| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014F20 | Sequence | 579 | 007830 (6) | ref|XP_008459143.1| | 6e-38 | PREDICTED: cellulose synthase-like protein D3 [Cucumis melo] | 731 | 012268 (4) | ref|XP_008234563.1| | 1e-74 | PREDICTED: cellulose synthase-like protein D3 [Prunus mume] |
| JMFF035E04 | Sequence | 500 | 007830 (6) | ref|XP_002274896.1| | 7e-20 | PREDICTED: cellulose synthase-like protein D3 [Vitis vinifera] | 702 | 012268 (4) | ref|XP_008234563.1| | 2e-72 | PREDICTED: cellulose synthase-like protein D3 [Prunus mume] |
| JMFS013B12 | Sequence | 650 | 007830 (6) | ref|XP_006347576.1| | 2e-52 | PREDICTED: cellulose synthase-like protein D3-like [Solanum tuberosum] | |||||
| JMSF016A05 | Sequence | 313 | 007830 (6) | ||||||||
| JMSF019M24 | Sequence | 259 | 007830 (6) | ref|XP_011084614.1| | 1e-04 | PREDICTED: cellulose synthase-like protein D3 [Sesamum indicum] | 774 | 012268 (4) | gb|KJB26747.1| | 2e-108 | hypothetical protein B456_004G257300 [Gossypium raimondii] |
| JMSF029M24 | Sequence | 658 | 007830 (6) | ref|XP_006347576.1| | 8e-92 | PREDICTED: cellulose synthase-like protein D3-like [Solanum tuberosum] | 695 | 012268 (4) | ref|XP_008234563.1| | 9e-82 | PREDICTED: cellulose synthase-like protein D3 [Prunus mume] |
This contig is upended
. : . : . : . : . : . :
JMSF029M24+ TCCAAGTCAGTAATCTTATATGACTCCTTACAC
____________________________________________________________
consensus TCCAAGTCAGTAATCTTATATGACTCCTTACAC
. : . : . : . : . : . :
JMSF029M24+ CCAGGACATATTCCATCACCAGTTTTAACAGAATCTAGGTAACAGTCCCTACATATTTTG
____________________________________________________________
consensus CCAGGACATATTCCATCACCAGTTTTAACAGAATCTAGGTAACAGTCCCTACATATTTTG
. : . : . : . : . : . :
JMSF029M24+ AAATCACATTCACAAGGGACGATATCATTTCCCCTTTCATCACTCATCACTTTAGAGTCA
____________________________________________________________
consensus AAATCACATTCACAAGGGACGATATCATTTCCCCTTTCATCACTCATCACTTTAGAGTCA
. : . : . : . : . : . :
JMSF029M24+ CATCCAGGTATGGAACAAGAGGATCCTTTTGCACCAGCCATCTGGGGATGGTTTGCCTCT
JMFS013B12+ ATCCAGGTATGNAACAAGAGGATCCTTNTGCACCAGCCATCTGGGNATGGTTGCCCTCT
____________________________________________________________
consensus CATCCAGGTATGGAACAAGAGGATCCTTTTGCACCAGCCATCTGGGGATGGTTTGCCTCT
. : . : . : . : . : . :
JMSF029M24+ GATTCAATCACCTTATCCATGAGATGAGCTCGAGTAACACTGTTAAATCCTCCTGTAAAA
JMFS013B12+ GATTCAATCACCTTATCCATGAGATGAGCTCGAGTAACACTGTTAAATCCTCCTGTAAAA
JMFF014F20+ CATGAGATGAGCTCGAGTAACACTGTTAAATCCTCCTGTAAAA
____________________________________________________________
consensus GATTCAATCACCTTATCCATGAGATGAGCTCGAGTAACACTGTTAAATCCTCCTGTAAAA
. : . : . : . : . : . :
JMSF029M24+ AGTGAATTTGATACATACTGCTCCTCAACCTTCTGGGAAATGGAATCCATTGGCTGGTTG
JMFS013B12+ AGTGAATTTGATACATACTGCTCCTCAACCTTCTGGGAAATGGAATCCATTGGCTGGTTG
JMFF014F20+ AGTGAATTTGATACATACTGCTCCTCAACCTTCTGGGAAATGGAATCCATTGGCTGGTTG
JMFF035E04+ GAAATGGAATCCATTGGCTGGTTG
____________________________________________________________
consensus AGTGAATTTGATACATACTGCTCCTCAACCTTCTGGGAAATGGAATCCATTGGCTGGTTG
. : . : . : . : . : . :
JMSF029M24+ TCAGGGGTCAGCGGTATATGTACCGTATAGTTTGGAAATTCACCACTTCCAAGTTCACTA
JMFS013B12+ TCAGGGGTCAGCGGTATATGTACCGTATAGTTTGGAAATTCACCACTTCCAAGTTCACTA
JMFF014F20+ TCAGGGGTCAGCGGTATATGTACCGTATAGTTTGGAAATTCACCACTTCCAAGTTCACTA
JMFF035E04+ TCAGGGGTCAGCGGTATATGTACCGTATAGTTTGGAAATTCACCACTTCCAAGTTCACTA
____________________________________________________________
consensus TCAGGGGTCAGCGGTATATGTACCGTATAGTTTGGAAATTCACCACTTCCAAGTTCACTA
. : . : . : . : . : . :
JMSF029M24+ TCAAGATCATCCCTAGAATAGTTTACATATCGCCCAGAGGAGGTCCTCCGATCATAGGTC
JMSF019M24+ CCTAGAATAGTTTACATATCGCCCAGAGGAGGTCCTCCGATCATAGGTC
JMFS013B12+ TCAAGATCATCCCTAGAATAGTTTACATATCGCCCAGAGGAGGTCCTCCGATCATAGGTC
JMFF014F20+ TCAAGATCATCCCTAGAATAGTTTACATATCGCCCAGAGGAGGTCCTCCGATCATAGGTC
JMFF035E04+ TCAAGATCATCCCTAGAATAGTTTACATATCGCCCAGAGGAGGTCCTCCGATCATAGGTC
____________________________________________________________
consensus TCAAGATCATCCCTAGAATAGTTTACATATCGCCCAGAGGAGGTCCTCCGATCATAGGTC
. : . : . : . : . : . :
JMSF029M24+ ACAGCTGTTGGAGGTAGTGGAGGCTTGCCATTTTGTGAATCTTGCACATCTGAGGATATT
JMSF019M24+ ACAGCTGTTGGAGGTAGTGGAGGCTTGCCATTTTGTGAATCTTGCACATCTGAGGATATT
JMFS013B12+ ACAGCTGTTGGAGGTAGTGGAGGCTTGCCATTTTGTGAATCTTGCACATCTGAGGATATT
JMFF014F20+ ACAGCTGTTGGAGGTAGTGGAGGCTTGCCATTTTGTGAATCTTGCACATCTGAGGATATT
JMFF035E04+ ACAGCTGTTGGAGGTAGTGGAGGCTTGCCATTTTGTGAATCTTGCACATCTGAGGATATT
JMSF016A05+ ATCTGAGGATATT
____________________________________________________________
consensus ACAGCTGTTGGAGGTAGTGGAGGCTTGCCATTTTGTGAATCTTGCACATCTGAGGATATT
. : . : . : . : . : . :
JMSF029M24+ GAGAGTGACGATCTACTTTGGTTGAATGATTTTGATGCCATTTCTAAATACTCACAAACA
JMSF019M24+ GAGAGTGACGATCTACTTTGGTTGAATGATTTTGATGCCATTTCTAAATACTCACAAACA
JMFS013B12+ GAGAGTGACGATCTACTTTGGTTGAATGATTTTGATGCCATTTCTAAATACTCACAAACA
JMFF014F20+ GAGAGTGACGATCTACTTTGGTTGAATGATTTTGATGCCATTTCTAAATACTCACAAACA
JMFF035E04+ GAGAGTGACGATCTACTTTGGTTGAATGATTTTGATGCCATTTCTAAATACTCACAAACA
JMSF016A05+ GAGAGTGACGATCTACTTTGGTTGAATGATTTTGATGCCATTTCTAAATACTCACAAACA
____________________________________________________________
consensus GAGAGTGACGATCTACTTTGGTTGAATGATTTTGATGCCATTTCTAAATACTCACAAACA
. : . : . : . : . : . :
JMSF029M24+ AATAACCAGATCCAGTCAATGCTTAGTAGAAGAAGCGCATAACCATGGCTTCAGATTCAA
JMSF019M24+ AATAACCAGATCCAGTCAATGCTTAGTAGAAGAAGCGCATAACCATGGCTTCAGATTCAA
JMFS013B12+ AATAACCAGATCCAGTCAATGCTTAGTAGAAGAAGCGCATAACCATGGCTTCAGATTCAA
JMFF014F20+ AATAACCAGATCCAGTCAATGCTTAGTAGAAGAAGCGCATAACCATGGCTTCAGATTCAA
JMFF035E04+ AATAACCAGATCCAGTCAATGCTTAGTAGAAGAAGCGCATAACCATGGCTTCAGATTCAA
JMSF016A05+ AATAACCAGATCCAGTCAATGCTTAGTAGAAGAAGCGCATAACCATGGCTTCAGATTCAA
____________________________________________________________
consensus AATAACCAGATCCAGTCAATGCTTAGTAGAAGAAGCGCATAACCATGGCTTCAGATTCAA
. : . : . : . : . : . :
JMSF029M24+ TGCATGGATCTCCGTACGATGCT
JMSF019M24+ TGCATGGATCTCCGTACGATGCTCAATC
JMFS013B12+ TGCATGGATCTCCGTACGATGCTCAATCGTTTCTATGCAGTGAATTAAATGCCTCTCTGA
JMFF014F20+ TGCATGGATCTCCGTACGATGCTCAATCGTTTCTATGCAGTGAATTAAATGCCTCTCTGA
JMFF035E04+ TGCATGGATCTCCGTACGATGCTCAATCGTTTCTATGCAGTGAATTAAATGCCTCTCTGA
JMSF016A05+ TGCATGGATCTCCGTACGATGCTCAATCGTTTCTATGCAGTGAATTAAATGCCTCTCTGA
____________________________________________________________
consensus TGCATGGATCTCCGTACGATGCTCAATCGTTTCTATGCAGTGAATTAAATGCCTCTCTGA
. : . : . : . : . : . :
JMFS013B12+ GTTGAAACGAACAAAAAAGTATAATGCTCCACCACTTCTGCAACTCCGATCATCAACTGG
JMFF014F20+ GTTGAAACGAACAAAAAAGTATAATGCTCCACCACTTCTGCAACTCCGATCATCAACTGG
JMFF035E04+ GTTGAAACGAACAAAAAAGTATAATGCTCCACCACTTCTGCAACTCCGATCATCAACTGG
JMSF016A05+ GTTGAAACGAACAAAAAAGTATAATGCTCCACCACTTCTGCAACTCCGATCATCAACTGG
____________________________________________________________
consensus GTTGAAACGAACAAAAAAGTATAATGCTCCACCACTTCTGCAACTCCGATCATCAACTGG
. : . : . : . : . : . :
JMFS013B12+ CGGCGGAATTGGCCGGACCGCCGTCAACAGCCAGCACTCAACTCAAG
JMFF014F20+ CGGCGGAATTGGCCGGACCGCCGTCAACAGCCAGCACTCAACTCAAG
JMFF035E04+ CGGCGGAATTGGCCGGACCGCCGTCAACAGCCAGCACTCAACTCAAG
JMSF016A05+ CGGCGGAATTGGCCGGACCGCCGTCAACAGCCAGCACTCAACTCAAGGCAACCTACGCCC
____________________________________________________________
consensus CGGCGGAATTGGCCGGACCGCCGTCAACAGCCAGCACTCAACTCAAGGCAACCTACGCCC