Contig 007774:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002B22Sequence317007774 (5)ref|XP_011097013.1|3e-36PREDICTED: actin-related protein 4 isoform X2 [Sesamum indicum]714005485 (5)ref|XP_009774266.1|2e-121PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris]
JMFF039I15Sequence579007774 (5)ref|XP_009612119.1|6e-114PREDICTED: actin-related protein 4 isoform X2 [Nicotiana tomentosiformis]827005485 (5)ref|XP_009774266.1|9e-78PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris]
JMSF008H19Sequence366007774 (5)emb|CDO98459.1|5e-42unnamed protein product [Coffea canephora]794005485 (5)ref|XP_009774266.1|1e-116PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris]
JMSF020K17Sequence662007774 (5)ref|XP_009612118.1|2e-118PREDICTED: actin-related protein 4 isoform X1 [Nicotiana tomentosiformis]785005485 (5)ref|XP_009774266.1|5e-100PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris]
JMSF024D13Sequence662007774 (5)ref|XP_009612118.1|2e-118PREDICTED: actin-related protein 4 isoform X1 [Nicotiana tomentosiformis]814005485 (5)ref|XP_009774266.1|4e-110PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF020K17+                                                           CCTATAGGAGAT
JMSF024D13+                                                           CCTATAGGAGAT
                      ____________________________________________________________
consensus                                                             CCTATAGGAGAT
 
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JMSF020K17+           GTAGTAACAGCCTTTTGAAGAACGTATCCATCATGCACAGGAGCAATGGTAGTTGATCCA
JMSF024D13+           GTAGTAACAGCCTTTTGAAGAACGTATCCATCATGCACAGGAGCAATGGTAGTTGATCCA
                      ____________________________________________________________
consensus             GTAGTAACAGCCTTTTGAAGAACGTATCCATCATGCACAGGAGCAATGGTAGTTGATCCA
 
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JMSF020K17+           CCACCACTATCTACGACCAAAGAAGTGGCGCGTCCTGATGCAAAAGATGTTAGAACAGCA
JMFF039I15+                     CTACGACCAAAGAAGTGGCGCGTCCTGATGCAAAAGATGTTAGAACAGCA
JMSF024D13+           CCACCACTATCTACGACCAAAGAAGTGGCGCGTCCTGATGCAAAAGATGTTAGAACAGCA
                      ____________________________________________________________
consensus             CCACCACTATCTACGACCAAAGAAGTGGCGCGTCCTGATGCAAAAGATGTTAGAACAGCA
 
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JMSF020K17+           TTTTTGGCCAAAAACAAAGCAGGGACTTGGTATTTTTCAAACATAAGCTCTGCAGCCTTT
JMFF039I15+           TTTTTGGCCAAAAACAAAGCAGGGACTTGGTATTTTTCAAACATAAGCTCTGCAGCCTTT
JMSF024D13+           TTTTTGGCCAAAAACAAAGCAGGGACTTGGTATTTTTCAAACATAAGCTCTGCAGCCTTT
                      ____________________________________________________________
consensus             TTTTTGGCCAAAAACAAAGCAGGGACTTGGTATTTTTCAAACATAAGCTCTGCAGCCTTT
 
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JMSF020K17+           TCTCTCTGTTGTTGAGTATTGGAACATGGCTCAGCAAGTAGCATTGGATGCTCTTTAGGA
JMFF039I15+           TCTCTCTGTTGTTGAGTATTGGAACATGGCTCAGCAAGTAGCATTGGATGCTCTTTAGGA
JMSF024D13+           TCTCTCTGTTGTTGAGTATTGGAACATGGCTCAGCAAGTAGCATTGGATGCTCTTTAGGA
                      ____________________________________________________________
consensus             TCTCTCTGTTGTTGAGTATTGGAACATGGCTCAGCAAGTAGCATTGGATGCTCTTTAGGA
 
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JMSF020K17+           TCAATCAGCAAGCATTCCCTGAAGGCATGGTCCCATATGTTTTCAACAATTTCCCAGTCC
JMFF039I15+           TCAATCAGCAAGCATTCCCTGAAGGCATGGTCCCATATGTTTTCAACAATTTCCCAGTCC
JMSF024D13+           TCAATCAGCAAGCATTCCCTGAAGGCATGGTCCCATATGTTTTCAACAATTTCCCAGTCC
JMSF008H19+                                                                 CAGTCC
                      ____________________________________________________________
consensus             TCAATCAGCAAGCATTCCCTGAAGGCATGGTCCCATATGTTTTCAACAATTTCCCAGTCC
 
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JMSF020K17+           GCAACTATTCCATCCTTAATGGGTGAGAGTGCCTCCATGTGATCCCGGCGGAATCCCAAG
JMFF039I15+           GCAACTATTCCATCCTTAATGGGTGAGAGTGCCTCCATGTGATCCCGGCGGAATCCCAAG
JMFF002B22+                                  TGAGAGTGCCTCCATGTGATCCCGGCGGAATCCCAAG
JMSF024D13+           GCAACTATTCCATCCTTAATGGGTGAGAGTGCCTCCATGTGATCCCGGCGGAATCCCAAG
JMSF008H19+           GCAACTATTCCATCCTTAATGGGTGAGAGTGCCTCCATGTGATCCCGGCGGAATCCCAAG
                      ____________________________________________________________
consensus             GCAACTATTCCATCCTTAATGGGTGAGAGTGCCTCCATGTGATCCCGGCGGAATCCCAAG
 
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JMSF020K17+           GATTGAGATCCTACATACAATTTTCGCTTGCCCTTGGACTTAGAGTCAGGGGCAGATCCA
JMFF039I15+           GATTGAGATCCTACATACAATTTTCGCTTGCCCTTGGACTTAGAGTCAGGGGCAGATCCA
JMFF002B22+           GATTGAGATCCTACATACAATTTTCGCTTGCCCTTGGACTTAGAGTCAGGGGCAGATCCA
JMSF024D13+           GATTGAGATCCTACATACAATTTTCGCTTGCCCTTGGACTTAGAGTCAGGGGCAGATCCA
JMSF008H19+           GATTGAGATCCTACATACAATTTTCGCTTGCCCTTGGACTTAGAGTCAGGGGCAGATCCA
                      ____________________________________________________________
consensus             GATTGAGATCCTACATACAATTTTCGCTTGCCCTTGGACTTAGAGTCAGGGGCAGATCCA
 
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JMSF020K17+           GAATTATTATCTGGATTATCAGGATTATCAACTTCCATTTGATCAATTGATCCAACAATA
JMFF039I15+           GAATTATTATCTGGATTACCAGGATTATCAACTTCCATTTGATCAATTGATCCAACAATA
JMFF002B22+           GAATTATTATCTGGATTATCAGGATTATCAACTTCCATTTGATCAATTGATCCAACAATA
JMSF024D13+           GAATTATTATCTGGATTATCAGGATTATCAACTTCCATTTGATCAATTGATCCAACAATA
JMSF008H19+           GAATTATTATCTGGATTATCAGGATTATCAACTTCCATTTGATCAATTGATCCAACAATA
                      ____________________________________________________________
consensus             GAATTATTATCTGGATTATCAGGATTATCAACTTCCATTTGATCAATTGATCCAACAATA
 
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JMSF020K17+           GAAGGAAAAACGGCTTTGGGAGCATCTTCGCCAGCGTAACCAGCCTTGCAAGTGTGAGAA
JMFF039I15+           GAAGGAAAAACGGCTTTGGGAGCATCTTCGCCAGCGTAACCAGCCTTGCAAGTGTGAGAA
JMFF002B22+           GAAGGAAAAACGGCTTTGGGAGCATCTTCGCCAGCGTAACCAGCCTTGCAAGTGTGAGAA
JMSF024D13+           GAAGGAAAAACGGCTTTGGGAGCATCTTCGCCAGCGTAACCAGCCTTGCAAGTGTGAGAA
JMSF008H19+           GAAGGAAAAACGGCTTTGGGAGCATCTTCGCCAGCGTAACCAGCCTTGCAAGTGTGAGAA
                      ____________________________________________________________
consensus             GAAGGAAAAACGGCTTTGGGAGCATCTTCGCCAGCGTAACCAGCCTTGCAAGTGTGAGAA
 
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JMSF020K17+           CCCAAGTCTACGACTATCGCAGAGACTTCATCTCCTCCGTACATGATTGAAGAAGAAGTG
JMFF039I15+           CCCAAGTCTACGACTATCGCAGAGACTTCATCTCCTCCGTACATGATTGAAGAAGAAGTG
JMFF002B22+           CCCAAGTCTACGACTATCGCAGAGACTTCATCTCCTCCGTACATGATTGAAGAAGAAGTG
JMSF024D13+           CCCAAGTCTACGACTATCGCAGAGACTTCATCTCCTCCGTACATGATTGAAGAAGAAGTG
JMSF008H19+           CCCAAGTCTACGACTATCGCAGAGACTTCATCTCCTCCGTACATGATTGAAGAAGAAGTG
                      ____________________________________________________________
consensus             CCCAAGTCTACGACTATCGCAGAGACTTCATCTCCTCCGTACATGATTGAAGAAGAAGTG
 
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JMSF020K17+           TCTGAGCTTGCAGAATGCCAGAGGGATTGAAAGGGTTTTAGGGGTTT             
JMFF039I15+           TCTGAGCTTGCAGAATGCCAGAGGGATTGAAAGGGTTTTAGGGGTTT             
JMFF002B22+           TCTGAGCTTGCAGAATGCCAGAGGGATTGAAAGGGTTTT                     
JMSF024D13+           TCTGAGCTTGCAGAATGCCAGAGGGATTGAAAGGGTTTTAGGGGTTT             
JMSF008H19+           TCTGAGCTTGCAGAATGCCAGAGGGATTGAAAGGGTTTTAGGGGTTTTCAATTTTCTTCC
                      ____________________________________________________________
consensus             TCTGAGCTTGCAGAATGCCAGAGGGATTGAAAGGGTTTTAGGGGTTTTCAATTTTCTTCC