Contig 007764:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS031E03Sequence485007764 (6)ref|XP_006293317.1|5e-109hypothetical protein CARUB_v100191860mg, partial [Capsella rubella] gb|EOA26215.
JMFS118D06Sequence622007764 (6)ref|XP_004236765.1|3e-96PREDICTED: splicing factor 3B subunit 3-like [Solanum lycopersicum]
JMFS124B09Sequence566007764 (6)ref|XP_004236765.1|9e-100PREDICTED: splicing factor 3B subunit 3-like [Solanum lycopersicum]
JMFS137D09Sequence579007764 (6)emb|CDP21592.1|7e-128unnamed protein product [Coffea canephora]
JMSF007C18Sequence300007764 (6)ref|XP_009797333.1|1e-05PREDICTED: splicing factor 3B subunit 3-like [Nicotiana sylvestris]748013101 (6)gb|ADE75875.1|9e-53unknown [Picea sitchensis]
JMSF014M13Sequence247007764 (6)ref|XP_009797333.1|1e-11PREDICTED: splicing factor 3B subunit 3-like [Nicotiana sylvestris]783013101 (6)ref|NP_001140370.1|3e-75uncharacterized protein LOC100272422 [Zea mays] gb|ACF83686.1| unknown [Zea mays

Alignment

This contig is upended


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JMFS137D09+                                                            ATCCATGATTG
                      ____________________________________________________________
consensus                                                              ATCCATGATTG
 
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JMFS137D09+           GCATCAAGCTCTCCACTTGATCAATCCTAACAAGATTCTTCAGCTTCCTTGGCTGGAAAA
                      ____________________________________________________________
consensus             GCATCAAGCTCTCCACTTGATCAATCCTAACAAGATTCTTCAGCTTCCTTGGCTGGAAAA
 
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JMFS137D09+           ATACAGGCTGGAAACCTTCATCCGTTTCCATAAGTGTAGATGATGAAGCTTCAACGTCTG
                      ____________________________________________________________
consensus             ATACAGGCTGGAAACCTTCATCCGTTTCCATAAGTGTAGATGATGAAGCTTCAACGTCTG
 
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JMFS137D09+           GATCATCTCCTATTGCCTGAAACTGATACAAAGCATGGTTCCCAAACTCTGATGCAGCAA
                      ____________________________________________________________
consensus             GATCATCTCCTATTGCCTGAAACTGATACAAAGCATGGTTCCCAAACTCTGATGCAGCAA
 
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JMFS137D09+           ATAGGAAACCTGACTTCAAAACACATAATGAAGACGTGACTGGAATTGTATCAAAGTACT
                      ____________________________________________________________
consensus             ATAGGAAACCTGACTTCAAAACACATAATGAAGACGTGACTGGAATTGTATCAAAGTACT
 
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JMFS137D09+           TGATCTTTAACTCCTTAACCCTGTCATTGTCATGATCCAAAGTAACCTTAAAAATATCCC
                      ____________________________________________________________
consensus             TGATCTTTAACTCCTTAACCCTGTCATTGTCATGATCCAAAGTAACCTTAAAAATATCCC
 
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JMFS137D09+           CATACTCCGTTTGCAAAAGAAAGAAAAACATTGACTTCTGCTTATGCATAGCAGCTGAAA
                      ____________________________________________________________
consensus             CATACTCCGTTTGCAAAAGAAAGAAAAACATTGACTTCTGCTTATGCATAGCAGCTGAAA
 
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JMFS137D09+           CAATCAGAACACCTCGCTCAGCAGGCAAATCCGCACGCCTAGGAATCACAGCCCGAATAT
JMFS031E03+                                    CAAATCCGCACGCCTAGGAATCACAGCCCGAATAT
                      ____________________________________________________________
consensus             CAATCAGAACACCTCGCTCAGCAGGCAAATCCGCACGCCTAGGAATCACAGCCCGAATAT
 
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JMFS137D09+           CAGGATGACCTTGGTTCTTATATATAACAAAATTTTCGGCACACACAAGCACACCACTTG
JMFS031E03+           CAGGATGACCTTGGTTCTTATATATAACAAAATTTTCGGCACACACAAGCACACCACTTG
                      ____________________________________________________________
consensus             CAGGATGACCTTGGTTCTTATATATAACAAAATTTTCGGCACACACAAGCACACCACTTG
 
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JMFS137D09+           GTCCATCCCCACCACCAGGAACAGTCACAAGAAGGTTAGCACCATTATCAACCTGTTCTG
JMFS031E03+           GTCCATCCCCACCACCAGGAACAGTCACAAGAAGGTTAGCACCATTATCAACCTGTTCTG
                      ____________________________________________________________
consensus             GTCCATCCCCACCACCAGGAACAGTCACAAGAAGGTTAGCACCATTATCAACCTGTTCTG
 
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JMFS137D09+           ACCACTTCCTGGAGACGTGATTAAGCCC                                
JMFS031E03+           ACCACTTCCTGGAGACGTGATTAAGCCCCAAGTCCAACTCATAAAATGTCAAATGTTTCT
                      ____________________________________________________________
consensus             ACCACTTCCTGGAGACGTGATTAAGCCCCAAGTCCAACTCATAAAATGTCAAATGTTTCT
 
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JMFS031E03+           GAGCCTCACTGGCAGCTTGGCCAGTTGGATCCTGATCAGCCTCAGAATAATCCAACTCAA
                      ____________________________________________________________
consensus             GAGCCTCACTGGCAGCTTGGCCAGTTGGATCCTGATCAGCCTCAGAATAATCCAACTCAA
 
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JMFS031E03+           CAGCGGCGAATATGGGGTTATCGAATCCACAATCAACACCACATATCGAGTATGTTATTG
                      ____________________________________________________________
consensus             CAGCGGCGAATATGGGGTTATCGAATCCACAATCAACACCACATATCGAGTATGTTATTG
 
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JMFS031E03+           TATGGCTCTTGTGAGCTTCTAGAGGTGAGGAAATCGTTAACCTAGCTGCAGTATCCCTAT
JMFS124B09+                     GTGAGCTTCTAGAGGTGAGGAAATCGTTAACCTAGCTGCAGTATCCCTAT
JMFS118D06+                                 AGGTGAGGAAATCGTTAACCTAGCTGCAGTATCCCTAT
                      ____________________________________________________________
consensus             TATGGCTCTTGTGAGCTTCTAGAGGTGAGGAAATCGTTAACCTAGCTGCAGTATCCCTAT
 
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JMFS031E03+           TCAAAACATAAACAAGCTTCTGTTTCTCACAAGCCCCGATCATAACAGCCCTACCTTTTG
JMFS124B09+           TCAAAACATAAACAAGCTTCTGTTTCTCACAAGCCCCGATCATAACAGCCCTACCTTTTG
JMFS118D06+           TCAAAACATAAACAAGCTTCTGTTTCTCACAAGCNCCGATCATAACAGCCCTACCTTTTG
                      ____________________________________________________________
consensus             TCAAAACATAAACAAGCTTCTGTTTCTCACAAGCCCCGATCATAACAGCCCTACCTTTTG
 
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JMFS031E03+           GGTCAATCGCCAGGTACTGACCCGGAACGA                              
JMFS124B09+           GGTCAATCGCCAGGTACTGACCCGGAACGATTCTCCTACACCCAGACTTCCCGAAAGTCT
JMFS118D06+           GGTCAATCGCCAGGTACTGACCCGGAACGATTCTCCTACACCCAGACTTCCCGAAAGTCT
                      ____________________________________________________________
consensus             GGTCAATCGCCAGGTACTGACCCGGAACGATTCTCCTACACCCAGACTTCCCGAAAGTCT
 
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JMFS124B09+           CCTGATGAACTTTATCGAAACAATTCTTCTCCTTATTATACTCCAAAATCACTATCCTTC
JMFS118D06+           CCTGATGAACTTTATCGAAACAATTCTTCTCCTTATTATACTCCAAAATCACTATCCTTC
                      ____________________________________________________________
consensus             CCTGATGAACTTTATCGAAACAATTCTTCTCCTTATTATACTCCAAAATCACTATCCTTC
 
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JMFS124B09+           CCGAATCCGACCCCACCACAATGTAATCTTTCTGAGCACCCGTAAGTCGAAACTGAGCTA
JMFS118D06+           CCGAATCCGACCCCACCACAATGTAATCTTTCTGAGCACCCGTAAGTCGAAACTGAGCTA
                      ____________________________________________________________
consensus             CCGAATCCGACCCCACCACAATGTAATCTTTCTGAGCACCCGTAAGTCGAAACTGAGCTA
 
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JMFS124B09+           ACGAACGAATGGCACCGAAGATTTCAACGGAGAGGAGGGTTTGGAGCTTACCGTTGTCAT
JMFS118D06+           ACGAACGAATGGCACCGAAGATTTCAACGGAGAGGAGGGTTTGGAGCTTACCGTTGTCAT
                      ____________________________________________________________
consensus             ACGAACGAATGGCACCGAAGATTTCAACGGAGAGGAGGGTTTGGAGCTTACCGTTGTCAT
 
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JMFS124B09+           CAGGGCGGATAAGGTCGAGGACTTTGCCACGGGCGACTACAATTTCTTGCACTTTTCCGC
JMSF014M13+                                          GGCGACTACAATTTCTTGCACTTTTCCGC
JMFS118D06+           CAGGGCGGATAAGGTCGAGGACTTTGCCACGGGCGACTACAATTTCTTGCACTTTTCCGC
                      ____________________________________________________________
consensus             CAGGGCGGATAAGGTCGAGGACTTTGCCACGGGCGACTACAATTTCTTGCACTTTTCCGC
 
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JMFS124B09+           CGGAGAAGCTCCCGTTGATGGCACAGAGTATGCCGGTGGGCTTCTGGAGAGTGAGACTGT
JMSF014M13+           CGGAGAAGCTCCCGTTGATGGCACAGAGTATGCCGGTGGGCTTCTGGAGAGTGAGACTGT
JMFS118D06+           CGGAGAAGCTCCCGTTGATGGCACAGAGTATGCCGGTGGGCTTCTGGAGAGTGAGACTGT
JMSF007C18+           CGGAGAAGCTCCCGTTGATGGCACAGAGTATGCCGGTGGGCTTCTGGAGAGTGAGACTGT
                      ____________________________________________________________
consensus             CGGAGAAGCTCCCGTTGATGGCACAGAGTATGCCGGTGGGCTTCTGGAGAGTGAGACTGT
 
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JMFS124B09+           AGAGATACATAATGGCGGGTCAGCCGGGGGGCAACGGGGAGTTGTTAGAAACCCTAGTAG
JMSF014M13+           AGAGATACATAATGGCGGGTCAGCCGGGGGGCAACGGGGAGTTGTTAGAAACCCTAGTAG
JMFS118D06+           AGAGATACATAATGGCGGGTCAGCCGGGGGGCAACGGGGAGTTGTTAGAAACCCTAGTAG
JMSF007C18+           AGAGATACATAATGGCGGGTCAGCCGGGGGGCAACGGGGAGTTGTTAGAAACCCTAGTAG
                      ____________________________________________________________
consensus             AGAGATACATAATGGCGGGTCAGCCGGGGGGCAACGGGGAGTTGTTAGAAACCCTAGTAG
 
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JMFS124B09+           TTGTTCTGGGTTGCAGAAGTTAGGGTGTTTCAGAGA                        
JMSF014M13+           TTGTTCTGGGTTGCAGAAGTTAGGGTGTTTCAGAGAGAAAAAATAGAGTGGAATCGAAAA
JMFS118D06+           TTGTTCTGGGTTGCAGAAGTTAGGGTGTTTCAGAGAGAAAAAATAGAGTGGAATCGAAAA
JMSF007C18+           TTGTTCTGGGTTGCAGAAGTTAGGGTGTTTCAGAGAGAAAAAATAGAGTGGAATCGAAAA
                      ____________________________________________________________
consensus             TTGTTCTGGGTTGCAGAAGTTAGGGTGTTTCAGAGAGAAAAAATAGAGTGGAATCGAAAA
 
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JMSF014M13+           ATTAGGGTTTAGAGATGAGAGTTTCGAAAATGAGCAT                       
JMFS118D06+           ATTAGGGTTTAGAGATGAGAGTTTCGAAAATGAGCAT                       
JMSF007C18+           ATTAGGGTTTAGAGATGAGAGTTTCGAAAATGAGCATAAACCCAGATAAGGCCGTGTTTG
                      ____________________________________________________________
consensus             ATTAGGGTTTAGAGATGAGAGTTTCGAAAATGAGCATAAACCCAGATAAGGCCGTGTTTG
 
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JMSF007C18+           GCGTTATCACTTATCAGGCGGTTATACCCATTTTGCTTTCCGAGCGCGGAGTAGCTTGCC
                      ____________________________________________________________
consensus             GCGTTATCACTTATCAGGCGGTTATACCCATTTTGCTTTCCGAGCGCGGAGTAGCTTGCC