Contig 007839:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017D12Sequence554007839 (4)ref|NP_001235984.1|2e-74uncharacterized protein LOC100526919 [Glycine max] gb|ACU15939.1| unknown [Glyci617007839 (4)ref|NP_001235984.1|4e-74uncharacterized protein LOC100526919 [Glycine max] gb|ACU15939.1| unknown [Glyci
JMSF033H23Sequence641007839 (4)ref|NP_001235984.1|1e-73uncharacterized protein LOC100526919 [Glycine max] gb|ACU15939.1| unknown [Glyci590007839 (4)ref|NP_001235984.1|6e-74uncharacterized protein LOC100526919 [Glycine max] gb|ACU15939.1| unknown [Glyci

Alignment

This contig is upended


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rJMSF033H23+                                                          GCTCTAAACAAA
rJMSF017D12+                                                        GGGCTCTAAACAAA
JMSF033H23-                                                           GCTCTAAACAAA
JMSF017D12-                                                           GCTCTAAACAAA
                      ____________________________________________________________
consensus                                                           GGGCTCTAAACAAA
 
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rJMSF033H23+          CCCCAATTCGAACTCTGCGCTTTTAGCTGTCGGAACCGATCCCTAACGTAAACGGAATGG
rJMSF017D12+          CCCCAATTCGAACTCTGCGCTTTTAGCTGTCGGAACCGATCCCTAACGTAAACGGAATGG
JMSF033H23-           CCCCAATTCGAACTCTGCGCTTTTAGCTGTCGGAACCGATCCCTAACGTAAACGGAATGG
JMSF017D12-           CCCCAATTCGAACTCTGCGCTTTTAGCTGTCGGAACCGATCCCTAACGTAAACGGAATGG
                      ____________________________________________________________
consensus             CCCCAATTCGAACTCTGCGCTTTTAGCTGTCGGAACCGATCCCTAACGTAAACGGAATGG
 
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rJMSF033H23+          CATCTATGGACACTGACGTGGCAATGGTTCCGGCCGGCGAGGGTTCCAGCGGCGCTACTC
rJMSF017D12+          CATCTCTGGACACTGACGTGGCAATGGTTCCGGCCGGCGAGGGTTCCAGCGGCGCTACTC
JMSF033H23-           CATCTATGGACACTGACGTGGCAATGGTTCCGGCCGGCGAGGGTTCCAGCGGCGCTACTC
JMSF017D12-           CATCTCTGGACACTGACGTGGCAATGGTTCCGGCCGGCGAGGGTTCCAGCGGCGCTACTC
                      ____________________________________________________________
consensus             CATCTCTGGACACTGACGTGGCAATGGTTCCGGCCGGCGAGGGTTCCAGCGGCGCTACTC
 
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rJMSF033H23+          CGTCGTCTTCAACGAAGAAAGGAAAGAAATTCGAGATCAAAAAGTGGAATGCCGTTTCCC
rJMSF017D12+          CGTCGTCTTCAACGAAGAAAGGAAAGAAATTCGAGATCAAAAAGTGGAATGCCGTTTCCC
JMSF033H23-           CGTCGTCTTCAACGAAGAAAGGAAAGAAATTCGAGATCAAAAAGTGGAATGCCGTTTCCC
JMSF017D12-           CGTCGTCTTCAACGAAGAAAGGAAAGAAATTCGAGATCAAAAAGTGGAATGCCGTTTCCC
                      ____________________________________________________________
consensus             CGTCGTCTTCAACGAAGAAAGGAAAGAAATTCGAGATCAAAAAGTGGAATGCCGTTTCCC
 
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rJMSF033H23+          TCTGGGCTTGGGATATTGTGGTTGATAATTGTGCTATTTGTAGGAACCATATCATGGATC
rJMSF017D12+          TCTGGGCTTGGGATATTGTGGTTGATAATTGTGCTATTTGTAGGAACCATATCATGGATC
JMSF033H23-           TCTGGGCTTGGGATATTGTGGTTGATAATTGTGCTATTTGTAGGAACCATATCATGGATC
JMSF017D12-           TCTGGGCTTGGGATATTGTGGTTGATAATTGTGCTATTTGTAGGAACCATATCATGGATC
                      ____________________________________________________________
consensus             TCTGGGCTTGGGATATTGTGGTTGATAATTGTGCTATTTGTAGGAACCATATCATGGATC
 
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rJMSF033H23+          TCTGTATCGAGTGCCAAGCTAATCAAGCTAGCGCCACAAGTGAGGAATGCACTGTTGCTT
rJMSF017D12+          TCTGTATCGAGTGCCAAGCTAATCAAGCTAGCGCCACAAGTGAGGAATGCACTGTTGCTT
JMSF033H23-           TCTGTATCGAGTGCCAAGCTAATCAAGCTAGCGCCACAAGTGAGGAATGCACTGTTGCTT
JMSF017D12-           TCTGTATCGAGTGCCAAGCTAATCAAGCTAGCGCCACAAGTGAGGAATGCACTGTTGCTT
                      ____________________________________________________________
consensus             TCTGTATCGAGTGCCAAGCTAATCAAGCTAGCGCCACAAGTGAGGAATGCACTGTTGCTT
 
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rJMSF033H23+          GGGGAGTTTGTAACCATGCCTTCCACTTCCATTGCATTAGCCGATGGCTCAAGACTCGTC
rJMSF017D12+          GGGGAGTTTGTAACCATGCCTTCCACTTCCATTGCATTAGCCGATGGCTCAAGACTCGTC
JMSF033H23-           GGGGAGTTTGTAACCATGCCTTCCACTTCCATTGCATTAGCCGATGGCTCAAGACTCGTC
JMSF017D12-           GGGGAGTTTGTAACCATGCCTTCCACTTCCATTGCATTAGCCGATGGCTCAAGACTCGTC
                      ____________________________________________________________
consensus             GGGGAGTTTGTAACCATGCCTTCCACTTCCATTGCATTAGCCGATGGCTCAAGACTCGTC
 
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rJMSF033H23+          AAGTCTGCCCCTTGGACAACAGCGAGTGGGAGTTCCAGAAGTA                 
rJMSF017D12+          AAGTCTGCCCCTTGGACAACAGCGAGTGGGAGTTCCAGAAGTA                 
JMSF033H23-           AAGTCTGCCCCTTGGACAACAGCGAGTGGGAGTTCCAGAAGTA                 
JMSF017D12-           AAGTCTGCCCCTTGGACAACAGCGAGTGGGAGTTCCAGAAGTACGGGCACTAGAAGAATC
                      ____________________________________________________________
consensus             AAGTCTGCCCCTTGGACAACAGCGAGTGGGAGTTCCAGAAGTACGGGCACTAGAAGAATC
 
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JMSF017D12-           ATTTGCCAAATCGGCTGTAAGTGTTTAAGAAGTCTTATGAAGCATTGGCGCAGTTTGTGA
                      ____________________________________________________________
consensus             ATTTGCCAAATCGGCTGTAAGTGTTTAAGAAGTCTTATGAAGCATTGGCGCAGTTTGTGA
 
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JMSF017D12-           TGTGGAATGTGTGTATGGCGACNATGTGAATGTTTTTTTATTGCTAGGCNAGTGAATTCA
                      ____________________________________________________________
consensus             TGTGGAATGTGTGTATGGCGACNATGTGAATGTTTTTTTATTGCTAGGCNAGTGAATTCA