Contig 007810:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013B02Sequence498007810 (2)ref|XP_006358558.1|2e-27PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog 768007184 (3)ref|XP_009771014.1|1e-55PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
JMSF037J04Sequence623007810 (2)ref|XP_006358558.1|3e-52PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog 707007184 (3)ref|XP_009771014.1|5e-44PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

Alignment

This contig is upended


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JMSF037J04+                                                GGACAGCTACCAGCAAATGCTCG
                      ____________________________________________________________
consensus                                                  GGACAGCTACCAGCAAATGCTCG
 
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JMSF037J04+           ACTATTCACACAACAATTTGTTGAGCAGTACATGTAGGTTTCACGAAGATCATATATTTT
                      ____________________________________________________________
consensus             ACTATTCACACAACAATTTGTTGAGCAGTACATGTAGGTTTCACGAAGATCATATATTTT
 
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JMSF037J04+           ATGCTCCCTCAAGGCAATGCGATACCGACCTTTGTGAGGCCTATCAGATGGCAAAAAGTT
JMSF013B02+                                                     ATCAGATGGCAAAAAGTT
                      ____________________________________________________________
consensus             ATGCTCCCTCAAGGCAATGCGATACCGACCTTTGTGAGGCCTATCAGATGGCAAAAAGTT
 
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JMSF037J04+           GCTGCAAAGTGGATAACCGCACATGTTTACTATTGTTCTTTCTGTGACAACATCTTGATA
JMSF013B02+           GCTGCAAAGTGGATAACCGCACATGTTTACTATTGTTCTTTCTGTGACAACATCTTGATA
                      ____________________________________________________________
consensus             GCTGCAAAGTGGATAACCGCACATGTTTACTATTGTTCTTTCTGTGACAACATCTTGATA
 
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JMSF037J04+           ATCACTACGACACATCAAAGACCCAGCAGCAAGGAGTTTATTCTCATCTTGAATGCCATC
JMSF013B02+           ATCACTACGACACATCAAAGACCCAGCAGCAAGGAGTTTATTCTCATCTTGAATGCCATC
                      ____________________________________________________________
consensus             ATCACTACGACACATCAAAGACCCAGCAGCAAGGAGTTTATTCTCATCTTGAATGCCATC
 
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JMSF037J04+           CAGAAGACAAAGTTGCAGCTTGTGGACAGCATCTTTCACAGTGGTTGCTTCTGTCTTAGT
JMSF013B02+           CAGAAGACAAAGTTGCAGCTTGTGGACAGCATCTTTCACAGTGGTTGCTTCTGTCTTAGT
                      ____________________________________________________________
consensus             CAGAAGACAAAGTTGCAGCTTGTGGACAGCATCTTTCACAGTGGTTGCTTCTGTCTTAGT
 
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JMSF037J04+           CATTCTGGAAGGCTTCCTGAAGTTTAAAATCTGGTGGCTGCTGTTGGTTCACGTCGATGG
JMSF013B02+           CATTCTGGAAGGCTTCCTGAAGTTTAAAATCTGGTGGCTGCTGTTGGTTCACGTCGATGG
                      ____________________________________________________________
consensus             CATTCTGGAAGGCTTCCTGAAGTTTAAAATCTGGTGGCTGCTGTTGGTTCACGTCGATGG
 
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JMSF037J04+           ACCTGTTGACGCTGGAGCTCGCAGGGAGAACCGGACGCTGTTGACGCTGCCGGCTGTGAC
JMSF013B02+           ACCTGTTGACGCTGGAGCTCGCAGGGAGAACCGGACGCTGTTGACGCTGCCGGCTGTGAC
                      ____________________________________________________________
consensus             ACCTGTTGACGCTGGAGCTCGCAGGGAGAACCGGACGCTGTTGACGCTGCCGGCTGTGAC
 
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JMSF037J04+           AGGTGCTGACGGTGAGTGGGCTGCCGGCTGTGAAGGGGCTGGTCGTGGTCGGCGATCGCG
JMSF013B02+           AGGTGCTGACGGTGAGTGGGCTGCCGGCTGTGAAGGGGCTGGTCGTGGTCGGCGATCGCG
                      ____________________________________________________________
consensus             AGGTGCTGACGGTGAGTGGGCTGCCGGCTGTGAAGGGGCTGGTCGTGGTCGGCGATCGCG
 
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JMSF037J04+           GCGGCGCCAGTGCTGATCAGGGAAAAGGGACGGTGGTGGGGCTCGGCGGTGGCGTTTGTG
JMSF013B02+           GCGGCGCCAGTGCTGATCAGGGAAAAGGGACGGTGGTGGGGCTCGGCGGTGGCGTTTGTG
                      ____________________________________________________________
consensus             GCGGCGCCAGTGCTGATCAGGGAAAAGGGACGGTGGTGGGGCTCGGCGGTGGCGTTTGTG
 
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JMSF037J04+           GGCAGGCGGTGGCAGATTACGGAAAAGGGAATTAGGGCTGGGGGTTGGGGGCGGAATCCC
JMSF013B02+           GGCAGGCGGTGGCAGATTACGGAAAAGGGAATTAGGGCTGGGGGTTGGGGGCGGAATCCC
                      ____________________________________________________________
consensus             GGCAGGCGGTGGCAGATTACGGAAAAGGGAATTAGGGCTGGGGGTTGGGGGCGGAATCCC