Contig 007848:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009O06Sequence531007848 (3)gb|ADF87507.1|2e-54ketol-acid reductoisomerase [Catharanthus roseus]325016934ref|XP_002280094.1|1e-08PREDICTED: ketol-acid reductoisomerase, chloroplastic [Vitis vinifera] emb|CAN6
JMFF018A08Sequence519007848 (3)gb|ADF87507.1|8e-54ketol-acid reductoisomerase [Catharanthus roseus]245015918
JMSF018H22Sequence472007848 (3)gb|ADF87507.1|5e-40ketol-acid reductoisomerase [Catharanthus roseus]825013635 (15)ref|XP_006377362.1|5e-152hypothetical protein POPTR_0011s05250g [Populus trichocarpa] gb|ERP55159.1| hypo

Alignment

This contig is upended


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JMFF018A08+                                   TCAGATTTTGCTTCAGCAAGAGAATCCCTCAAATTT
JMFF009O06+                 CCAATCTTGACTACAATGTCAGATTTTGCTTCAGCAAGAGAATCCCTCAAATTT
                      ____________________________________________________________
consensus                   CCAATCTTGACTACAATGTCAGATTTTGCTTCAGCAAGAGAATCCCTCAAATTT
 
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JMFF018A08+           TGAGCTTGAGCAGGTCCCTGTGAACCCCAGCCAATAACTCCAATCTGCTTAATTCCCTTG
JMFF009O06+           TGAGCTTGAGCAGGTCCCTGTGAACCCCAGCCAATAACTCCAATCTGCTTAATTCCCTTG
JMSF018H22+                         TCCCTGTGAACCCCAGCCAATAACTCCAATCTGCTTAATTCCCTTG
                      ____________________________________________________________
consensus             TGAGCTTGAGCAGGTCCCTGTGAACCCCAGCCAATAACTCCAATCTGCTTAATTCCCTTG
 
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JMFF018A08+           AATGCATCCGGCAACAGATTGAACAAATCCCTTCCTCCTCTCACAATGTACTCATCGTGG
JMFF009O06+           AATGCATCCGGCAACAGATTGAACAAATCCCTTCCTCCTCTCACAATGTACTCATCGTGG
JMSF018H22+           AATGCATCCGGCAACAGATTGAACAAATCCCTTCCTCCTCTCACAATGTACTCATCGTGG
                      ____________________________________________________________
consensus             AATGCATCCGGCAACAGATTGAACAAATCCCTTCCTCCTCTCACAATGTACTCATCGTGG
 
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JMFF018A08+           CCAGCGAGGGAGACTTTCTCCTTCTTAAATACGGAGGTCTCGAAATCGAGGGAAGTCGGC
JMFF009O06+           CCAGCGAGGGAGACTTTCTCCTTCTTAAATACGGAGGTCTCGAAATCGAGGGAAGTCGGC
JMSF018H22+           CCAGCGAGGGAGACTTTCTCCTTCTTAAATACGGAGGTCTCGAAATCGAGGGAAGTCGGC
                      ____________________________________________________________
consensus             CCAGCGAGGGAGACTTTCTCCTTCTTAAATACGGAGGTCTCGAAATCGAGGGAAGTCGGC
 
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JMFF018A08+           GACTTGATGGAGGCTGGAGCGGCGACCATGCGAGCTGCGAGTGCAGAGCCGGAGGTCGAG
JMFF009O06+           GACTTGATGGAGGCTGGAGCGGCGACCATGCGAGCTGCGAGTGCAGAGCCGGAGGTCGAG
JMSF018H22+           GACTTGATGGAGGCTGGAGCGGCGACCATGCGAGCTGCGAGTGCAGAGCCGGAGGTCGAG
                      ____________________________________________________________
consensus             GACTTGATGGAGGCTGGAGCGGCGACCATGCGAGCTGCGAGTGCAGAGCCGGAGGTCGAG
 
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JMFF018A08+           CGAATGGCCGGAAGAGCCCGAGCCCGAAGCGATCTTAAGGAAGGGTTGGAGGAAAAAATT
JMFF009O06+           CGAATGGCCGGAAGAGCCCGAGCCCGAAGCGATCTTAAGGAAGGGTTGGAGGAAAAAATT
JMSF018H22+           CGAATGGCCGGAAGAGCCCGAGCCCGAAGCGATCTTAAGGAAGGGTTGGAGGAAAAAATT
                      ____________________________________________________________
consensus             CGAATGGCCGGAAGAGCCCGAGCCCGAAGCGATCTTAAGGAAGGGTTGGAGGAAAAAATT
 
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JMFF018A08+           GATCCTAGGCTGTGTGGGACGGCTGCAGTAGACGGCTTTAGGGTTTTAGAGGCGGTGGCG
JMFF009O06+           GATCCTAGGCTGTGTGGGACGGCTGCAGTAGACGGCTTTAGGGTTTTAGAGGCGGTGGCG
JMSF018H22+           GATCCTAGGCTGTGTGGGACGGCTGCAGTAGACGGCTTTAGGGTTTTAGAGGCGGTGGCG
                      ____________________________________________________________
consensus             GATCCTAGGCTGTGTGGGACGGCTGCAGTAGACGGCTTTAGGGTTTTAGAGGCGGTGGCG
 
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JMFF018A08+           GAAGAGGAGGAGGCGGATATAGAGAAGGAAGTCGGCGCCGGCGCCGGCATGAGTAGTTAT
JMFF009O06+           GAAGAGGAGGAGGCGGATATAGAGAAGGAAGTCGGCGCCGGCGCCGCCATGAGTAGTTAT
JMSF018H22+           GAAGAGGAGGAGGCGGATATAGAGAAGGAAGTCGGCGCCGGCGCCGCCATGAGTAGTTAT
                      ____________________________________________________________
consensus             GAAGAGGAGGAGGCGGATATAGAGAAGGAAGTCGGCGCCGGCGCCGCCATGAGTAGTTAT
 
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JMFF018A08+           ACGAGGTTGAGGAAAAATGGGATGCGGCGACTGTGCGTGAGGGGAAAT            
JMFF009O06+           ACGAGGTTGAGGAAAAATGGGATGCGGCGACTGTGCGTGAGGGGAAATGAGATTTTT   
JMSF018H22+           ACGAGGTTGAGGAAAAATGGGATGCGGCGACTGTGCGTGAGGGGAAATGAGATTTTTGAC
                      ____________________________________________________________
consensus             ACGAGGTTGAGGAAAAATGGGATGCGGCGACTGTGCGTGAGGGGAAATGAGATTTTTGAC