| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF011H04 | Sequence | 106 | 007794 (10) | 723 | 001385 (12) | dbj|BAH58100.1| | 9e-69 | Dof zinc finger protein [Ipomoea batatas] | |||
| JMSF015C04 | Sequence | 168 | 007794 (10) | 753 | 001385 (12) | dbj|BAH58100.1| | 5e-65 | Dof zinc finger protein [Ipomoea batatas] | |||
| JMSF017M19 | Sequence | 120 | 007794 (10) | 699 | 001385 (12) | dbj|BAH58100.1| | 1e-65 | Dof zinc finger protein [Ipomoea batatas] | |||
| JMSF019G01 | Sequence | 247 | 007794 (10) | dbj|BAD18093.1| | 4e-37 | dof zing finger protein [Ipomoea batatas] | 666 | 001385 (12) | dbj|BAH58100.1| | 1e-58 | Dof zinc finger protein [Ipomoea batatas] |
| JMSF019H01 | Sequence | 249 | 007794 (10) | dbj|BAD18093.1| | 1e-37 | dof zing finger protein [Ipomoea batatas] | 659 | 001385 (12) | dbj|BAH58100.1| | 2e-57 | Dof zinc finger protein [Ipomoea batatas] |
| JMSF019N11 | Sequence | 123 | 007794 (10) | 755 | 001385 (12) | dbj|BAH58100.1| | 1e-66 | Dof zinc finger protein [Ipomoea batatas] | |||
| JMSF019P08 | Sequence | 119 | 007794 (10) | 706 | 001385 (12) | dbj|BAH58100.1| | 8e-67 | Dof zinc finger protein [Ipomoea batatas] | |||
| JMSF034N24 | Sequence | 468 | 007794 (10) | dbj|BAD18093.1| | 3e-22 | dof zing finger protein [Ipomoea batatas] | 595 | 001385 (12) | dbj|BAH58100.1| | 2e-43 | Dof zinc finger protein [Ipomoea batatas] |
| JMSF046E05 | Sequence | 136 | 007794 (10) | 681 | 001385 (12) | dbj|BAH58100.1| | 4e-58 | Dof zinc finger protein [Ipomoea batatas] | |||
| JMSF048D11 | Sequence | 402 | 007794 (10) | dbj|BAD18093.1| | 8e-20 | dof zing finger protein [Ipomoea batatas] | 750 | 001385 (12) | dbj|BAH58100.1| | 5e-65 | Dof zinc finger protein [Ipomoea batatas] |
This contig is upended
. : . : . : . : . : . :
JMSF019H01+ ATCAG
JMSF019G01+ CAG
____________________________________________________________
consensus ATCAG
. : . : . : . : . : . :
JMSF019H01+ GTTTCTTCAGAGTTTTCTGCTCTGAATTGTTTGTTTCGGTTTGATCACTTTCAGTCTTGG
JMSF019G01+ GTTTCTTCAGAGTTTTCTGCTCTGAATTGTTTGTTTCGGTTTGATCACTTTCAGTCTTGG
____________________________________________________________
consensus GTTTCTTCAGAGTTTTCTGCTCTGAATTGTTTGTTTCGGTTTGATCACTTTCAGTCTTGG
. : . : . : . : . : . :
JMSF019H01+ AAAGTTTTGGCGAAGGAGAGTCTTCATCAACAGGGGGAGTTTTGACACTGTTGTCTGATT
JMSF019G01+ AAAGTTTTGGCGAAGGAGAGTCTTCATCAACAGGGGGAGTTTTGACACTGTTGTCTGATT
____________________________________________________________
consensus AAAGTTTTGGCGAAGGAGAGTCTTCATCAACAGGGGGAGTTTTGACACTGTTGTCTGATT
. : . : . : . : . : . :
JMSF019H01+ CTGACTCATTCTTAGTACTCTCTAACTCATCCATGTCCTGATCTTGATCTTTCTCTTCAG
JMSF019G01+ CTGACTCATTCTTAGTACTCTCTAACTCATCCATGTCCTGATCTTGATCTTTCTCTTCAG
JMSF048D11+ TTCAG
JMSF034N24+ TTAGTACTCTCTAACTCATCCATGTCCTGATCTTGATCTTTCTCTTCAG
____________________________________________________________
consensus CTGACTCATTCTTAGTACTCTCTAACTCATCCATGTCCTGATCTTGATCTTTCTCTTCAG
. : . : . : . : . : . :
JMSF019H01+ AAAACTCATCTGATAAAAGTTCCTTATCATCATCCTCTCGCTTTTGTGTATCAAATTCGT
JMSF019G01+ AAAACTCATCTGATAAAAGTTCCTTATCATCATCCTCTCGCTTTTGTGTATCAAATTCGT
JMSF048D11+ AAAACTCATNTGATAAAAGTTCCTTATCATCATCCTCTCGCTTTTGGGTATCAAATTNGT
JMSF034N24+ AAAACTCATNTGATAAAAGTTCCTTATCATCATCCTCTCGCTTTTGNGTATCAAATTNGT
____________________________________________________________
consensus AAAACTCATCTGATAAAAGTTCCTTATCATCATCCTCTCGCTTTTGTGTATCAAATTCGT
. : . : . : . : . : . :
JMSF019H01+ CAA
JMSF019G01+ CAA
JMSF048D11+ CAACATCAGNTCCTCCCTTCCCAGAGCTACCGTNGAGTTTGNTGTCATCCGAACAGCGAT
JMSF034N24+ CAACATCAGCTCCTCCCTTCCCAGAGCTACCGTTGAGTTTGCTGTCATCCGAACAGCGAT
____________________________________________________________
consensus CAACATCAGCTCCTCCCTTCCCAGAGCTACCGTTGAGTTTGCTGTCATCCGAACAGCGAT
. : . : . : . : . : . :
JMSF048D11+ CGCGCTTGGAGCCNCCGTCGTTTTCACANGACTCAGNGTATTTTCCGGNGGNGGCGAGCN
JMSF034N24+ CGCGCTNGGAGCCNCNGTCGTTTTCACATGACTCAGNGTATTNTCCGGNGGCGGCGAGCA
____________________________________________________________
consensus CGCGCTTGGAGCCNCCGTCGTTTTCACATGACTCAGNGTATTTTCCGGNGGCGGCGAGCA
. : . : . : . : . : . :
JMSF048D11+ CCNCCCTGCCGTACTCCGGCAAGGCAATTTTCTTGCCGAACAGCTTGATNTCCGAGTCCT
JMSF034N24+ CCNCCCTGCCGTANTCCGGCAAGGCAATTTTCTTGCCGAACAGCTTGATNTCCGAGTCCT
____________________________________________________________
consensus CCNCCCTGCCGTACTCCGGCAAGGCAATTTTCTTGCCGAACAGCTTGATNTCCGAGTCCT
. : . : . : . : . : . :
JMSF048D11+ TCACTTNTNTCATTTTTCTCGGTACAAAAAAAATGAAGTGGTTTAGCCNCGCTCCGTCGT
JMSF034N24+ TCACTTCTNTCATTTTTCTCGGTACAAAAAAAATGAAGTGGTTTAGCCNCGCTCCGTCGT
JMSF015C04+ CATTTTTCTCGGTACAAAAAAAATGAAGNGGNTTAGCCCCGCTCCGTNGT
JMSF017M19+ GT
____________________________________________________________
consensus TCACTTCTNTCATTTTTCTCGGTACAAAAAAAATGAAGTGGTTTAGCCCCGCTCCGTCGT
. : . : . : . : . : . :
JMSF048D11+ GGGCGGCGGCGAGTGGGTTTGGGAAACGT--AAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF034N24+ GGGCGGCGGCGAGTGGGTTTGGGAAACGT--AAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF015C04+ GGGCGGCGGCGAGTGGGTTTGGGAAACGT-AAAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF019P08+ AAAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF019N11+ AAAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF046E05+ AAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF017M19+ GGGNGGCGGNGAGTGGGTTTGGGAAACGT-AAAAAAAAAAAGAAAGAAAATAGCTAAGGG
JMSF011H04+ GGGTTTGGGAAACGTAAAAAAAAAAAAGAAAGAAAATAGCTAAGGG
____________________________________________________________
consensus GGGCGGCGGCGAGTGGGTTTGGGAAACGT-AAAAAAAAAAAGAAAGAAAATAGCTAAGGG
. : . : . : . : . : . :
JMSF048D11+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCT
JMSF034N24+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGC
JMSF015C04+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGC
JMSF019P08+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGCTC
JMSF019N11+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGCTC
JMSF046E05+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGC
JMSF017M19+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGCTC
JMSF011H04+ GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTNGGCTATGCTCC
____________________________________________________________
consensus GGCGTTTGGGGAGAGTTTTTGAATTTGTAAATTCTGAAAAGGCCTCGTTGGCTATGCTCC