| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS116F05 | Sequence | 569 | 007822 (4) | ref|XP_009790466.1| | 3e-42 | PREDICTED: armadillo repeat-containing protein 8 isoform X1 [Nicotiana sylvestr | |||||
| JMSF013F23 | Sequence | 455 | 007822 (4) | ref|XP_009790467.1| | 1e-17 | PREDICTED: armadillo repeat-containing protein 8 isoform X2 [Nicotiana sylvestr | 708 | 008486 (4) | ref|XP_006361762.1| | 1e-32 | PREDICTED: armadillo repeat-containing protein 8-like [Solanum tuberosum] |
| JMSF015A22 | Sequence | 461 | 007822 (4) | ref|XP_009790466.1| | 2e-18 | PREDICTED: armadillo repeat-containing protein 8 isoform X1 [Nicotiana sylvestr | 710 | 008486 (4) | ref|XP_006361762.1| | 9e-34 | PREDICTED: armadillo repeat-containing protein 8-like [Solanum tuberosum] |
| JMSF016E16 | Sequence | 516 | 007822 (4) | ref|XP_009790467.1| | 3e-33 | PREDICTED: armadillo repeat-containing protein 8 isoform X2 [Nicotiana sylvestr | 715 | 008486 (4) | ref|XP_006361762.1| | 9e-34 | PREDICTED: armadillo repeat-containing protein 8-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMFS116F05+ CTGATAAATCAACTTGAGTGACCGTGCACCAGCATCCACAACC
____________________________________________________________
consensus CTGATAAATCAACTTGAGTGACCGTGCACCAGCATCCACAACC
. : . : . : . : . : . :
JMSF016E16+ TTGTCGTTGGAATGATAAATTAGGCGGAGAAGGAGGGGAAAAGCTCCGGCCTCGAGAACC
JMFS116F05+ TTGTCGTTGGAATGATAAATTAGGCGGAGAAGGAGGGGAAAAGCTCCGGCCTCGAGAACC
____________________________________________________________
consensus TTGTCGTTGGAATGATAAATTAGGCGGAGAAGGAGGGGAAAAGCTCCGGCCTCGAGAACC
. : . : . : . : . : . :
JMSF016E16+ GCCTTAACTCCCGCATCAAAACCGCAGGAAAAGCTCCCAATCGCAGCAGCGGACTGAATT
JMFS116F05+ GCCTTAACTCCCGCATCAAAACCGCAGGAAAAGCTCCCAATCGCAGCAGCGGACTGAATT
JMSF013F23+ GCAGGAAAAGCTCCCAATCGCAGCAGCGGACTGAATT
JMSF015A22+ GCAGGAAAAGCTCCCAATCGCAGCAGCGGACTGAATT
____________________________________________________________
consensus GCCTTAACTCCCGCATCAAAACCGCAGGAAAAGCTCCCAATCGCAGCAGCGGACTGAATT
. : . : . : . : . : . :
JMSF016E16+ ACGAGCGAATCGTGGATTTCTCCGCCGACCTGAGCGGACGCGACCGAGGAAAGAACCGAA
JMFS116F05+ ACGAGCGAATCGTGGATTTCTCCGCCGACCTGAGCGGACGCGACCGAGGAAAGAACCGAA
JMSF013F23+ ACGAGCGAATCGTGGATTTCTCCGCCGACCTGAGCGGACGCGACCGAGGAAAGAACCGAA
JMSF015A22+ ACGAGCGAATCGTGGATTTCTCCGCCGACCTGAGCGGACGCGACCGAGGAAAGAACCGAA
____________________________________________________________
consensus ACGAGCGAATCGTGGATTTCTCCGCCGACCTGAGCGGACGCGACCGAGGAAAGAACCGAA
. : . : . : . : . : . :
JMSF016E16+ ACTACGGCGGGGACGGCACCGAGCTTGAGGAACGAGAGCTTCTTAGTTCGATTCCCGATT
JMFS116F05+ ACTACGGCGGGGACGGCACCGAGCTTGAGGAACGAGAGCTTCTTAGTTCGATTCCCGATT
JMSF013F23+ ACTACGGCGGGGACGGCACCGAGCTTGAGGAACGAGAGCTTCTTAGTTCGATTCCCGATT
JMSF015A22+ ACTACGGCGGGGACGGCACCGAGCTTGAGGAACGAGAGCTTCTTAGTTCGATTCCCGATT
____________________________________________________________
consensus ACTACGGCGGGGACGGCACCGAGCTTGAGGAACGAGAGCTTCTTAGTTCGATTCCCGATT
. : . : . : . : . : . :
JMSF016E16+ ATCTGGTTCTTAACCTCCCGGAGCGCCTTGAGCTGAATCTCGGGGCTGGTGGAGCTCAGC
JMFS116F05+ ATCTGGTTCTTAACCTCCCGGAGCGCCTTGAGCTGAATCTCGGGGCTGGTGGAGCTCAGC
JMSF013F23+ ATCTGGTTCTTAACCTCCCGGAGCGCCTTGAGCTGAATCTCGGGGCTGGTGGAGCTCAGC
JMSF015A22+ ATCTGGTTCTTAACCTCCCGGAGCGCCTTGAGCTGAATCTCGGGGCTGGTGGAGCTCAGC
____________________________________________________________
consensus ATCTGGTTCTTAACCTCCCGGAGCGCCTTGAGCTGAATCTCGGGGCTGGTGGAGCTCAGC
. : . : . : . : . : . :
JMSF016E16+ CGTCCGATCAGGTCCTCGGTGCGGCTGTAATGATGCGGCGTCGGTGAGGCTGACGTCGGC
JMFS116F05+ CGTCCGATCAGGTCCTCGGTGCGGCTGTAATGATGCGGCGTCGGTGAGGCTGACGTCGGC
JMSF013F23+ CGTCCGATCAGGTCCTCGGTGCGGCTGTAATGATGCGGCGTCGGTGAGGCTGACGTCGGC
JMSF015A22+ CGTCCGATCAGGTCCTCGGTGCGGCTGTAATGATGCGGCGTCGGTGAGGCTGACGTCGGC
____________________________________________________________
consensus CGTCCGATCAGGTCCTCGGTGCGGCTGTAATGATGCGGCGTCGGTGAGGCTGACGTCGGC
. : . : . : . : . : . :
JMSF016E16+ ATGGCGGTCGGGAGCGAATCGAGATGGAGTTCATGCGCCAATGAGAGGAAAAGGGAATCG
JMFS116F05+ ATGGCGGTCGGGAGCGAATCGAGATGGAGTTCATGCGCCAATGAGAGGAAAAGGGAATCG
JMSF013F23+ ATGGCGGTCGGGAGCGAATCGAGATGGAGTTCATGCGCCAATGAGAGGAAAAGGGAATCG
JMSF015A22+ ATGGCGGTCGGGAGCGAATCGAGATGGAGTTCATGCGCCAATGAGAGGAAAAGGGAATCG
____________________________________________________________
consensus ATGGCGGTCGGGAGCGAATCGAGATGGAGTTCATGCGCCAATGAGAGGAAAAGGGAATCG
. : . : . : . : . : . :
JMSF016E16+ GAGGTTTCGATTTGTTGAATTTTTGGAAATTGCGGTTTTGCTTCGAATGGGAGTCACAGG
JMFS116F05+ GAGGTTTCGATTTGTTGAATTTTTGGAAATTGCGGTTTTGCTTCGAATGGGAGTCACAGG
JMSF013F23+ GAGGTTTCGATTTGTTGAATTTTTGGAAATTGCGGTTTTGCTTCGAATGGGAGTCACAGG
JMSF015A22+ GAGGTTTCGATTTGTTGAATTTTTGGAAATTGCGGTTTTGCTTCGAATGGGAGTCACAGG
____________________________________________________________
consensus GAGGTTTCGATTTGTTGAATTTTTGGAAATTGCGGTTTTGCTTCGAATGGGAGTCACAGG
. : . : . : . : . : . :
JMSF016E16+ AGGTGGGCTGAACAGGACGACCCGATTCCAGTTTC
JMFS116F05+ AGGTGGGCTGAACAGGACGACCCGATTCCAGTTTCGTCACCGCTCG
JMSF013F23+ AGGTGGGCTGAACAGGACGACCCGATTCCAGTTTCGTCACCGCTCGCTGCGTCACCT
JMSF015A22+ AGGTGGGCTGAACAGGACGACCCGATTCCAGTTTCGTCACCGCTCGCTGCGTCACCTGCC
____________________________________________________________
consensus AGGTGGGCTGAACAGGACGACCCGATTCCAGTTTCGTCACCGCTCGCTGCGTCACCTGCC