Contig 007802:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS003E02Sequence537007802 (3)ref|XP_010318683.1|2e-58PREDICTED: chaperone protein ClpD, chloroplastic isoform X2 [Solanum lycopersic
JMSF012D06Sequence438007802 (3)ref|XP_009629147.1|5e-14PREDICTED: U2 small nuclear ribonucleoprotein A' [Nicotiana tomentosiformis]758007802 (3)ref|XP_010318683.1|3e-38PREDICTED: chaperone protein ClpD, chloroplastic isoform X2 [Solanum lycopersic

Alignment

This contig is upended


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rJMSF012D06-                                                                 AATTT
                      ____________________________________________________________
consensus                                                                    AATTT
 
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rJMSF012D06-          CCCTTGCAGGGATAGAGTTTGTGAAGCCATGGAAGTTTTAACAATGAAACTTGAATAATT
                      ____________________________________________________________
consensus             CCCTTGCAGGGATAGAGTTTGTGAAGCCATGGAAGTTTTAACAATGAAACTTGAATAATT
 
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rJMSF012D06-          AAATGCAAAAATTTAGCCCTCCCACCCCCTGAAACCCTGCATTAATGGGGCTAATGTCTG
                      ____________________________________________________________
consensus             AAATGCAAAAATTTAGCCCTCCCACCCCCTGAAACCCTGCATTAATGGGGCTAATGTCTG
 
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JMFS003E02+                               TCAGATGCTGGAGATACTGAATCTGATGCTGCAGGAGGTG
rJMSF012D06-          TCTGTTTTCCATTATATATTTCAGATGCTGGAGATACTGAATCTGATGCTGCAGGAGGTG
                      ____________________________________________________________
consensus             TCTGTTTTCCATTATATATTTCAGATGCTGGAGATACTGAATCTGATGCTGCAGGAGGTG
 
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JMFS003E02+           AAAGGCAGGCTTGTTTCCATGGGAATAGGGTTGGAAGTAACAGGTGCAACTATGGAGCTG
rJMSF012D06-          AAAGGCAGGCTTGTTTCCATGGGAATAGGGTTGGAAGTAACAGGTGCAACTATGGAGCTG
                      ____________________________________________________________
consensus             AAAGGCAGGCTTGTTTCCATGGGAATAGGGTTGGAAGTAACAGGTGCAACTATGGAGCTG
 
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JMFS003E02+           ATATGTGAACAAGGATTTGACAGAAACTACGGCGCCCGACCTCTTAGGAGGGCGCTAACC
rJMSF012D06-          ATATGTGAACAAGGATTTGACAGAAACTACGGCGCCCGACCTCTTAGGAGGGCGCTAACC
                      ____________________________________________________________
consensus             ATATGTGAACAAGGATTTGACAGAAACTACGGCGCCCGACCTCTTAGGAGGGCGCTAACC
 
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JMFS003E02+           AGCATAATTGAAGACCTCTTGAGTGAGTTTATACTTTCTGGAGATTACAACCCTGGTGAT
rJMSF012D06-          AGCATAATTGAAGACCTCTTGAGTGAGTTTATACTTTCTGGAGATTACAACCCTGGTGAT
                      ____________________________________________________________
consensus             AGCATAATTGAAGACCTCTTGAGTGAGTTTATACTTTCTGGAGATTACAACCCTGGTGAT
 
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JMFS003E02+           GTTGCTGTAATTCATTTAGATGATTCCGGGAATCCAATTGTCTCCAACCGATCAAGCCTC
rJMSF012D06-          GTTGCTGTAATTCATTTAGATGATTCCGGGAATCCAATTGTCTCCAACCGATCAAGCCTC
                      ____________________________________________________________
consensus             GTTGCTGTAATTCATTTAGATGATTCCGGGAATCCAATTGTCTCCAACCGATCAAGCCTC
 
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JMFS003E02+           ACCATGTCT                                                   
rJMSF012D06-          ACCATGTCTTAATTTGCGTTACATTCCATAGGATCACCTTTGATGATTAGAAGAGCAATT
JMSF012D06+                                                     ATGATTAGAAGAGCAATT
                      ____________________________________________________________
consensus             ACCATGTCTTAATTTGCGTTACATTCCATAGGATCACCTTTGATGATTAGAAGAGCAATT
 
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rJMSF012D06-          AATTGATCAAACTCTCCTTTGTCACCCATTAGTGTCTCACATGGATCTTAGCAATACACT
JMSF012D06+           AATTGATCAAACTCTCCTTTGTCACCCATTAGTGTCTCACATGGATCTTAGCAATACACT
                      ____________________________________________________________
consensus             AATTGATCAAACTCTCCTTTGTCACCCATTAGTGTCTCACATGGATCTTAGCAATACACT
 
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rJMSF012D06-          AGACAAAACAGCTTCTCATCACATGCTGGTCAGATATATAGCATTATAGCCTATTCCTGT
JMSF012D06+           AGACAAAACAGCTTCTCATCACATGCTGGTCAGATATATAGCATTATAGCCTATTCCTGT
                      ____________________________________________________________
consensus             AGACAAAACAGCTTCTCATCACATGCTGGTCAGATATATAGCATTATAGCCTATTCCTGT
 
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rJMSF012D06-          TCCATTGCTGTAGGTCCATCATCCTTCTGTACAGCAACACTATTTCCTTGCTCATTACTT
JMSF012D06+           TCCATTGCTGTAGGTCCATCATCCTTCTGTACAGCAACACTATTTCCTTGCTCATTACTT
                      ____________________________________________________________
consensus             TCCATTGCTGTAGGTCCATCATCCTTCTGTACAGCAACACTATTTCCTTGCTCATTACTT
 
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rJMSF012D06-          GCTTCATTCTCACCATCAGTAACCATTTTGTCTTCTTTAGCATCATCTTTCTTGGAACTG
JMSF012D06+           GCTTCATTCTCACCATCAGTAACCATTTTGTCTTCTTTAGCATCATCTTTCTTGGAACTG
                      ____________________________________________________________
consensus             GCTTCATTCTCACCATCAGTAACCATTTTGTCTTCTTTAGCATCATCTTTCTTGGAACTG
 
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rJMSF012D06-          GCATCGCCNTCACTGATAATCANATCTGCCGGA                           
JMSF012D06+           GCATCGCCATCACTGATAATCAGATCTGCCGGAAGTTGGCCAGACTTTAAAGCATTTTCT
                      ____________________________________________________________
consensus             GCATCGCCATCACTGATAATCAGATCTGCCGGAAGTTGGCCAGACTTTAAAGCATTTTCT
 
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JMSF012D06+           AGCATTGCCACCTCTTCAAGAGTTTGGGAATTGACAATGGCAGCCTGCAGAAAAACGTAT
                      ____________________________________________________________
consensus             AGCATTGCCACCTCTTCAAGAGTTTGGGAATTGACAATGGCAGCCTGCAGAAAAACGTAT
 
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JMSF012D06+           TCGTTAAACTAATAGAAATGTCATGTCTAAGAAAAAAATGTGAAGGGGATGGATCTAGCC
                      ____________________________________________________________
consensus             TCGTTAAACTAATAGAAATGTCATGTCTAAGAAAAAAATGTGAAGGGGATGGATCTAGCC