| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF035F18 | Sequence | 306 | 007792 (8) | gb|ADV02773.1| | 9e-23 | lipid transfer protein 1b, partial [Ipomoea batatas] | 375 | 007792 (8) | gb|ADV02773.1| | 4e-11 | lipid transfer protein 1b, partial [Ipomoea batatas] |
| JMFN007M24 | Sequence | 292 | 007792 (8) | gb|ADV02773.1| | 5e-09 | lipid transfer protein 1b, partial [Ipomoea batatas] | |||||
| JMFN014G16 | Sequence | 607 | 007792 (8) | gb|ADV02773.1| | 3e-47 | lipid transfer protein 1b, partial [Ipomoea batatas] | |||||
| JMFN035F03 | Sequence | 564 | 007792 (8) | gb|ADV02773.1| | 2e-47 | lipid transfer protein 1b, partial [Ipomoea batatas] | |||||
| JMFN046F21 | Sequence | 196 | 007792 (8) | ||||||||
| JMFS169F04 | Sequence | 590 | 007792 (8) | gb|ADV02773.1| | 2e-47 | lipid transfer protein 1b, partial [Ipomoea batatas] | |||||
| JMSF011D21 | Sequence | 318 | 007792 (8) | gb|ADV02773.1| | 5e-26 | lipid transfer protein 1b, partial [Ipomoea batatas] | 141 | 014974 | |||
This contig is upended
. : . : . : . : . : . :
JMFN007M24+ ATATATATATAT
JMFN035F03+ ATATATATATAT
____________________________________________________________
consensus ATATATATATAT
. : . : . : . : . : . :
JMFN007M24+ ATATATATATATATATATATATATCTATATATATATATATATATATATATATATAAAACA
rJMFF035F18- ATATATATATATATATATATATAAAACA
JMFN035F03+ ATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAACA
JMFS169F04+ ATATATATATATATATATATATAAACCA
JMFN014G16+ ATATATATATATATATATATATAAAACA
____________________________________________________________
consensus ATATATATATATATATATATATATCTATATATATATATATATATATATATATATAAAACA
. : . : . : . : . : . :
JMFN007M24+ AGAGCTGCTCTCAAGGAGTCTGTACGCCATAGATGGAGAATCTTCTTTTTTCCTCTTATT
rJMFF035F18- AGAGCTGCACTCNNGGAGTCTGTACGCCATANCTGGAGAATCTTCTTTTTTCCTCTTATT
JMFN035F03+ AGAGCTGCACTCAAGGAGTCTGTACGCCATAGCTGGAGAATCTTCTTTTTTCCTCTTATT
JMFS169F04+ AGAGCTGCACTCAAGGAGTCTGTACGCCATAGCTGGAGAATCTTCTTTTTTCCTCTTATT
JMFN014G16+ AGAGCTGCACTCAAGGAGTCTGTACGCCATAGCTGGAGAATCTTCTTTTTTCCTCTTATT
____________________________________________________________
consensus AGAGCTGCACTCAAGGAGTCTGTACGCCATAGCTGGAGAATCTTCTTTTTTCCTCTTATT
. : . : . : . : . : . :
JMFN007M24+ TAATCAACTCCATGATGCAGCATTAATCGTCTTTTCATGATTAATGCACCGTTGCGCAGT
rJMFF035F18- TAACCAACTCCATGATGCAGCATTTATCGTCTTCTCNTGCTTACTGCACCGTTGCGCAGT
JMFN035F03+ TAATCAACTCCATGATGCAGCATTTATCGTCTTCTCATGCTTACTGCACCGTTGCGCAGT
JMFS169F04+ TAATCAACTCCATGATGCAGCATTTATCGTCTTCTCATGCTTACTGCACCGTTGCGCAGT
JMFN014G16+ TAATCAACTCCATGATGCAGCATTTATCGTCTTCTCATGCTTACTGCACCGTTGCGCAGT
____________________________________________________________
consensus TAATCAACTCCATGATGCAGCATTTATCGTCTTCTCATGCTTACTGCACCGTTGCGCAGT
. : . : . : . : . : . :
JMFN007M24+ TAATGGAGAGGGTGATCTTGTAGGGAAGGGTAACGCCACATTTAT-GGGGGAGGGCGGCG
rJMFF035F18- TANTGGAGGGGGTGATCTTGTAGGGAAGGGTAACGCCACATTTTTGGGGGGAGGGCGGCG
JMFN035F03+ TAATGGAGGGGGTGATCTTGTAGGGAAGGGTAACGCCACATTTTT-GGGGGAGGGCGGCG
JMFS169F04+ TAATGGAGGGGGTGATCTTGTAGGGAAGGGTAACGCCACATTTTT-GGGGGAGGGCGGCG
JMFN014G16+ TAATGGAGGGGGTGATCTTGTAGGGAAGGGTAACGCCACATTTTT-GGGGGAGGGCGGCG
____________________________________________________________
consensus TAATGGAGGGGGTGATCTTGTAGGGAAGGGTAACGCCACATTTTT-GGGGGAGGGCGGCG
. : . : . : . : . : . :
JMFN007M24+ GCCAGGTCGAGCCTCACGCCGGGGACAGAGCCGGCGGCGTT
rJMFF035F18- GCCAGGTCGAGCCTCACGCCGGGGACAGAGCCGGCGGCGTTCTTCATGCANTTGCAAACG
JMFN035F03+ GCCAGGTCGAGCCTCACGCCGGGGACAGAGCCGGCGGCGTTCTTCATGCAGTTGCAAACG
JMFS169F04+ GCCAGGTCGAGCCTCACGCCGGGGACAGAGCCGGCGGCGTTCTTCATGCAGTTGCAAACG
JMFN014G16+ GCCAGGTCGAGCCTCACGCCGGGGACAGAGCCGGCGGCGTTCTTCATGCAGTTGCAAACG
JMFF035F18+ TTGCAAACG
JMSF011D21+ TTCATGCAGTTGCAAACG
____________________________________________________________
consensus GCCAGGTCGAGCCTCACGCCGGGGACAGAGCCGGCGGCGTTCTTCATGCAGTTGCAAACG
. : . : . : . : . : . :
rJMFF035F18- GTCTGGCGGTCGGCGGTGGTGGC
JMFN035F03+ GTCTGGCGGTCGGCGGTGGTGGCGGCGGATCTATAGAGGGATCTGATCCCGTCGCAGCAG
JMFS169F04+ GTCTGGCGGTCGGCGGTGGTGGCGGCGGATCTATAGAGGGATCTGATCCCGTCGCAGCAG
JMFN014G16+ GTCTGGCGGTCGGCGGTGGTGGCGGCGGATCTATAGAGGGATCTGATCCCGTCGCAGCAG
JMFF035F18+ GTCTGGCGGTCGGCGGTGGTGGCGGCGGATCTATAGAGGGATCTGATCCCGTCGCAGCAG
JMSF011D21+ GTCTGGCGGTCGGCGGTGGTGGCGGCGGATCTATAGAGGGATCTGATCCCGTCGCAGCAG
____________________________________________________________
consensus GTCTGGCGGTCGGCGGTGGTGGCGGCGGATCTATAGAGGGATCTGATCCCGTCGCAGCAG
. : . : . : . : . : . :
JMFN035F03+ TTCATCGGAACCGCACCGCCGTTCCTCACGTAGTCCAGGCACGGGTACAAGTCGGTTACT
JMFS169F04+ TTCATCGGAACCGCACCGCCGTTCCTCACGTAGTCCAGGCACGGGTACAAGTCGGTTACT
JMFN014G16+ TTCATCGGAACCGCACCGCCGTTCCTCACGTAGTCCAGGCACGGGTACAAGTCGGTTACT
JMFN046F21- GTCGGTTACT
JMFF035F18+ TTCATCGGANCCGCACCGCCGTTCCTCACGTAGTCCAGGCACGGGTACAAGTCGGTTACT
JMSF011D21+ TTCATCGGAACCGCACCGCCGTTCCTCACGTAGTCCAGGCACGGGTACAAGTCGGTTACT
____________________________________________________________
consensus TTCATCGGAACCGCACCGCCGTTCCTCACGTAGTCCAGGCACGGGTACAAGTCGGTTACT
. : . : . : . : . : . :
JMFN035F03+ ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
JMFS169F04+ ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
JMFN014G16+ ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
JMFN046F21- ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
JMFF035F18+ ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
JMSF011D21+ ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
____________________________________________________________
consensus ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
. : . : . : . : . : . :
JMFN035F03+ ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAATAGAGACTT
JMFS169F04+ ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAATAGAGACTT
JMFN014G16+ ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAATAGAGACTT
JMFN046F21- ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAA
JMFF035F18+ ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAATAGAGACTT
JMSF011D21+ ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAATAGAGACTT
____________________________________________________________
consensus ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAATAGAGACTT
. : . : . : . : . : . :
JMFN035F03+ AATTAGCTTGGAG
JMFS169F04+ AATTAGCTTGGAGAAA
JMFN014G16+ AATTAGCTTGGAGAAA
JMFF035F18+ AATTAGCTTGGAGAAAGGTTTAGAATTGGAAGGGAAAGGAAGTAGAATGCTTTGTGT
JMSF011D21+ AATTAGCTTGGAGAAAGGTTTAGAATTGGAAGGGAAAGGAAGTAGAATGCTTTGTGTGTC
____________________________________________________________
consensus AATTAGCTTGGAGAAAGGTTTAGAATTGGAAGGGAAAGGAAGTAGAATGCTTTGTGTGTC