| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002D16 | Sequence | 344 | 007767 (9) | gb|ABC47163.2| | 3e-60 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 769 | 003930 (9) | gb|ABC47163.2| | 3e-92 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
| JMFF003C03 | Sequence | 107 | 007767 (9) | 546 | 003930 (9) | gb|ABC47163.2| | 3e-47 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | |||
| JMFF014L14 | Sequence | 528 | 007767 (9) | gb|ABC47163.2| | 7e-86 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 699 | 003930 (9) | gb|ABC47163.2| | 3e-76 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
| JMFF015C21 | Sequence | 613 | 007767 (9) | gb|ABC47163.2| | 2e-101 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 649 | 003930 (9) | gb|ABC47163.2| | 3e-65 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
| JMFF016P06 | Sequence | 549 | 007767 (9) | gb|ABC47163.2| | 5e-110 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 816 | 003930 (9) | gb|ABC47163.2| | 8e-96 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
| JMFF021B11 | Sequence | 542 | 007767 (9) | gb|ABC47163.2| | 2e-107 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 771 | 003930 (9) | gb|ABC47163.2| | 1e-91 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
| JMSF007G24 | Sequence | 278 | 007767 (9) | gb|ABC47163.2| | 3e-41 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 782 | 020293 | emb|CDO97861.1| | 3e-92 | unnamed protein product [Coffea canephora] |
| JMSF010F22 | Sequence | 341 | 007767 (9) | gb|ABC47163.2| | 3e-54 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 724 | 003930 (9) | gb|ABC47163.2| | 6e-87 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
| JMSF028G05 | Sequence | 635 | 007767 (9) | gb|ABC47163.2| | 5e-133 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 787 | 003930 (9) | gb|ABC47163.2| | 4e-84 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
This contig is upended
. : . : . : . : . : . :
JMFF015C21+ CGGAGCTCAAGAACAAGAAATTNTCAGGCTTCAAA
JMSF028G05+ CATCGGAGCTCAAGAACAAGAAATTCTCAGGCTTCAAA
____________________________________________________________
consensus CATCGGAGCTCAAGAACAAGAAATTCTCAGGCTTCAAA
. : . : . : . : . : . :
JMFF015C21+ TCCCGGTGCATAACCCCCATAGAGTGACAGTAGTGAAGAACGGTAACCATCTGACGGCAG
JMFF014L14+ CTGACGGCAG
JMFF016P06+ CTGACGGCAG
JMFF021B11+ CGGCAG
JMSF028G05+ TCCCGGTGCATAACCCCCATAGAGTGACAGTAGTGAAGAACGGTAACCATCTGACGGCAG
____________________________________________________________
consensus TCCCGGTGCATAACCCCCATAGAGTGACAGTAGTGAAGAACGGTAACCATCTGACGGCAG
. : . : . : . : . : . :
JMFF015C21+ AGGCCGGCGGCGGCGCGTTCGGAGTAGTGGCCCTTGGCGATGATACGGTCGAAGAGCTCG
JMFF014L14+ AGGCCGGCGGCGGCGCGTTCGGAGTAGTGGCCCTTGGCGATGATACGGTCGAAGAGCTCG
JMFF016P06+ AGGCCGGCGGCGGCGCGTTCGGAGTAGTGGCCCTTGGCGATGATACGGTCGAAGAGCTCG
JMFF021B11+ AGGCCGGCGGCGGCGCGTTCGGAGTAGTGGCCCTTGGCGATGATACGGTCGAAGAGCTCG
JMSF028G05+ AGGCCGGCGGCGGCGCGTTCGGAGTAGTGGCCCTTGGCGATGATACGGTCGAAGAGCTCG
____________________________________________________________
consensus AGGCCGGCGGCGGCGCGTTCGGAGTAGTGGCCCTTGGCGATGATACGGTCGAAGAGCTCG
. : . : . : . : . : . :
JMFF015C21+ CCGCCAGCGCAGAG-CTCCATGACTAGGTGGACGTGGTTGCGGTCCTCATAGGTTCCCTT
JMFF014L14+ CCGCCAGCGCAGAGNCTCCATGACTAGGTGGACGTGGTTGCGGTCCTCATAGGTTCCCTT
JMFF016P06+ CCGCCAGCGCAGAG-CTCCATGACTAGGTGGACGTGGTTGCGGTCCTCATAGGTTCCCTT
JMFF021B11+ CCGCCAGCGCAGAG-CTCCATGACTAGGTGGACGTGGTTGCGGTCCTCATAGGTTCCCTT
JMSF028G05+ CCGCCAGCGCAGAG-CTCCATGACTAGGTGGACGTGGTTGCGGTCCTCATAGGTTCCCTT
____________________________________________________________
consensus CCGCCAGCGCAGAG-CTCCATGACTAGGTGGACGTGGTTGCGGTCCTCATAGGTTCCCTT
. : . : . : . : . : . :
JMFF015C21+ GAGCTCGACGATGTTGCGGTGGCCGGTGAGGTGGTGCATAATCTGGACCTCACGCCGGAC
JMFF014L14+ GAGCTCGACGATGTTGCGGTGGCCGGTGAGGTGGTGCATAATCTGGACCTCACGCCGGAC
JMFF002D16+ CCGGAC
JMFF016P06+ GAGCTCGACGATGTTGCGGTGGCCGGTGAGGTGGTGCATAATCTGGACCTCACGCCGGAC
JMFF021B11+ GAGCTCGACGATGTTGCGGTGGCCGGTGAGGTGGTGCATAATCTGGACCTCACGCCGGAC
JMSF028G05+ GAGCTCGACGATGTTGCGGTGGCCGGTGAGGTGGTGCATAATCTGGACCTCACGCCGGAC
____________________________________________________________
consensus GAGCTCGACGATGTTGCGGTGGCCGGTGAGGTGGTGCATAATCTGGACCTCACGCCGGAC
. : . : . : . : . : . :
JMFF015C21+ ATCGTCAACGTCGTCCTTGGAGAGAAGCTTGCGCGTGGCGATTGACTTGCAGGCGAGGCG
JMFF014L14+ ATCGTCAACGTCGTCCTTGGAGAGAAGCTTGCGCGTGGCGATTGACTTGCAGGCGAGGCG
JMFF002D16+ ATCGTCAACGTCGTCCTTGGAGAGAAGCTTGCGCGTGGCGATTGACTTGCAGGCGAGGCG
JMFF016P06+ ATCGTCAACGTCGTCCTTGGAGAGAAGCTTGCGCGTGGCGATTGACTTGCAGGCGAGGCG
JMFF021B11+ ATCGTCAACGTCGTCCTTGGAGAGAAGCTTGCGCGTGGCGATTGACTTGCAGGCGAGGCG
JMSF028G05+ ATCGTCAACGTCGTCCTTGGAGAGAAGCTTGCGCGTGGCGATTGACTTGCAGGCGAGGCG
JMSF010F22+ TGGAGAGAAGCTTGCGCGTGGCGATTGACTTGCAGGCGAGGCG
____________________________________________________________
consensus ATCGTCAACGTCGTCCTTGGAGAGAAGCTTGCGCGTGGCGATTGACTTGCAGGCGAGGCG
. : . : . : . : . : . :
JMFF015C21+ CTCGCGCGTCTTGCGGTGGGTGACTAGGTAGGTGACCCCGAACTGTCCCCGACCTAGCTC
JMFF014L14+ CTCGCGCGTCTTGCGGTGGGTGACTAGGTAGGTGACCCCGAACTGTCCCCGACCTAGCT-
JMFF002D16+ CTCGCGCGTCTTGCGGTGGGTGACTAGGTAGGTGACCCCGAACTGTCCCCGACCTAGCT-
JMFF016P06+ CTCGCGCGTCTTGCGGTGGGTGACTAGGTAGGTGACCCCGAACTGTCCCCGACCTAGCT-
JMFF021B11+ CTCGCGCGTCTTGCGGTGGGTGACTAGGTAGGTGACCCCGAACTGTCCCCGACCTAGCT-
JMSF028G05+ CTCGCGCGTCTTGCGGTGGGTGACTAGGTAGGTGACCCCGAACTGTCCCCGACCTAGCT-
JMSF010F22+ CTCGCGCGTCTTGCGGTGGGTGACTAGGTAGGTGACCCCGAACTGTCCCCGACCTAGCT-
JMSF007G24+ TGACTAGGTAGGTGACCCCGAACTGTCCCCGACCTAGCT-
____________________________________________________________
consensus CTCGCGCGTCTTGCGGTGGGTGACTAGGTAGGTGACCCCGAACTGTCCCCGACCTAGCT-
. : . : . : . : . : . :
JMFF015C21+ CCCCCCCAAAAATGTAGGTGGAGTGGACGTCCTCCATGGGGCGCCCAAGGACGCGGCCGA
JMFF014L14+ CCCCCCCAAAAATGTAGGTGGAGTGGACGTCCTCCATGGGGCGCCCAAGGACGCGGCCGA
JMFF002D16+ CCCCCCCAAAAATGTAGGTGGAGTGGACGTCCTCCATGGGGCGCCCAAGGACGCGGCCGA
JMFF016P06+ CCCCCCCAAAAATGTAGGTGGAGTGGACGTCCTCCATGGGGCGCCCAAGGACGCGGCCGA
JMFF021B11+ CCCCCCCAAAAATGTAGGTGGAGTGGACGTCCTCCATGGGGCGCCCAAGGACGCGGCCGA
JMSF028G05+ CCCCCCCAAAAATGTAGGTGGAGTGGACGTCCTCCATGGGGCGCCCAAGGACGCGGCCGA
JMSF010F22+ CCCCCCCAAAAATGTAGGTGGAGTGGACGTCCTCCATGGGGCGCCCAAGGACGCGGCCGA
JMSF007G24+ CCCCCCCAAAAATGTAGGTGGAGTGGACGTCCTCCATGGGGCGCCCAAGGACGCGGCCGA
____________________________________________________________
consensus CCCCCCCAAAAATGTAGGTGGAGTGGACGTCCTCCATGGGGCGCCCAAGGACGCGGCCGA
. : . : . : . : . : . :
JMFF015C21+ CGCCGGAGAGGAAGGGACGTGGAGGGGGAGGCTGGGAGGGCGGAAGGACGGTGATGTCAT
JMFF014L14+ CGCCGGAGAGGAAGGGACGTGGAGGGGGAGGCTGGGAGGGCGGAAGGACGGTGATGTCAT
JMFF002D16+ CGCCGGAGAGGAAGGGACGTGGAGGGGGAGGCTGGGAGGGCGGAAGGACGGTGATGTCAT
JMFF003C03+ ATGTCAT
JMFF016P06+ CGCCGGAGAGGAAGGGACGTGGAGGGGGAGGCTGGGAGGGCGGAAGGACGGTGATGTCAT
JMFF021B11+ CGCCGGAGAGGAAGGGACGTGGAGGGGGAGGCTGGGAGGGCGGAAGGACGGTGATGTCAT
JMSF028G05+ CGCCGGAGAGGAAGGGACGTGGAGGGGGAGGCTGGGAGGGCGGAAGGACGGTGATGTCAT
JMSF010F22+ CGCCGGAGAGGAAGGGACGTGGAGGGGGAGGCTGGGAGGGCGGAAGGACGGTGATGTCAT
JMSF007G24+ CGCCGGAGAGGAAGGGACGTGGAGGGGGAGGCTGGGAGGGCGGAAGGACGGTGATGTCAT
____________________________________________________________
consensus CGCCGGAGAGGAAGGGACGTGGAGGGGGAGGCTGGGAGGGCGGAAGGACGGTGATGTCAT
. : . : . : . : . : . :
JMFF015C21+ TTTTCGGCGGCGGTGGATCGCTTTCTCCGCCGGCTGAAGTGGCGGCAAA-GGGCGACGAA
JMFF014L14+ TTTTCGGCGGCGGTGGATCGCTTTCTCCGCCGGCTGAAGTGGCGGCAAA-GGGCGACGAA
JMFF002D16+ TTTTCGGCGGCGGTGGATCGCTTTCTCCGCCGGCTGAAGTGGCGGCAAA-GGGCGACGAA
JMFF003C03+ NTTTCGNCGGCGGTGGATCGCTTTCTCCGCCGGCTGAAGTGGCGGCAAAGGGGCGNCGAA
JMFF016P06+ TTTTCGGCGGCGGTGGATCGCTTTCTCCGCCGGCTGAAGTGGCGGCAAA-GGGCGACGAA
JMFF021B11+ TTTTCGGCGGCGGTGGATCGCTTTCTCCGCCGGCTGAAGTGGCGGCAAA-GGGCGACGAA
JMSF028G05+ TTTTCGGCGGCGGTGGATCGCTTTCTCCGCCGGCTGAAGTGGCGGCAAA-GGGCGACGAA
JMSF010F22+ TTTTTGGCGGCGGTGGATCGCTTTCTCCGCCGGCTGAAGTGGCGGCAAA-GGGCGACGAA
JMSF007G24+ TTTTCGGCGGCGGTGGATCGCTTTCTCCGCCGGCTGAAGTGGCGGCAAA-GGGCGACGAA
____________________________________________________________
consensus TTTTCGGCGGCGGTGGATCGCTTTCTCCGCCGGCTGAAGTGGCGGCAAA-GGGCGACGAA
. : . : . : . : . : . :
JMFF015C21+ GGTATGCTGTTACAACTCCCCATTTGAAGGTAGACGACCC
JMFF014L14+ GGTATGCTGTTACAACTCCCCATTTGAAGGTAGACG
JMFF002D16+ GGTATGCTGTTACAACTCCCCATTTGAAGGTAGACGACCC
JMFF003C03+ GGTATGCTGTTACAACTCCCCATTNGAAGGTAGACGACCC
JMFF016P06+ GGTATGCTGTTACAACTCCCCATTTGAAGGTAGACGACCCAAGTCAAACTGCTAAT
JMFF021B11+ GGTATGCTGTTACAACTCCCCATTTGAAGGTAGACGACCCAAGTCAAACTGCTAATTCT
JMSF028G05+ GGTATGCTGTTACAACTCCCCATTTGAAGGTAGACGACCCAAGTCAAACTGCTAATTCT
JMSF010F22+ GGTATGCTGTTACAACTCCCCATTTGAAGGTAGACGACCCAAGTCAAACTGCTAATTCT
JMSF007G24+ GGTATGCTGTTACAACTCCCCATTTGAAGGTAGACGACCCAAGTCAAACTGCTAATTCTC
____________________________________________________________
consensus GGTATGCTGTTACAACTCCCCATTTGAAGGTAGACGACCCAAGTCAAACTGCTAATTCTC