Contig 007844:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001G10Sequence341007844 (5)gb|AFW90598.1|3e-22E3 ubiquitin ligase [Solanum tuberosum]667007844 (5)ref|XP_004232585.1|3e-31PREDICTED: RING-H2 finger protein ATL8-like [Solanum lycopersicum]
JMFN003K14Sequence623007844 (5)emb|CDP01769.1|1e-61unnamed protein product [Coffea canephora]
JMFN008E21Sequence638007844 (5)emb|CDP01769.1|2e-61unnamed protein product [Coffea canephora]
JMSF018B04Sequence248007844 (5)ref|XP_010270525.1|1e-09PREDICTED: RING-H2 finger protein ATL80 [Nelumbo nucifera]716017120ref|XP_009775127.1|2e-41PREDICTED: RING-H2 finger protein ATL80-like [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001G10-                       TTCTTTTTTTATACTTTGACTACTATGTACAGTGCCAACTTATATAC
                      ____________________________________________________________
consensus                          TTCTTTTTTTATACTTTGACTACTATGTACAGTGCCAACTTATATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001G10-          GCAAATCCTAATCAAGGAGAGTTTGAACGGTGATTGACATCTCTTCTTCCCCTGCCAAAC
                      ____________________________________________________________
consensus             GCAAATCCTAATCAAGGAGAGTTTGAACGGTGATTGACATCTCTTCTTCCCCTGCCAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001G10-          CCTACCCGAATACCCGGAACTACAATCAAGGCCGCAGCTCCTCCGCTAACGGCGGAGCTG
                      ____________________________________________________________
consensus             CCTACCCGAATACCCGGAACTACAATCAAGGCCGCAGCTCCTCCGCTAACGGCGGAGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001G10-          TTACTAGACAAGCCGGAGTTCTCAGATGGCGTGGCCATGCCGGAATTGTTTGCTCCCACC
JMFN008E21+                                                              GCTCCCACC
                      ____________________________________________________________
consensus             TTACTAGACAAGCCGGAGTTCTCAGATGGCGTGGCCATGCCGGAATTGTTTGCTCCCACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001G10-          CTCGCATAAACTGAATTGTCAGATTACATGCTACAATTGAACTATTTCCAGTTAAAGTAG
JMFN008E21+           CTCGCATAAACTGAATTGTCAGATTACATGCTACAATTGAACTATTTCCAGTTAAAGTAG
                      ____________________________________________________________
consensus             CTCGCATAAACTGAATTGTCAGATTACATGCTACAATTGAACTATTTCCAGTTAAAGTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001G10-          AATATTAATGGCGCTTTGAGATTGTTCCCCGGCTCCGGCGGGCGAGACCGACGGAATTTC
JMFN008E21+           AATATTAATGGCGCTTTGAGATTGTTCCCCGGCTCCGGCGGGCGAGACCGACGGAATTTC
                      ____________________________________________________________
consensus             AATATTAATGGCGCTTTGAGATTGTTCCCCGGCTCCGGCGGGCGAGACCGACGGAATTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001G10-          CTTGCAGCCGCACTTCCGGCAGCGGGCGACGACGAGGATCTGCCGGCACGAGGGGCAGGA
JMFN003K14+                 GCCGCACTTCCGGCAGCGGGCGACGACGAGGATCTGCCGGCACGAGGGGCAGGA
JMFN008E21+           CTTGCAGCCGCACTTCCGGCAGCGGGCGACGACGAGGATCTGCCGGCACGAGGGGCAGGA
                      ____________________________________________________________
consensus             CTTGCAGCCGCACTTCCGGCAGCGGGCGACGACGAGGATCTGCCGGCACGAGGGGCAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001G10-          GGAGTGGGACCCGAGCCAGGTGTCGATGCATTGCACATGGAAGCCGTGGCGACACTGCGG
JMFN003K14+           GGAGTGGGACCCGAGCCAGGTGTCGATGCATTGCACATGGAAGCCGTGGCGACACTGCGG
JMFN008E21+           GGAGTGGGACCCGAGCCAGGTGTCGATGCATTGCACATGGAAGCCGTGGCGACACTGCGG
                      ____________________________________________________________
consensus             GGAGTGGGACCCGAGCCAGGTGTCGATGCATTGCACATGGAAGCCGTGGCGACACTGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001G10-          CAGCACTCGGATCTCGTCGCCTTCCTCGTACTCCGTCAGGCATATGGCGCAATCCCGCCG
JMFN003K14+           CAGCACTCGGATCTCGTCGCCTTCCTCGTACTCCGTCAGGCATATGGCGCAAT-CCGCCG
JMFN008E21+           CAGCACTCGGATCTCGTCGCCTTCCTCGTACTCCGTCAGGCATATGGCGCAAT-CCGCCG
                      ____________________________________________________________
consensus             CAGCACTCGGATCTCGTCGCCTTCCTCGTACTCCGTCAGGCATATGGCGCAAT-CCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001G10-          GGATTTCCTTCTCGGCGGCGGCGGCGAAGGAGGGGCCGTAAGTGAACTTCGGCAGCGACC
JMFN003K14+           GGATTTCCTTCTCGGCGGCGGCGGCGAAGGAGGGGCCGTAAGTGAACTTCGGCAGCGACC
JMFN008E21+           GGATTTCCTTCTCGGCGGCGGCGGCGAAGGAGGGGCCGTAAGTGAACTTCGGCAGCGACC
JMFF001G10+                             CGGCGGCGAAGGAGGGGCCGTAAGTGAACTTCGGCAGCGACC
                      ____________________________________________________________
consensus             GGATTTCCTTCTCGGCGGCGGCGGCGAAGGAGGGGCCGTAAGTGAACTTCGGCAGCGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001G10-          GGAGCACTTTCTTCTTCAGGCCTTTGTTCGACGACGGCTGTCCGCTTGCGCCGCCGTTTG
JMFN003K14+           GGAGCACTTTCTTCTTCAGGCCTTTGTTCGACGACGGCTGTCCGCTTGCGCCGCCGTTTG
JMFN008E21+           GGAGCACTTTCTTCTTCAGGCCTTTGTTCGACGACGGCTGTCCGCTTGCGCCGCCGTTTG
JMFF001G10+           GGAGCACTTTCTTCTTCAGGCCTTTGTTCGACGACGGCTGTCCGCTTGCGCCGCCGTTTG
JMSF018B04+                                                               GCCGTTTG
                      ____________________________________________________________
consensus             GGAGCACTTTCTTCTTCAGGCCTTTGTTCGACGACGGCTGTCCGCTTGCGCCGCCGTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001G10-          CCCCGGCGCGGATCCTCCGG                                        
JMFN003K14+           CCCCGGCGCGGATCCTCCGGAGCCACGCACACCTAGCTACCATAACAAGCCCTACCACAC
JMFN008E21+           CCCCGGCGCGGATCCTCCGGAGCCACGCACACCTAGCTACCATAACAAGCCCTACCACAC
JMFF001G10+           CCCCGGCGCGGATCCTCCGGAGCCACGCACACCTAGCTACCATAACAAGCCCTACCACAC
JMSF018B04+           CCCCGGCGCGGATCCTCCGGAGCCACGCACACCTAGCTACCATAACAAGCCCTACCACAC
                      ____________________________________________________________
consensus             CCCCGGCGCGGATCCTCCGGAGCCACGCACACCTAGCTACCATAACAAGCCCTACCACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN003K14+           ATATCACGGCGCACAGTAGCGCCGCTAGGATGACTATAAAATCAGACTCCGGAGTTGCTG
JMFN008E21+           ATATCACGGCGCACAGTAGCGCCGCTAGGATGACTATAAAATCAGACTCCGGAGTTGCTG
JMFF001G10+           ATATCACGGCGCACAGTAGCGCCGCTAGGATGACTATAAAATCAGACTCCGGAGTTGCTG
JMSF018B04+           ATATCACGGCGCACAGTAGCGCCGCTAGGATGACTATAAAATCAGACTCCGGAGTTGCTG
                      ____________________________________________________________
consensus             ATATCACGGCGCACAGTAGCGCCGCTAGGATGACTATAAAATCAGACTCCGGAGTTGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN003K14+           ACGACGACGGTGGCTCCGTCGCCGCCGTCTTCGTCGGCGACGGTGGATTCGGTGATG   
JMFN008E21+           ACGACGACGGTGGCTCCGTCGCCGCCGTCTTCGTCGGCGACGGTGGATTCGGTGATGAGT
JMFF001G10+           ACGACGACGGTGGCTCCGTCGCCGCCGTCTTCGTCGGCGACGGTGGATTCGGTGATGAGT
JMSF018B04+           ACGACGACGGTGGCTCCGTCGCCGCCGTCTTCGTCGGCGACGGTGGATTCGGTGATGAGT
                      ____________________________________________________________
consensus             ACGACGACGGTGGCTCCGTCGCCGCCGTCTTCGTCGGCGACGGTGGATTCGGTGATGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008E21+           GGTTGCCGGAGAGAAATCTACGTGGAAG                                
JMFF001G10+           GGTTGCCGGAGAGAAATCTACGTGGAAGAGCCATATAAAGTATGAAATATGAAGTTCAC 
JMSF018B04+           GGTTGCCGGAGAGAAATCTACGTGGAAGAGCCATATAAAGTATGAAATATGAAGTTCACC
                      ____________________________________________________________
consensus             GGTTGCCGGAGAGAAATCTACGTGGAAGAGCCATATAAAGTATGAAATATGAAGTTCACC