Contig 007817:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004G07Sequence383007817 (8)382001285 (9)
JMSF007N06Sequence355007817 (8)712001285 (9)
JMSF014F13Sequence527007817 (8)801001285 (9)
JMSF027O02Sequence624007817 (8)792001285 (9)
JMSF032E02Sequence682007817 (8)gb|ACB28471.1|1e-06polyprotein, partial [Ananas comosus]674001285 (9)
JMSF046H11Sequence747007817 (8)gb|ACB28470.1|2e-06polyprotein, partial [Ananas comosus]807001285 (9)
JMSF047L13Sequence655007817 (8)gb|ACB28470.1|1e-06polyprotein, partial [Ananas comosus]730001285 (9)
JMSF047P23Sequence671007817 (8)gb|ACB28470.1|1e-06polyprotein, partial [Ananas comosus]688001285 (9)

Alignment

This contig is upended


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JMSF046H11+                                           TTGAATAGAGGAAGTGGATGAATTTTCA
                      ____________________________________________________________
consensus                                             TTGAATAGAGGAAGTGGATGAATTTTCA
 
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JMSF046H11+           ATTTTGTTCAAAAATTCTTAGTCTGTTTTTAATTTAACTGTTTAAAAAGTTCTTGATGTT
JMSF047P23+                                                         AAGTTCNTGATGTT
JMSF032E02+                                              AACTGTTTAAAAAGTTCNTGATGTT
                      ____________________________________________________________
consensus             ATTTTGTTCAAAAATTCTTAGTCTGTTTTTAATTTAACTGTTTAAAAAGTTCTTGATGTT
 
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JMSF046H11+           TGACCACATAAGGAGAGATGATGAAATCATCTCCGAAGTATTTAACCGCGGATTTGATAG
JMSF047P23+           TGACCACATANGGAGAGATGATGAAATCATCTCCGAAGTATTTAACCGCGGATTTGATAG
JMSF047L13+             ACCACATAAGGAGAGATGATGAAATCATCTCCGAAGTATTTAACCGCGGATTTGATAG
JMSF027O02+                                            CGAAGTATTTAACCGCGGATTTGATAG
JMSF032E02+           GGACCACATAAGGAGAGATGATGAAATCATCTCCGAAGTATTTAACCGCGGATTTGATAG
                      ____________________________________________________________
consensus             TGACCACATAAGGAGAGATGATGAAATCATCTCCGAAGTATTTAACCGCGGATTTGATAG
 
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JMSF046H11+           CCTCATCAATTTCATAGAATCCGTTGTATATGGGTAGTCCATATCTCGGATTTCGAAGTG
JMSF047P23+           CCTCATCAATTTCATAGAATCCGTTGTATATGGGTAGTCCATATCTCGGATTTCGAAGTG
JMSF047L13+           CCTCATCAATTTCATAGAATCCGTTGTATATGGGTAGTCCATATCTCGGATTTCGAAGTG
JMSF027O02+           CCTCATCAATTTCATAGAATCCGTTGTATATGGGTAGTCCATATCTCGGATTTCGAAGTG
JMSF032E02+           CCTCATCAATTTCATAGAATCCGTTGTATATGGGTAGTCCATATCTCGGATTTCGAAGTG
                      ____________________________________________________________
consensus             CCTCATCAATTTCATAGAATCCGTTGTATATGGGTAGTCCATATCTCGGATTTCGAAGTG
 
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JMSF046H11+           TTTTAATTTCTTCTAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
JMSF047P23+           TTTTAATTTCTTCTAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
JMSF047L13+           TTTTAATTTCTTCTAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
JMSF027O02+           TTTTAATTTCTTCTAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
JMSF032E02+           TTTTAATTTCTTCTAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
JMSF014F13+                        TAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
                      ____________________________________________________________
consensus             TTTTAATTTCTTCTAGAAGAGGAATTATTTCTTCCCGTGTGTAGTATACTCCGGCCTTAG
 
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JMSF046H11+           GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCC-AAAAAAAGCTCTTTACAACA
JMSF047P23+           GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCC-AAAAAAAGCTCTTTACAACA
JMSF047L13+           GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCC-AAAAAAAGCTCTTTACAACA
JMSF027O02+           GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCC-AAAAAAAGCTCTTTACAACA
JMSF032E02+           GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCC-AAAAAAAGCTCTTTACAACA
JMSF014F13+           GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCCAAAAAAAAGCTCTTTACAACA
                      ____________________________________________________________
consensus             GACCCGTATACAGAACATAACAAGTGAATGGTTTCCCCC-AAAAAAAGCTCTTTACAACA
 
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JMSF046H11+           TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
JMSF047P23+           TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
JMSF047L13+           TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
JMSF027O02+           TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
JMSF004G07+                                                   GAGTGGGCAAATTCCATAAA
JMSF007N06+                                                     GTGGGCAAATTCCATAAA
JMSF032E02+           TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
JMSF014F13+           TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
                      ____________________________________________________________
consensus             TCATGAATGATTGCTGCTTTTTTAGCTTTTTCGTGGGGAAGAGTGGGCAAATTCCATAAA
 
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JMSF046H11+           TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF047P23+           TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF047L13+           TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF027O02+           TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF004G07+           TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF007N06+           TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF032E02+           TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
JMSF014F13+           TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
                      ____________________________________________________________
consensus             TTGTCGATAATACATTGCTCCTCTTCTGTGAGATTTTCTCTCAGAAAAGTATTGAAATGG
 
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JMSF046H11+           TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF047P23+           TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF047L13+           TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF027O02+           TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF004G07+           TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF007N06+           TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF032E02+           TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
JMSF014F13+           TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
                      ____________________________________________________________
consensus             TCTTTTTCAGAAAATGTCTTTAATTTTGTTTTACCAAACCTGAATGTTTTTGCCATGATT
 
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JMSF046H11+           TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF047P23+           TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF047L13+           TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF027O02+           TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF004G07+           TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF007N06+           TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF032E02+           TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
JMSF014F13+           TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
                      ____________________________________________________________
consensus             TGATGTGTCAAATTTTCGAATTGAGATGTTTGGAATTTTCTGAAGTGGAAGGCTTCCAAG
 
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JMSF046H11+           TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF047P23+           TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF047L13+           TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF027O02+           TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF004G07+           TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF007N06+           TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF032E02+           TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
JMSF014F13+           TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
                      ____________________________________________________________
consensus             TCTGAAGTTTTGAATGAAATTTAAGTCCGAAGACTTTGAATCCCTCCCACCTCGTACGCC
 
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JMSF046H11+           ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF047P23+           ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF047L13+           ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF027O02+           ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF004G07+           ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF007N06+           ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF032E02+           ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
JMSF014F13+           ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
                      ____________________________________________________________
consensus             ACGTTTAATATCATATTCTGTCTAAATTTACTGGAAACAAAGTTAACGTTAAAGTAAGGA
 
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JMSF046H11+           ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTT   
JMSF047P23+           ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTT  
JMSF047L13+           ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTT  
JMSF027O02+           ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTT  
JMSF004G07+           ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTT    
JMSF007N06+           ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTA                          
JMSF032E02+           ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTT  
JMSF014F13+           ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTCTC
                      ____________________________________________________________
consensus             ATTTCTCTTTCAAACCTCAAAGCTTTTTTTTGTAACTCAAACTATGGTTGTGCCTTTTTC