Contig 007794:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011H04Sequence106007794 (10)723001385 (12)dbj|BAH58100.1|9e-69Dof zinc finger protein [Ipomoea batatas]
JMSF015C04Sequence168007794 (10)753001385 (12)dbj|BAH58100.1|5e-65Dof zinc finger protein [Ipomoea batatas]
JMSF017M19Sequence120007794 (10)699001385 (12)dbj|BAH58100.1|1e-65Dof zinc finger protein [Ipomoea batatas]
JMSF019G01Sequence247007794 (10)dbj|BAD18093.1|4e-37dof zing finger protein [Ipomoea batatas]666001385 (12)dbj|BAH58100.1|1e-58Dof zinc finger protein [Ipomoea batatas]
JMSF019H01Sequence249007794 (10)dbj|BAD18093.1|1e-37dof zing finger protein [Ipomoea batatas]659001385 (12)dbj|BAH58100.1|2e-57Dof zinc finger protein [Ipomoea batatas]
JMSF019N11Sequence123007794 (10)755001385 (12)dbj|BAH58100.1|1e-66Dof zinc finger protein [Ipomoea batatas]
JMSF019P08Sequence119007794 (10)706001385 (12)dbj|BAH58100.1|8e-67Dof zinc finger protein [Ipomoea batatas]
JMSF034N24Sequence468007794 (10)dbj|BAD18093.1|3e-22dof zing finger protein [Ipomoea batatas]595001385 (12)dbj|BAH58100.1|2e-43Dof zinc finger protein [Ipomoea batatas]
JMSF046E05Sequence136007794 (10)681001385 (12)dbj|BAH58100.1|4e-58Dof zinc finger protein [Ipomoea batatas]
JMSF048D11Sequence402007794 (10)dbj|BAD18093.1|8e-20dof zing finger protein [Ipomoea batatas]750001385 (12)dbj|BAH58100.1|5e-65Dof zinc finger protein [Ipomoea batatas]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF019H01+ ATCAG
JMSF019G01+ CAG
                      ____________________________________________________________
consensus ATCAG
 
. : . : . : . : . : . :
JMSF019H01+ GTTTCTTCAGAGTTTTCTGCTCTGAATTGTTTGTTTCGGTTTGATCACTTTCAGTCTTGG
JMSF019G01+ GTTTCTTCAGAGTTTTCTGCTCTGAATTGTTTGTTTCGGTTTGATCACTTTCAGTCTTGG
                      ____________________________________________________________
consensus GTTTCTTCAGAGTTTTCTGCTCTGAATTGTTTGTTTCGGTTTGATCACTTTCAGTCTTGG
 
. : . : . : . : . : . :
JMSF019H01+ AAAGTTTTGGCGAAGGAGAGTCTTCATCAACAGGGGGAGTTTTGACACTGTTGTCTGATT
JMSF019G01+ AAAGTTTTGGCGAAGGAGAGTCTTCATCAACAGGGGGAGTTTTGACACTGTTGTCTGATT
                      ____________________________________________________________
consensus AAAGTTTTGGCGAAGGAGAGTCTTCATCAACAGGGGGAGTTTTGACACTGTTGTCTGATT
 
. : . : . : . : . : . :
JMSF019H01+ CTGACTCATTCTTAGTACTCTCTAACTCATCCATGTCCTGATCTTGATCTTTCTCTTCAG
JMSF019G01+ CTGACTCATTCTTAGTACTCTCTAACTCATCCATGTCCTGATCTTGATCTTTCTCTTCAG
JMSF048D11+ TTCAG
JMSF034N24+ TTAGTACTCTCTAACTCATCCATGTCCTGATCTTGATCTTTCTCTTCAG
                      ____________________________________________________________
consensus CTGACTCATTCTTAGTACTCTCTAACTCATCCATGTCCTGATCTTGATCTTTCTCTTCAG
 
. : . : . : . : . : . :
JMSF019H01+ AAAACTCATCTGATAAAAGTTCCTTATCATCATCCTCTCGCTTTTGTGTATCAAATTCGT
JMSF019G01+ AAAACTCATCTGATAAAAGTTCCTTATCATCATCCTCTCGCTTTTGTGTATCAAATTCGT
JMSF048D11+ AAAACTCATNTGATAAAAGTTCCTTATCATCATCCTCTCGCTTTTGGGTATCAAATTNGT
JMSF034N24+ AAAACTCATNTGATAAAAGTTCCTTATCATCATCCTCTCGCTTTTGNGTATCAAATTNGT
                      ____________________________________________________________
consensus AAAACTCATCTGATAAAAGTTCCTTATCATCATCCTCTCGCTTTTGTGTATCAAATTCGT
 
. : . : . : . : . : . :
JMSF019H01+ CAA
JMSF019G01+ CAA
JMSF048D11+ CAACATCAGNTCCTCCCTTCCCAGAGCTACCGTNGAGTTTGNTGTCATCCGAACAGCGAT
JMSF034N24+ CAACATCAGCTCCTCCCTTCCCAGAGCTACCGTTGAGTTTGCTGTCATCCGAACAGCGAT
                      ____________________________________________________________
consensus CAACATCAGCTCCTCCCTTCCCAGAGCTACCGTTGAGTTTGCTGTCATCCGAACAGCGAT
 
. : . : . : . : . : . :
JMSF048D11+ CGCGCTTGGAGCCNCCGTCGTTTTCACANGACTCAGNGTATTTTCCGGNGGNGGCGAGCN
JMSF034N24+ CGCGCTNGGAGCCNCNGTCGTTTTCACATGACTCAGNGTATTNTCCGGNGGCGGCGAGCA
                      ____________________________________________________________
consensus CGCGCTTGGAGCCNCCGTCGTTTTCACATGACTCAGNGTATTTTCCGGNGGCGGCGAGCA
 
. : . : . : . : . : . :
JMSF048D11+ CCNCCCTGCCGTACTCCGGCAAGGCAATTTTCTTGCCGAACAGCTTGATNTCCGAGTCCT
JMSF034N24+ CCNCCCTGCCGTANTCCGGCAAGGCAATTTTCTTGCCGAACAGCTTGATNTCCGAGTCCT
                      ____________________________________________________________
consensus CCNCCCTGCCGTACTCCGGCAAGGCAATTTTCTTGCCGAACAGCTTGATNTCCGAGTCCT
 
. : . : . : . : . : . :
JMSF048D11+ TCACTTNTNTCATTTTTCTCGGTACAAAAAAAATGAAGTGGTTTAGCCNCGCTCCGTCGT
JMSF034N24+ TCACTTCTNTCATTTTTCTCGGTACAAAAAAAATGAAGTGGTTTAGCCNCGCTCCGTCGT
JMSF015C04+ CATTTTTCTCGGTACAAAAAAAATGAAGNGGNTTAGCCCCGCTCCGTNGT
JMSF017M19+ GT
                      ____________________________________________________________
consensus TCACTTCTNTCATTTTTCTCGGTACAAAAAAAATGAAGTGGTTTAGCCCCGCTCCGTCGT
 
. : . : . : . : . : . :
JMSF048D11+ GGGCGGCGGCGAGTGGGTTTGGGAAACGT--AAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF034N24+ GGGCGGCGGCGAGTGGGTTTGGGAAACGT--AAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF015C04+ GGGCGGCGGCGAGTGGGTTTGGGAAACGT-AAAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF019P08+ AAAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF019N11+ AAAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF046E05+ AAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF017M19+ GGGNGGCGGNGAGTGGGTTTGGGAAACGT-AAAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF011H04+ GGGTTTGGGAAACGTAAAAAAAAAAAAGAAAGAAAATAGCTAAGGG
                      ____________________________________________________________
consensus GGGCGGCGGCGAGTGGGTTTGGGAAACGT-AAAAAAAAAAAGAAAGAAAATAGCTAAGGG
 
. : . : . : . : . : . :
JMSF048D11+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCT
JMSF034N24+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGC
JMSF015C04+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGC
JMSF019P08+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGCTC
JMSF019N11+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGCTC
JMSF046E05+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGC
JMSF017M19+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGCTC
JMSF011H04+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTNGGCTATGCTCC
                      ____________________________________________________________
consensus GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGCTCC