Contig 007821:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS155A09Sequence581007821 (5)ref|XP_006386844.1|4e-72hypothetical protein POPTR_0002s22980g [Populus trichocarpa] gb|ERP64641.1| hypo
JMSF014M15Sequence218007821 (5)167007821 (5)
JMSF023B06Sequence685016773ref|XP_009761200.1|2e-98PREDICTED: acyl-CoA dehydrogenase family member 10 [Nicotiana sylvestris]423007821 (5)emb|CDO98831.1|2e-45unnamed protein product [Coffea canephora]
JMSF051O11Sequence654011841 (7)emb|CDO98831.1|2e-114unnamed protein product [Coffea canephora]754007821 (5)ref|XP_008246109.1|2e-129PREDICTED: acyl-CoA dehydrogenase family member 11-like [Prunus mume]

Alignment

This contig is upended


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rJMSF051O11+                      GATCCAACAGCTCCGATGCATAAGCAGCAATCCATGATTTTAGTAGAT
                      ____________________________________________________________
consensus                         GATCCAACAGCTCCGATGCATAAGCAGCAATCCATGATTTTAGTAGAT
 
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rJMSF051O11+          ATAAACTCCCCAGGTATAAAGATAAAGCGACCACTGACAGTGTTTGGTTTTGATGATGCA
                      ____________________________________________________________
consensus             ATAAACTCCCCAGGTATAAAGATAAAGCGACCACTGACAGTGTTTGGTTTTGATGATGCA
 
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rJMSF051O11+          CCACATGGGCATGCAGAAATAGTGTTTGAGAATGTGTGTGTCTCAGAGAAGAACATTCTT
                      ____________________________________________________________
consensus             CCACATGGGCATGCAGAAATAGTGTTTGAGAATGTGTGTGTCTCAGAGAAGAACATTCTT
 
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rJMSF051O11+          CTTGGAGAGGGGCGTGGGTTTGAGATTGCACAGGGTAGGTTGGGTCCTGGAAGGCTGCAT
                      ____________________________________________________________
consensus             CTTGGAGAGGGGCGTGGGTTTGAGATTGCACAGGGTAGGTTGGGTCCTGGAAGGCTGCAT
 
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rJMSF051O11+          CATTGCATGAGGTTAATAGGTGCAGCTGAACGTGGTATGCGGATGATGGTTCAGAGGGCT
JMFS155A09-                               TGCAGCTGAACGTGGTATGCGGATGATGGTTCAGAGGGCT
                      ____________________________________________________________
consensus             CATTGCATGAGGTTAATAGGTGCAGCTGAACGTGGTATGCGGATGATGGTTCAGAGGGCT
 
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rJMSF051O11+          AGTGAGAGAAGAGCTTTTGGAAAGTTTATTGCTGAGCATGGTTCATTCCGTTCTGATGTT
rJMSF023B06+                                                            TTCTGATGTT
JMFS155A09-           AGTGAGAGAAGAGCTTTTGGAAAGTTTATTGCTGAGCATGGTTCATTCCGTTCTGATGTT
                      ____________________________________________________________
consensus             AGTGAGAGAAGAGCTTTTGGAAAGTTTATTGCTGAGCATGGTTCATTCCGTTCTGATGTT
 
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rJMSF051O11+          GCCAGATGCCGAATAGAAGTGGAGAAAACGAGGTTGCTAGTTCTGGAAGCTGCAGACCAG
rJMSF023B06+          GCCAGATGCCGAATAGAAGTGGAGAAAACGNGATTGCTAGTTCTGGAAGCTGCAGACCAG
JMFS155A09-           GCCAGATGCCGAATAGAAGTGGAGAAAACGAGATTGCTAGTTCTGGAAGCTGCAGACCAG
                      ____________________________________________________________
consensus             GCCAGATGCCGAATAGAAGTGGAGAAAACGAGATTGCTAGTTCTGGAAGCTGCAGACCAG
 
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rJMSF051O11+          CTTGATCGGTTAGGGAACAAAAAGGCTCGTGGTACCATAGCAATGGCAAAGGTAGCAGCT
rJMSF023B06+          CTTGATCGGTTAGGGNACAAAANGGCTCGTGGTACCATAGCAATGGCAAAGGTAGCAGCT
JMFS155A09-           CTTGATCGGTTAGGGAACAAAAAGGCTCGTGGTACCATAGCAATGGCAAAGGTAGCAGCT
                      ____________________________________________________________
consensus             CTTGATCGGTTAGGGAACAAAAAGGCTCGTGGTACCATAGCAATGGCAAAGGTAGCAGCT
 
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rJMSF051O11+          CCAGATATGGCACTGAAAGTAATTGACATGGCAATGCAAGTGCATGGAGCAGCTGGGTTA
rJMSF023B06+          CCAGATATGGCNCTGAAAGTAATTGACATNNCAATGCAAGTGCATGGAGCAGCTNGGTTN
JMFS155A09-           CCAGATATGGCACTGAAAGTAATTGACATGGCAATGCAAGTGCATGGAGCAGCTGGGTTA
                      ____________________________________________________________
consensus             CCAGATATGGCACTGAAAGTAATTGACATGGCAATGCAAGTGCATGGAGCAGCTGGGTTA
 
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rJMSF051O11+          TCAGGGGACACTGTTCTAGCACATCTCTGGGCTACAGCCAGGACGTTGAGAATAGCAGAT
rJMSF023B06+          TCAGGGGACACTGTTNTAGCACATCTCTGGGCTACANCCAGGACGTTGAGAANAGCANAT
JMFS155A09-           TCAGGGGACACTGTTCTAGCACATCTCTGGGCTACAGCCAGGACGTTGAGAATAGCAGAT
                      ____________________________________________________________
consensus             TCAGGGGACACTGTTCTAGCACATCTCTGGGCTACAGCCAGGACGTTGAGAATAGCAGAT
 
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rJMSF051O11+          GGTCCAGATGAAGTGCACTTGGGGACCATTGCAAACTTAGAGTTACGGAGACCCAAACTC
rJMSF023B06+          GGTCCAGATGAAGCGCACTTGGGNACCATCGCAAACTTAGAGTTACGGAGACCCAAACTN
JMFS155A09-           GGTCCAGATGAAGTGCACTTGGGGACCATTGCAAACTTAGAGTTACGGAGACCCAAACTC
rJMSF014M15+                                GGACCATTGCAAACTTAGAGTTACGGAGACCCAAACTC
JMSF014M15-                                 GGACCATTGCAAACTTAGAGTTACGGAGACCCAAACTC
                      ____________________________________________________________
consensus             GGTCCAGATGAAGTGCACTTGGGGACCATTGCAAACTTAGAGTTACGGAGACCCAAACTC
 
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rJMSF051O11+          TGATCATCCTCAATCCTCAATCCTGAAGAAGACACAATCAATAAATAAATAAATAATGTT
rJMSF023B06+          TGATCATCCTCAATCCTCNATCCTGAAGAAGNCACNATCAATAAATAAATAAATAATGTT
JMFS155A09-           TGATCATCCTCAATCCTCAATCCTGAAGAAGACACAATCAATAAATAAATAAATAATGTT
rJMSF014M15+          TGATCATCCTCAATCCTCAATCCTGAAGAAGACACAATCAATAAATAAATAAATAATGTT
JMSF014M15-           TGATCATCCTCAATCCTCAATCCTGAAGAAGACACAATCAATAAATAAATAAATAATGTT
                      ____________________________________________________________
consensus             TGATCATCCTCAATCCTCAATCCTGAAGAAGACACAATCAATAAATAAATAAATAATGTT
 
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rJMSF051O11+          AGTTTCTTTGATTAAGGAAATAAATTTGGATTGCACTTTGTAATT               
rJMSF023B06+          AGTTTCTTTGATTAAGGAAATAAATTTGGATTGC                          
JMFS155A09-           AGTTTCTTTGATTAAGGAAATAAATTTGGATTGCACTTTGTAATTTGGACATATGATCCG
rJMSF014M15+          AGTTTCTTTGATTAAGGAAATAAATTTGGATTGCACTTTGTAATTTGGACATATGATCCG
JMSF014M15-           AGTTTCTTTGATTAAGGAAATAAATTTGGATTGCACTTTGTAATTTGGACATATGATCCG
                      ____________________________________________________________
consensus             AGTTTCTTTGATTAAGGAAATAAATTTGGATTGCACTTTGTAATTTGGACATATGATCCG
 
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JMFS155A09-           GCTGGCGGAGTAATAAGAATTCGAAAAAGAACGA                          
rJMSF014M15+          GC                                                          
JMSF014M15-           GCTGGCGGAGTAATAAGAATTCGAAAAAGAACGAAATGGTAATAGCTTGCAAAAAAAAAA
                      ____________________________________________________________
consensus             GCTGGCGGAGTAATAAGAATTCGAAAAAGAACGAAATGGTAATAGCTTGCAAAAAAAAAA