Contig 007809:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN042I07Sequence634007809 (5)ref|XP_004232493.1|1e-40PREDICTED: chaperone protein dnaJ 11, chloroplastic [Solanum lycopersicum]
JMSF001J01Sequence386007809 (5)ref|XP_004232493.1|4e-10PREDICTED: chaperone protein dnaJ 11, chloroplastic [Solanum lycopersicum]724007809 (5)ref|XP_004232493.1|2e-40PREDICTED: chaperone protein dnaJ 11, chloroplastic [Solanum lycopersicum]
JMSF012P13Sequence462007809 (5)ref|XP_004232493.1|3e-25PREDICTED: chaperone protein dnaJ 11, chloroplastic [Solanum lycopersicum]693007809 (5)ref|XP_004232493.1|3e-40PREDICTED: chaperone protein dnaJ 11, chloroplastic [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF001J01-                                                               AATCATG
                      ____________________________________________________________
consensus                                                                  AATCATG
 
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rJMSF001J01-          GTTAAAAATTGAATTATCGTCCAGTAACTGCGGCTATGCTTTTCTGCATATATAACGAAG
rJMSF012P13-                                     CTGCGGCTATGCTTTTCTGCATATATAACGAAG
                      ____________________________________________________________
consensus             GTTAAAAATTGAATTATCGTCCAGTAACTGCGGCTATGCTTTTCTGCATATATAACGAAG
 
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rJMSF001J01-          GGATCTGTTCTAACTTCTAATCTATATTTAGAATAGCTAGGAAAATGAAAATATATCCAG
JMFN042I07+                    CTAACTTCTAATCTATATNTAGAATAGCTAGGAAAATGAAAATATATCCAG
rJMSF012P13-          GGATCTGTTCTAACTTCTAATCTATATTTAGAATAGCTAGGAAAATGAAAATATATCCAG
                      ____________________________________________________________
consensus             GGATCTGTTCTAACTTCTAATCTATATTTAGAATAGCTAGGAAAATGAAAATATATCCAG
 
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rJMSF001J01-          CTACCAGCACTGATCGGTCTCCCAATTCCGGCGAGTGTAGCCGGTGAATCTCGACATTTT
JMFN042I07+           CTACCAGCACTGATCGGTCTCCCAATTCCGGCGAGTGTAGCCGGTGAATCTCGACATTTT
rJMSF012P13-          CTACCAGCACTGATCGGTCTCCCAATTCCGGCGAGTGTAGCCGGTGAATCTCGACATTTT
                      ____________________________________________________________
consensus             CTACCAGCACTGATCGGTCTCCCAATTCCGGCGAGTGTAGCCGGTGAATCTCGACATTTT
 
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rJMSF001J01-          TTCCGGCGCCGAAGAAGTACAAATGCCGGAGTGCTGCACTTTGACACTCCGCCTCCGACG
JMFN042I07+           TTCCGGCGCCGAAGAAGTACAAATGCCGGAGTGCTGCACTTTGACACTCCGCCTCCGACG
rJMSF012P13-          TTCCGGCGCCGAAGAAGTACAAATGCCGGAGTGCTGCACTTTGACACTCCGCCTCCGACG
                      ____________________________________________________________
consensus             TTCCGGCGCCGAAGAAGTACAAATGCCGGAGTGCTGCACTTTGACACTCCGCCTCCGACG
 
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rJMSF001J01-          GAAGAGGCGCCGGTCATAGTCGGCGCGTTTCTCGGGATCCGATAGAGTGGAGTACGCCGT
JMFN042I07+           GAAGAGGCGCCGGTCATAGTCGGCGCGTTTCTCGGGATCCGATAGAGTGGAGTACGCCGT
rJMSF012P13-          GAAGAGGCGCCGGTCATAGTCGGCGCGTTTCTCGGGATCCGATAGAGTGGAGTACGCCGT
JMSF012P13+                             GTCGGCGCGTTTCTCGGGATCCGATAGAGTGGAGTACGCCGT
                      ____________________________________________________________
consensus             GAAGAGGCGCCGGTCATAGTCGGCGCGTTTCTCGGGATCCGATAGAGTGGAGTACGCCGT
 
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rJMSF001J01-          ATGAATTTTCATGAACTCGTTGGCCGACGATTCCTTCTGACCAGTCCCCGCCACGTCGGG
JMFN042I07+           ATGAATTTTCATGAACTCGTTGGCCGACGATTCCTTCTGACCAGTCCCCGCCACGTCGGG
JMSF001J01+                                            CTTCTGACCAGTCCCCGCCACGTCGGG
rJMSF012P13-          ATGAATTTTCATGAACTCGTTGGCCGACGATTCCTTCTGACCAGTCCCCGCCACGTCGGG
JMSF012P13+           ATGAATTTTCATGAACTCGTTGGCCGACGATTCCTTCTGACCAGTCCCCGCCACGTCGGG
                      ____________________________________________________________
consensus             ATGAATTTTCATGAACTCGTTGGCCGACGATTCCTTCTGACCAGTCCCCGCCACGTCGGG
 
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rJMSF001J01-          ATGGCAAGCTCGAGCAAGTCTCCGATACGCCGCCTTGATCTCCTCGCTCGTCGCGCCAAC
JMFN042I07+           ATGGCAAGCTCGAGCAAGTCTCCGATACGCCGCCTTGATCTCCTCGCTCGTCGCGCCAAC
JMSF001J01+           ATGGCAAGCTCGAGCAAGTCTCCGATACGCCGCCTTGATCTCCTCGCTCGTCGCGCCAAC
rJMSF012P13-          ATGGCAAGCTCGAGCAAGTCTCCGATACGCCGCCTTGATCTCCTCGCTCGTCGCGCCAAC
JMSF012P13+           ATGGCAAGCTCGAGCAAGTCTCCGATACGCCGCCTTGATCTCCTCGCTCGTCGCGCCAAC
                      ____________________________________________________________
consensus             ATGGCAAGCTCGAGCAAGTCTCCGATACGCCGCCTTGATCTCCTCGCTCGTCGCGCCAAC
 
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rJMSF001J01-          CGGAATTCCGAGCAAATCGTAAAAGGACGACGTTGGAGAAGGAGAGGTCAACTTCGGAGG
JMFN042I07+           CGGAATTCCGAGCAAATCGTAAAACGACGACGTTGGAGAAGGAGAGGTCAACTTCGGAGG
JMSF001J01+           CGGAATTCCGAGCAAATCGTAAAAGGACGACGTTGGAGAAGGAGAGGTCAACTTCGGAGG
rJMSF012P13-          CGGAATTCCGAGCAAATCGTAAAACGACGACGTTGGAGAAGGAGAGGTCAACTTCGGAGG
JMSF012P13+           CGGAATTCCGAGCAAATCGTAAAACGACGACGTTGGAGAAGGAGAGGTCAACTTCGGAGG
                      ____________________________________________________________
consensus             CGGAATTCCGAGCAAATCGTAAAACGACGACGTTGGAGAAGGAGAGGTCAACTTCGGAGG
 
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rJMSF001J01-          CGACGAAAACGAGGCAGTAGTTGTTTCTGTTTCGAATTCAGCATAGGTAGCAGTGGCGGA
JMFN042I07+           CGACGAAAACGAGGCAGTAGTTGTTTCTGTTTCGAATTCAGCATAGGTAGCAGTGGCGGA
JMSF001J01+           CGACGAAAACGAGGCAGTAGTTGTTTCTGTTTCGAATTCAGCATAGGTAGCAGTGGCGGA
rJMSF012P13-          CGACGAAAACGAGGCAGTAGTTGTTTCTGTTTCGAATTCAGCATAGGTAGCAGTGGCGGA
JMSF012P13+           CGACGAAAACGAGGCAGTAGTTGTTTCTGTTTCGAATTCAGCATAGGTAGCAGTGGCGGA
                      ____________________________________________________________
consensus             CGACGAAAACGAGGCAGTAGTTGTTTCTGTTTCGAATTCAGCATAGGTAGCAGTGGCGGA
 
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rJMSF001J01-          CGCGGCGACGCCTGGAAAACTTGATGGCCGGAATTTGACTGACGACGGTGAAGCAGAGCT
JMFN042I07+           CGCGGCGACGCCTGGAAAACTTGATGGCCGGAATTTGACTGACGACGGTGAAGCAGAGCT
JMSF001J01+           CGCGGCGACGCCTGGAAAACTTGATGGCCGGAATTTGACTGACGACGGTGAAGCAGAGCT
rJMSF012P13-          CGCGGCGACGCCTGGAAAACTTGATGGCCGGAATTTGACTGACGACGGTGAAGCAGAGCT
JMSF012P13+           CGCGGCGACGCCTGGAAAACTTGATGGCCGGAATTTGACTGACGACGGTGAAGCAGAGCT
                      ____________________________________________________________
consensus             CGCGGCGACGCCTGGAAAACTTGATGGCCGGAATTTGACTGACGACGGTGAAGCAGAGCT
 
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rJMSF001J01-          CTCCGACGAG-AAAAAGACGTTTGTGTAGGCGAAGGAANANGAGAATTGTANGGAGCGG-
JMFN042I07+           CTCCGACGAGAAAAAAGACGTTTGTGTAGGCGAAGGAAGAAGAGAATTGTAGGGAGCGGA
JMSF001J01+           CTCCGACGAGAAAAAAGACGTTTGTGTAGGCGAAGGAAGAAGAGAATTGTAGGGAGCGGA
rJMSF012P13-          CTCCGACGAGAAAAAAGACGTTTGTGTAGGCGAAGGAAGAAGAGAATTGTAGGGAGCGGA
JMSF012P13+           CTCCGACGAGAAAAAAGACGTTTGTGTAGGCGAAGGAAGAAGAGAATTGTAGGGAGCGGA
                      ____________________________________________________________
consensus             CTCCGACGAGAAAAAAGACGTTTGTGTAGGCGAAGGAAGAAGAGAATTGTAGGGAGCGGA
 
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rJMSF001J01-          AAATGAAGCCATTGATAAGCTTTGGAATTTAAACCAATCAGAGATGTGTAGTGGGACT  
JMFN042I07+           AAATGAAGCCATTGATAAGCTTTGGAATTTAAACCAATCAGAG                 
JMSF001J01+           AAATGAAGCCATTGATAAGCTTTGGAATTTAAACCAATCAGAGATGTGTAGTGGGACT  
rJMSF012P13-          AAATGAAGCCATTGATAAGCTTTGGAATTTAAACCAATCAGAGATGTGTAGTGGGACT  
JMSF012P13+           AAATGAAGCCATTGATAAGCTTTGGAATTTAAACCAATCAGAGATGTGTAGTGGGACTGC
                      ____________________________________________________________
consensus             AAATGAAGCCATTGATAAGCTTTGGAATTTAAACCAATCAGAGATGTGTAGTGGGACTGC