Contig 007798:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050E05Sequence637007798 (5)607006999 (4)
JMSF006A06Sequence256007798 (5)345013881 (6)ref|XP_009779743.1|1e-33PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Nicotiana sylvestris]
JMSF011P21Sequence273007798 (5)709006999 (4)ref|XP_002325473.1|2e-43phosphatase 2C family protein [Populus trichocarpa] gb|ABK95223.1| unknown [Popu
JMSF030M17Sequence629007798 (5)664006999 (4)ref|XP_010111089.1|4e-18putative protein phosphatase 2C 33 [Morus notabilis] gb|EXC29951.1| putative pro
JMSF042D09Sequence730007798 (5)741006999 (4)ref|XP_002325473.1|9e-34phosphatase 2C family protein [Populus trichocarpa] gb|ABK95223.1| unknown [Popu

Alignment

This contig is upended


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JMSF042D09+                                           TTCAAAATCAACTCTCCCAACCCTCCAC
                      ____________________________________________________________
consensus                                             TTCAAAATCAACTCTCCCAACCCTCCAC
 
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JMFF050E05+                                                                   AATT
JMSF042D09+           NTGATCCAAACAATTCACCAGATCCAGTGCCAAATTTCAATACAAAAAAGGACTCTAATT
                      ____________________________________________________________
consensus             NTGATCCAAACAATTCACCAGATCCAGTGCCAAATTTCAATACAAAAAAGGACTCTAATT
 
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JMFF050E05+           CCTTGCAGCCTCAATAAAGTAATGAGCTTTTCAATGGCAGACAACTATATATGTTAATCA
JMSF042D09+           CCTTGCAGCCTCAATAAAGTAATGAGCTTTTCAATGGCAGACAACTATATATGTTAATCA
JMSF030M17+                                        TTCAATGGCAGACANCTATATATGTTAATCA
                      ____________________________________________________________
consensus             CCTTGCAGCCTCAATAAAGTAATGAGCTTTTCAATGGCAGACAACTATATATGTTAATCA
 
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JMFF050E05+           CTAAATGATCCTTATAAAAGATTAACACGAATTCAATAATAATAATATAATCTAATAATA
JMSF042D09+           CTAAATGATCCTTATAAAAGATTAACACGAATTCAATAATAATAATATAATCTAATAATA
JMSF030M17+           CTAAATGATCCTTATAAAAGANTAACACGAATTCAATAATAATAATATAATCTAATAATA
                      ____________________________________________________________
consensus             CTAAATGATCCTTATAAAAGATTAACACGAATTCAATAATAATAATATAATCTAATAATA
 
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JMFF050E05+           ACAAACTACCTTTTCTTTCCTTTTTCTGCACTTTACCAGAATTATTACAGATATTGGAGC
JMSF042D09+           ACAAACTACCTTTTCTTTCCTTTTTCTGCACTTTACCAGAATTATTACAGATATTGGAGC
JMSF030M17+           ACAAACTACCTTTTCTTTCCTTTTTCTGCACTTTACCAGAATTATTACAGATATTGGAGC
                      ____________________________________________________________
consensus             ACAAACTACCTTTTCTTTCCTTTTTCTGCACTTTACCAGAATTATTACAGATATTGGAGC
 
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JMFF050E05+           AAGCATAAAGAACAGATCTTTCTAAGCAGAGCCCTTTATAAATTCATTTAATATGAACAA
JMSF042D09+           AAGCATAAAGAACAGATCTTTCTAAGCAGAGCCCTTTATAAATTCATTTAATATGAACAA
JMSF030M17+           ANGCATAAAGAACAGATCTTTCTAAGCAGAGCCCNTTATAAATTCATTTAATATGAACAA
                      ____________________________________________________________
consensus             AAGCATAAAGAACAGATCTTTCTAAGCAGAGCCCTTTATAAATTCATTTAATATGAACAA
 
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JMFF050E05+           TCCAATAAGTACCTTTCTCTCTCTCTCCTCCCTCTCGCAATCCACTCTATCACTGCTTGC
JMSF042D09+           TCCAATAAGTACCTTTCTCTCTCTCTCCTCCCTCTCGCAATCCACTCTATCACTGCTTGC
JMSF030M17+           TCCAATAAGTACCTTTCTCTCTCTCTCCTCCCTCTCGCAATCCACTCTATCACTGCTTGC
                      ____________________________________________________________
consensus             TCCAATAAGTACCTTTCTCTCTCTCTCCTCCCTCTCGCAATCCACTCTATCACTGCTTGC
 
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JMFF050E05+           AAAACCAATAATTCGGGAAGATCGCCTGAAATGCTCAAAATCCCGAATCCCCCACTTCCA
JMSF042D09+           AAAACCAATAATTCGGGAAGATCGCCNGAAATGCTCAAAATCCCGAATCCCCCACTTCCA
JMSF030M17+           AAAACCAATAATTCGGGAAGATCGCCTGAAATGCTCAAAATCCCGAATCCCCCACTTCCA
                      ____________________________________________________________
consensus             AAAACCAATAATTCGGGAAGATCGCCTGAAATGCTCAAAATCCCGAATCCCCCACTTCCA
 
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JMFF050E05+           TTTCTGCTGAAACAAGCTAAGATTCCCAATCAATACAGGTCTGGAAGAGTGCCATTCCTC
JMSF006A06+                                        TCAATACAGGTCTGGAAGAGTGCCANTCCTC
JMSF042D09+           TTTCTGCTGAAACAAGCTAAGATTCCCANTCAATACAGGTCTGGAAGAGTGCCATTCCTC
JMSF030M17+           TTTCTGCTGAAACAAGCTAAGATTCCCAATCAATACAGGTCTGGAAGAGTGCCATTCCTC
JMSF011P21+                                        TCAATACAGGTCTGGAAGAGTGCCANTCCTC
                      ____________________________________________________________
consensus             TTTCTGCTGAAACAAGCTAAGATTCCCAATCAATACAGGTCTGGAAGAGTGCCATTCCTC
 
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JMFF050E05+           AAATCAAATCAAAATTAATGCACAGACAAGCTCAGAGTTCCACGATAATTGGTCAAATAT
JMSF006A06+           AAATCAAATCAAAATTAATGCACAGACAAGCTCAGAGTTCCACGATAATTGGTCAAATAT
JMSF042D09+           AAATCAAATCAAAATTAATGCACAGACAAGCTCAGAGTTCCACGATAATTGGTCAAATAT
JMSF030M17+           AAATCAAATCAAAATTAATGCACAGACANGCTCAGAGTTCCACGATAATTGGTCAAATAT
JMSF011P21+           AAATCAAATCAAAATTAATGCACAGACAAGCTCAGAGTTCCACGATAATTGGTCAAATAT
                      ____________________________________________________________
consensus             AAATCAAATCAAAATTAATGCACAGACAAGCTCAGAGTTCCACGATAATTGGTCAAATAT
 
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JMFF050E05+           AGAAATATATTAAAAGAAATCGCTAAAAAGAGTAGGAATAGCAATGAACAACGCAGAGTC
JMSF006A06+           AGAAATATATTAAAAGAAATCGCTAAAAAGAGTNGGAATAGCAATGAACAACGCAGAGTC
JMSF042D09+           AGAAATATATTAAAAGAAATCGCTAAAAAGAGTNGGAATAGCAATGAACAACGCAGAGTC
JMSF030M17+           AGAAATATATTAAAAGAAATCGCTAAAAAGAGTNGGAATAGCAATGAACAACGCAGAGTC
JMSF011P21+           AGAAATATATTAAAAGAAATCGCTAAAAAGAGTNGGAATAGCAATGAACAACGCAGAGTC
                      ____________________________________________________________
consensus             AGAAATATATTAAAAGAAATCGCTAAAAAGAGTAGGAATAGCAATGAACAACGCAGAGTC
 
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JMFF050E05+           GGAGAGAGATATGAGGAGAGAATTGAGATCGCAAAAAAGCCGCCGATGAGAATTCTTCAA
JMSF006A06+           GGAGAGAGATATGAGGAGAGAATTGAGATCGCAAAAAAGCCGCCGATGAGAATTCTTCAA
JMSF042D09+           GGAGAGAGATATGAGGAGAGAATTGAGATCGCAAAAAAGCCGCCGATGAGAATTCTTCAA
JMSF030M17+           GGAGAGAGATATGAGGAGAGAATTGAGATCGCAAAAAAGCCGCCGATGAGAATTCTTCAA
JMSF011P21+           GGAGAGAGATATGAGGAGAGAATTGAGATCGCAAAAAAGCCGCCGATGAGAATTCTTCAA
                      ____________________________________________________________
consensus             GGAGAGAGATATGAGGAGAGAATTGAGATCGCAAAAAAGCCGCCGATGAGAATTCTTCAA
 
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JMFF050E05+           TTTTAGAGAGAGAGAGAGAGAGAGAGAGA                               
JMSF006A06+           TTTTAGAGAGAGAGAGAGAGAGAGAGAGAGATTATTTATCT                   
JMSF042D09+           TTTTAGAGAGAGAGAGAGAGAGAGAGAGAGATTATTTATCT                   
JMSF030M17+           TTTTAGAGAGAGAGAGAGAGAGAGAGAGAGATTATTTATCTGGCTGTCAGGCCGTCT   
JMSF011P21+           TTTTAGAGAGAGAGAGAGAGAGAGAGAGAGATTATTTATCTGGCTGTCAGGCCGTCTGCC
                      ____________________________________________________________
consensus             TTTTAGAGAGAGAGAGAGAGAGAGAGAGAGATTATTTATCTGGCTGTCAGGCCGTCTGCC