Contig 007817:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004G07Sequence383007817 (8)382001285 (9)
JMSF007N06Sequence355007817 (8)712001285 (9)
JMSF014F13Sequence527007817 (8)801001285 (9)
JMSF027O02Sequence624007817 (8)792001285 (9)
JMSF032E02Sequence682007817 (8)gb|ACB28471.1|1e-06polyprotein, partial [Ananas comosus]674001285 (9)
JMSF046H11Sequence747007817 (8)gb|ACB28470.1|2e-06polyprotein, partial [Ananas comosus]807001285 (9)
JMSF047L13Sequence655007817 (8)gb|ACB28470.1|1e-06polyprotein, partial [Ananas comosus]730001285 (9)
JMSF047P23Sequence671007817 (8)gb|ACB28470.1|1e-06polyprotein, partial [Ananas comosus]688001285 (9)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF046H11+ TTGAATAGAGGAAGTGGATGAATTTTCA
                      ____________________________________________________________
consensus TTGAATAGAGGAAGTGGATGAATTTTCA
 
. : . : . : . : . : . :
JMSF046H11+ ATTTTGTTCAAAAATTCTTAGTCTGTTTTTAATTTAACTGTTTAAAAAGTTCTTGATGTT
JMSF047P23+ AAGTTCNTGATGTT
JMSF032E02+ AACTGTTTAAAAAGTTCNTGATGTT
                      ____________________________________________________________
consensus ATTTTGTTCAAAAATTCTTAGTCTGTTTTTAATTTAACTGTTTAAAAAGTTCTTGATGTT
 
. : . : . : . : . : . :
JMSF046H11+ TGACCACATAAGGAGAGATGATGAAATCATCTCCGAAGTATTTAACCGCGGATTTGATAG
JMSF047P23+ TGACCACATANGGAGAGATGATGAAATCATCTCCGAAGTATTTAACCGCGGATTTGATAG
JMSF047L13+ ACCACATAAGGAGAGATGATGAAATCATCTCCGAAGTATTTAACCGCGGATTTGATAG
JMSF027O02+ CGAAGTATTTAACCGCGGATTTGATAG
JMSF032E02+ GGACCACATAAGGAGAGATGATGAAATCATCTCCGAAGTATTTAACCGCGGATTTGATAG
                      ____________________________________________________________
consensus TGACCACATAAGGAGAGATGATGAAATCATCTCCGAAGTATTTAACCGCGGATTTGATAG
 
. : . : . : . : . : . :
JMSF046H11+ CCTCATCAATTTCATAGAATCCGTTGTATATGGGTAGTCCATATCTCGGATTTCGAAGTG
JMSF047P23+ CCTCATCAATTTCATAGAATCCGTTGTATATGGGTAGTCCATATCTCGGATTTCGAAGTG
JMSF047L13+ CCTCATCAATTTCATAGAATCCGTTGTATATGGGTAGTCCATATCTCGGATTTCGAAGTG
JMSF027O02+ CCTCATCAATTTCATAGAATCCGTTGTATATGGGTAGTCCATATCTCGGATTTCGAAGTG
JMSF032E02+ CCTCATCAATTTCATAGAATCCGTTGTATATGGGTAGTCCATATCTCGGATTTCGAAGTG
                      ____________________________________________________________
consensus CCTCATCAATTTCATAGAATCCGTTGTATATGGGTAGTCCATATCTCGGATTTCGAAGTG
 
. : . : . : . : . : . :
JMSF046H11+ TTTTAATTTCTTCTAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
JMSF047P23+ TTTTAATTTCTTCTAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
JMSF047L13+ TTTTAATTTCTTCTAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
JMSF027O02+ TTTTAATTTCTTCTAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
JMSF032E02+ TTTTAATTTCTTCTAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
JMSF014F13+ TAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
                      ____________________________________________________________
consensus TTTTAATTTCTTCTAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
 
. : . : . : . : . : . :
JMSF046H11+ GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCC-AAAAAAAGCTCTTTACAACA
JMSF047P23+ GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCC-AAAAAAAGCTCTTTACAACA
JMSF047L13+ GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCC-AAAAAAAGCTCTTTACAACA
JMSF027O02+ GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCC-AAAAAAAGCTCTTTACAACA
JMSF032E02+ GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCC-AAAAAAAGCTCTTTACAACA
JMSF014F13+ GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCCAAAAAAAAGCTCTTTACAACA
                      ____________________________________________________________
consensus GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCC-AAAAAAAGCTCTTTACAACA
 
. : . : . : . : . : . :
JMSF046H11+ TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
JMSF047P23+ TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
JMSF047L13+ TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
JMSF027O02+ TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
JMSF004G07+ GAGTGGGCAAATTCCATAAA
JMSF007N06+ GTGGGCAAATTCCATAAA
JMSF032E02+ TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
JMSF014F13+ TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
                      ____________________________________________________________
consensus TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
 
. : . : . : . : . : . :
JMSF046H11+ TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF047P23+ TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF047L13+ TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF027O02+ TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF004G07+ TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF007N06+ TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF032E02+ TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF014F13+ TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
                      ____________________________________________________________
consensus TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
 
. : . : . : . : . : . :
JMSF046H11+ TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF047P23+ TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF047L13+ TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF027O02+ TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF004G07+ TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF007N06+ TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF032E02+ TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF014F13+ TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
                      ____________________________________________________________
consensus TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
 
. : . : . : . : . : . :
JMSF046H11+ TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF047P23+ TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF047L13+ TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF027O02+ TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF004G07+ TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF007N06+ TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF032E02+ TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF014F13+ TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
                      ____________________________________________________________
consensus TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
 
. : . : . : . : . : . :
JMSF046H11+ TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF047P23+ TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF047L13+ TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF027O02+ TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF004G07+ TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF007N06+ TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF032E02+ TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF014F13+ TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
                      ____________________________________________________________
consensus TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
 
. : . : . : . : . : . :
JMSF046H11+ ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF047P23+ ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF047L13+ ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF027O02+ ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF004G07+ ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF007N06+ ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF032E02+ ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF014F13+ ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
                      ____________________________________________________________
consensus ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
 
. : . : . : . : . : . :
JMSF046H11+ ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTT
JMSF047P23+ ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTT
JMSF047L13+ ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTT
JMSF027O02+ ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTT
JMSF004G07+ ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTT
JMSF007N06+ ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTA
JMSF032E02+ ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTT
JMSF014F13+ ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTCTC
                      ____________________________________________________________
consensus ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTTTC