : . : . :
JMFS153G01+ ATCGTAGCCAGCAAGGTGAAGCAGGGCGTACTGGAGCATACATCCGTGGCCAGCGGAGAG
JMFS039F05+ ATCGTAGCCAGCAAGGTGAAGCAGGGCGTACTGGAGCATACATCCGTGGCCAGCGGAGAG
JMFS051B04+ ATCGTAGCCAGCAAGGTGAAGCAGGGCGTACTGGAGCATACATCCGTGGCCAGCGGAGAG
JMFS103C04+ ATCGTAGCCAGCAAGGTGAAGCAGGGCGTACTGGAGCATACATCCGTGGCCAGCGGAGAG
JMSF027P13+ ATCGTAGCCAGCAAGGTGAAGCAGGGCGTACTGGAGCATACATCCGTGGCCAGCGGAGAG
JMFF040E06+ ATCGTAGCCAGCAAGGTGAAGCAGGGCGTACTGGAGCATACATCCGTGGCCAGCGGAGAG
JMFF037O24+ ATCGTAGCCAGCAAGGTGAAGCAGGGCGTACTGGAGCATACATCCGTGGCCAGCGGAGAG
JMSF018N12+ ATCGTAGCCAGCAAGGTGAAGCAGGGCGTACTGGAGCATACATCCGTGGCCAGCGGAGAG
JMFF038L18+ ATCGTAGCCAGCAAGGTGAAGCAGGGCGTACTGGAGCATACATCCGTGGCCAGCGGAGAG
JMSF028B02+ ATCGTAGCCAGCAAGGTGAAGCAGGGCGTACTGGAGCATACATCCGTGGCCAGCGGAGAG
____________________________________________________________
consensus ATCGTAGCCAGCAAGGTGAAGCAGGGCGTACTGGAGCATACATCCGTGGCCAGCGGAGAG
. : . : . : . : . : . :
JMFS153G01+ AACGAAGCGGTCACGGTTAAACCAGTAGGGGTTCTTGGGGTTGTACCTCATCACCTCATC
JMFS039F05+ AACGAAGCGGTCACGGTTAAACCAGTAGGGGTTCTTGGGGTTGTACCTCATCACCTCATC
JMFS051B04+ AACGAAGCGGTCACGGTTAAACCAGTAGGGGTTCTTGGGGTTGTACCTCATCACCTCATC
JMFS103C04+ AACGAAGCGGTCACGGTTAAACCAGTAGGGGTTCTTGGGGTTGTACCTCATCACCTCATC
JMSF027P13+ AACGAAGCGGTCACGGTTAAACCAGTAGGGGTTCTTGGGGTTGTACCTCATCACCTCATC
JMFF040E06+ AACGAAGCGGTCACGGTTAAACCAGTAGGGGTTCTTGGGGTTGTACCTCATCACCTCATC
JMFF037O24+ AACGAAGCGGTCACGGTTAAACCAGTAGGGGTTCTTGGGGTTGTACCTCATCACCTCATC
JMSF018N12+ AACGAAGCGGTCACGGTTAAACCAGTAGGGGTTCTTGGGGTTGTACCTCATCACCTCATC
JMFF024A18+ CTCATCACCTCATC
JMFF038L18+ AACGAAGCGGTCACGGTTAAACCAGTAGGGGTTCTTGGGGTTGTACCTCATCACCTCATC
JMSF028B02+ AACGAAGCGGTCACGGTTAAACCAGTAGGGGTTCTTGGGGTTGTACCTCATCACCTCATC
____________________________________________________________
consensus AACGAAGCGGTCACGGTTAAACCAGTAGGGGTTCTTGGGGTTGTACCTCATCACCTCATC
. : . : . : . : . : . :
JMFS153G01+ GTACAAGATGTGACCCATGGGAGCACAGCCCATGGGAAGACCAGGGTGCCCGGAGTTCGC
JMFS039F05+ GTACAAGATGTGACCCATGGGAGCACAGCCCATGGGAAGACCAGGGTGCCCGGAGTTCGC
JMFS051B04+ GTACAAGATGTGACCCATGGGAGCACAGCCCATGGGAAGACCAGGGTGCCCGGAGTTCGC
JMFS103C04+ GTACAAGATGTGACCCATGGGAGCACAGCCCATGGGAAGACCAGGGTGCCCGGAGTTCGC
JMSF027P13+ GTACAAGATGTGACCCATGGGAGCACAGCCCATGGGAAGACCAGGGTGCCCGGAGTTCGC
JMFF040E06+ GTACAAGATGTGACCCATGGGAGCACAGCCCATGGGAAGACCAGGGTGCCCGGAGTTCGC
JMFF037O24+ GTACAAGATGTGACCCATGGGAGCACAGCCCATGGGAAGACCAGGGTGCCCGGAGTTCGC
JMSF018N12+ GTACAAGATGTGACCCATGGGAGCACAGCCCATGGGAAGACCAGGGTGCCCGGAGTTCGC
JMFF024A18+ GTACAAGATGTGACCCATGGGAGCACAGCCCATGGGAAGACCAGGGTGCCCGGAGTTCGC
JMFF038L18+ GTACAAGATGTGACCCATGGGAGCACAGCCCATGGGAAGACCAGGGTGCCCGGAGTTCGC
JMSF028B02+ GTACAAGATGTGACCCATGGGAGCACAGCCCATGGGAAGACCAGGGTGCCCGGAGTTCGC
____________________________________________________________
consensus GTACAAGATGTGACCCATGGGAGCACAGCCCATGGGAAGACCAGGGTGCCCGGAGTTCGC
. : . : . : . : . : . :
JMFS153G01+ CTTCTCTACGGCGTCAATAGACAGGAATCTGATCGTGTTCACCGACTTCTCAACCAGGGC
JMFS039F05+ CTTCTCTACGGCGTCAATAGACAGGAATCTGATCGTGTTCACCGACTTCTCAACCAGGGC
JMFS051B04+ CTTCTCTACGGCGTCAATAGACAGGAATCTGATCGTGTTCACCGACTTCTCAACCAGGGC
JMFS103C04+ CTTCTCTACGGCGTCAATAGACAGGAATCTGATCGTGTTCACCGACTTCTCAACCAGGGC
JMSF027P13+ CTTCTCTACGGCGTCAATAGACAGGAATCTGATCGTGTTCACCGACTTCTCAACCAGGGC
JMFF040E06+ CTTCTCTACGGCGTCAATAGACAGGAATCTGATCGTGTTCACCGACTTCTCAACCAGGGC
JMFF037O24+ CTTCTCTACGGCGTCAATAGACAGGAATCTGATCGTGTTCACCGACTTCTCAACCAGGGC
JMSF018N12+ CTTCTCTACGGCGTCAATAGAAAGGAATCTGATCGTGTTCACCGACTTCTCAACCAGGGC
JMFF024A18+ CTTCTCTACGGCGTCAATAGACAGGAATCTGATCGTGTTCACCGACTTCTCAACCAGGGC
JMFF038L18+ CTTCTCTACGGCGTCAATAGACAGGAATCTGATCGTGTTCACCGACTTCTCAACCAGGGC
JMSF028B02+ CTTCTCTACGGCGTCAATAGACAGGAATCTGATCGTGTTCACCGACTTCTCAACCAGGGC
JMSF019D13+ GGCGTCAATAGACAGGAATCTGATCGTGTTCACCGACTTCTCAACCAGGGC
____________________________________________________________
consensus CTTCTCTACGGCGTCAATAGACAGGAATCTGATCGTGTTCACCGACTTCTCAACCAGGGC
. : . : . : . : . : . :
JMFS153G01+ AGTGTCAGTCTTCTCCAAAGTCTCGATTGCAGCAGAAGCCCGCACAGTTGAGGAGCGCTG
JMFS039F05+ AGTGTCAGTCTTCTCCAAAGTCTCGATTGCAGCAGAAGCCCGCACAGTTGAGGAGCGCTG
JMFS051B04+ AGTGTCAGTCTTCTCCAAAGTCTCGATTGCAGCAGAAGCCCGCACAGTTGAGGAGCGCTG
JMFS103C04+ AGTGTCAGTCTTCTCCAAAGTCTCGATTGCAGCAGAAGCCCGCACAGTTGAGGAGCGCTG
JMSF027P13+ AGTGTCAGTCTTCTCCAAAGTCTCGATTGCAGCAGAAGCCCGCACAGTTGAGGAGCGCTG
JMFF040E06+ AGTGTCAGTCTTCTCCAAAGTCTCGATTGCAGCAGAAGCCCGCACAGTTGAGGAGCGCTG
JMFF037O24+ AGTGTCAGTCTTCTCCAAAGTCTCGATTGCAGCAGAAGCCCGCACAGTTGAGGAGCGCTG
JMSF018N12+ AGTGTCAGTCTTCTCCAAAGTCTCGATTGCAGCAGAAGCCCGCACAGTTGAGGAGCGCTG
JMFF024A18+ AGTGTCAGTCTTCTCCAAAGTCTCGATTGCAGCAGAAGCCCGCACAGTTGAGGAGCGCTG
JMFF038L18+ AGTGTCAGTCTTCTCCAAAGTCTCGATTGCAGCAGAAGCCCGCACAGTTGAGGAGCGCTG
JMSF028B02+ AGTGTCAGTCTTCTCCAAAGTCTCGATTGCAGCAGAAGCCCGCACAGTTGAGGAGCGCTG
JMSF019D13+ AGTGTCAGTCTTCTCCAAAGTCTCGATTGCAGCAGAAGCCCGCACAGTTGAGGAGCGCTG
____________________________________________________________
consensus AGTGTCAGTCTTCTCCAAAGTCTCGATTGCAGCAGAAGCCCGCACAGTTGAGGAGCGCTG
. : . : . : . : . : . :
JMFS153G01+ GGGGGCAGGGACGGCGGCGGAGGAAGGGACGGCGCGGCGGCCGGCCTTGAGCCCGCTGAA
JMFS039F05+ GGGGGCAGGGACGGCGGCGGAGGAAGGGACGGCGCGGCGGCCGGCCTTGAGCCCGCTGAA
JMFS051B04+ GGGGGGAGGGACGGCGGCGGAGGAAGGGACGGCGCGGCGGCCGGCCTTGAGCCCGCTGAA
JMFS103C04+ GGGGGCAGGGACGGCGGCGGAGGAAGGGACGGCGCGGCGGCCGGCCTTGAGCCCGCTGAA
JMSF027P13+ GGGGGCAGGGACGGCGGCGGAGGAAGGGACGGCGCGGCGGCCGGCCTTGAGCCCGCTGAA
JMFF040E06+ GGGGGCAGGGACGGCGGCGGAGGAAGGGACGGCGCGGCGGCCGGCCTTGAGCCCGCTGAA
JMFF037O24+ GGGGGCAGGGACGGCGGCGGAGGAAGGGACGGCGCGGCGGCCGGCCTTGAGCCCGCTGAA
JMSF018N12+ GGGGGCAGGGACGGCGGCGGAGGAAGGGACGGCGCGGCGGCCGGCCTTGAGCCCGCTGAA
JMFF024A18+ GGGGGCAGGGACGGCGGCGGAGGAAGGGACGGCGCGGCGGCCGGCCTTGAGCCCGCTGAA
JMFF038L18+ GGGGGCAGGGACGGCGGCGGAGGAAGGGACGGCGCGGCGGCCGGCCTTGAGCCCGCTGAA
JMSF028B02+ GGGGGCAGGGACGGCGGCGGAGGAAGGGACGGCGCGGCGGCCGGCCTTGAGCCCGCTGAA
JMSF019D13+ GGGGGCAGGGACGGCGGCGGAGGAAGGGACGGCGCGGCGGCCGGCCTTGAGCCCGCTGAA
____________________________________________________________
consensus GGGGGCAGGGACGGCGGCGGAGGAAGGGACGGCGCGGCGGCCGGCCTTGAGCCCGCTGAA
. : . : . : . : . : . :
JMFS153G01+ AGTGGGGAAAGAAAGGGAGGGGGTGTGGAGCTGAGGGGTGGCGGAAGCGGAGCCATGGCG
JMFS039F05+ AGTGGGGAAAGAAAGGGAGGGGGTGTGGAGCTGAGGGGTGGCGGAAGCGGAGCCATGGCG
JMFS051B04+ AGTGGGGAAAGAAAGGGAGGGGGTGTGGAGCTGAGGGGTGGCGGAAGCGGAGCCATGGCG
JMFS103C04+ AGTGGGGAAAGAAAGGGAGGGGGTGTGGAGCTGAGGGGTGGCGGAAGCGGAGCCATGGCG
JMSF027P13+ AGTGGGGAAAGAAAGGGAGGGGGTGTGGAGCTGAGGGGTGGCGGAAGCGGAGCCATGGCG
JMFF040E06+ AGTGGGGAAAGAAAGGGAGGGGGTGTGGAGCTGAGGGGTGGCGGAAGCGGAGCCATGGCG
JMFF037O24+ AGTGGGGAAAGAAAGGGAGGGGGTGTGGAGCTGAGGGGTGGCGGAAGCGGAGCCATGGCG
JMSF018N12+ AGTGGGGAAAGAAAGGGAGGGGGTGTGGAGCTGAGGGGTGGCGGAAGCGGAGCCATGGCG
JMFF024A18+ AGTGGGGAAAGAAAGGGAGGGGGTGTGGAGCTGAGGGGTGGCGGAAGCGGAGCCATGGCG
JMFF038L18+ AGTGGGGAAAGAAAGGGAGGGGGTGTGGAGCTGAGGGGTGGCGGAAGCGGAGCCATGGCG
JMSF028B02+ AGTGGGGAAAGAAAGGGAGGGGGTGTGGAGCTGAGGGGTGGCGGAAGCGGAGCCATGGCG
JMSF019D13+ AGTGGGGAAAGAAAGGGAGGGGGTGTGGAGCTGAGGGGTGGCGGAAGCGGAGCCATGGCG
____________________________________________________________
consensus AGTGGGGAAAGAAAGGGAGGGGGTGTGGAGCTGAGGGGTGGCGGAAGCGGAGCCATGGCG
. : . : . : . : . : . :
JMFS153G01+ GGGGATGGAACGGGAGAGGATGACTTGAGAGAGAGTGACAGAAGAAATTGAAGCCA
JMFS039F05+ GGGGATGGAACGGGAGAGGATGACTTGAGAGAGAGTGACAGAAGAAATTGAAGCCATGGC
JMFS051B04+ GGGGATGGAACGGGAGAGGATGACTTGAGAGAGAGTGACAGAAGAAATTGAAGCCATGGC
JMFS103C04+ GGGGATGGAACGGGAGAGGATGACTTGAGAGAGAGTGACAGAAGAAATTGAAGCCATGGC
JMSF027P13+ GGGGATGGAACGGGAGAGGATGACTTGAGAGAGAGTGACAGAAGAAATTGAAGCCATGGC
JMFF040E06+ GGGGATGGAACGGGAGAGGATGACTTGAGAGAGAGTGACAGAAGAAATTGAAGCCATGGC
JMFF037O24+ GGGGATGGAACGGGAGAGGATGACTTGAGAGAGAGTGACAGAAGAAATTGAAGCCATGGC
JMSF018N12+ GGGGATGGAACGGGAGAGGATGACTTGAGAGAGAGTGACAGAAGAAATTGAAGCCATGGC
JMFF024A18+ GGGGATGGAACGGGAGAGGATGACTTGAGAGAGAGTGACAGAAGAAATTGAAGCCATGGC
JMFF038L18+ GGGGATGGAACGGGAGAGGATGACTTGAGAGAGAGTGACAGAAGAAATTGAAGCCATGGC
JMSF028B02+ GGGGATGGAACGGGAGAGGATGACTTGAGAGAGAGTGACAGAAGAAATTGAAGCCATGGC
JMSF019D13+ GGGGATGGAACGGGAGAGGATGACTTGAGAGAGAGTGACAGAAGAAATTGAAGCCATGGC
____________________________________________________________
consensus GGGGATGGAACGGGAGAGGATGACTTGAGAGAGAGTGACAGAAGAAATTGAAGCCATGGC
. : . : . : . : . : . :
JMFS039F05+ TGAGAGGGTTAGA
JMFS051B04+ TGA
JMFS103C04+ TGAGAGG
JMSF027P13+ TGAGAGGGTTAGAGAGAGAGAGAGTGTGTGTGT
JMFF040E06+ TGAGAGGGTTAGAGAGAGAGAGAGTGTGTGTGTGT
JMFF037O24+ TGAGAGGGTTAGAGAGAGAGAGAGTGTGTGTGTGT
JMSF018N12+ TGAGAGGGTTAGAGAGAGAGAGAGTGTGTGT
JMFF024A18+ TGAGAGGGTTAGAGAGAGAGAGAGTGTGTGTGTGT
JMFF038L18+ TGAGAGGGTTAGAGAGAGAGAGAGTGTGTGTGTGT
JMSF028B02+ TGAGAGGGTTAGAGAGAGAGAGAGTGTGTGTGTGGTGAAATGAGAGTAGAGGAAGAAGAT
JMSF019D13+ TGAGAGGGTTAGAGAGAGAGAGAGTGTGTGTGTGGTGAAATGAGAGTAGAGGAAGAAGAT
____________________________________________________________
consensus TGAGAGGGTTAGAGAGAGAGAGAGTGTGTGTGTGTTGAAATGAGAGTAGAGGAAGAAGAT
. : . : . : . : . : . :
JMSF028B02+ ATACGGAAGAGTAAGGTGAGCGGTTGGTTAGCCTTTGGAGAGAGAAAGGGGCTATGAC
JMSF019D13+ ATACGGAAGAGTAAGGTGAGCGGTTGGTTAGCCTTTGGAGAGAGAAAGGGGCTATGACCC
____________________________________________________________
consensus ATACGGAAGAGTAAGGTGAGCGGTTGGTTAGCCTTTGGAGAGAGAAAGGGGCTATGACCC