Contig 007762:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS007G05Sequence626007762 (6)ref|XP_010648448.1|2e-81PREDICTED: retinoblastoma-related protein isoform X2 [Vitis vinifera] emb|CBI207
JMFS021D03Sequence631007762 (6)ref|XP_009774793.1|3e-56PREDICTED: retinoblastoma-related protein 1 isoform X4 [Nicotiana sylvestris]
JMFS122A12Sequence541007762 (6)ref|XP_004307078.1|1e-40PREDICTED: retinoblastoma-related protein [Fragaria vesca subsp. vesca]
JMSF007A08Sequence257007762 (6)790008598 (4)ref|XP_011086897.1|2e-99PREDICTED: retinoblastoma-related protein [Sesamum indicum] ref|XP_011086898.1|
JMSF034N05Sequence657007762 (6)ref|XP_009774793.1|4e-62PREDICTED: retinoblastoma-related protein 1 isoform X4 [Nicotiana sylvestris]655008598 (4)emb|CDP18998.1|2e-70unnamed protein product [Coffea canephora]
JMSF037F23Sequence681007762 (6)ref|NP_001266162.1|4e-75retinoblastoma-related protein 1 [Solanum lycopersicum] gb|AFD98848.1| retinobla659008598 (4)emb|CDP18998.1|2e-70unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS007G05+                                      GATGTCTCATAAATTNTGCAAAGTGATGCAACC
                      ____________________________________________________________
consensus                                        GATGTCTCATAAATTNTGCAAAGTGATGCAACC
 
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JMFS007G05+           AGGTCTACTTTGTCTCCATTCATAACAAAGCGTGTAGTTTCATTGAAGTTGAAACGTCTA
                      ____________________________________________________________
consensus             AGGTCTACTTTGTCTCCATTCATAACAAAGCGTGTAGTTTCATTGAAGTTGAAACGTCTA
 
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JMFS007G05+           AAATGAACAGGAACATGAATTATCAAGATAGCCAACACTGAAAGTAAACCGTTTGTGCAA
                      ____________________________________________________________
consensus             AAATGAACAGGAACATGAATTATCAAGATAGCCAACACTGAAAGTAAACCGTTTGTGCAA
 
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JMFS007G05+           GTCACAAGGTCCTTATAGTGGCCATACACATGAACGCGAAGTGAAAGAAATAGCAACCAT
JMSF037F23+                                                     GAAAGAAATAGCAACCAT
                      ____________________________________________________________
consensus             GTCACAAGGTCCTTATAGTGGCCATACACATGAACGCGAAGTGAAAGAAATAGCAACCAT
 
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JMFS007G05+           CCAAATCGATGATAGTCTGAAATGCGGCCAGTAGAATTAGCACTTGTTGGGTTGTTGTTT
JMSF037F23+           CCAAATCGATGATAGTCTGAAATGCGGCCAGTAGAATTAGCACTTGTTGGGTTGTTGTTT
                      ____________________________________________________________
consensus             CCAAATCGATGATAGTCTGAAATGCGGCCAGTAGAATTAGCACTTGTTGGGTTGTTGTTT
 
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JMFS007G05+           CCATTGGCATCACTTGTCAAGAAAAACTCTTGAAATGCACGTTTGTAATACTTGCTCAAA
JMSF037F23+           CCATTGGCATCACTTGTCAAGAAAAACTCTTGAAATGCACGTTTGTAATACTTGCTCAAA
JMFS021D03+                                                        TAATACTTGCTCAAA
JMSF034N05+                                           AAATGCACGTTTGTAATACTTGCTCAAA
                      ____________________________________________________________
consensus             CCATTGGCATCACTTGTCAAGAAAAACTCTTGAAATGCACGTTTGTAATACTTGCTCAAA
 
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JMFS007G05+           TGGCTCAAGTGCATAAAGTTTGTCTGTAATTCCTTTGCCTCAAGTCTTTTCTCCCAATCT
JMSF037F23+           TGGCTCAAGTGCATAAAGTTTGTCTGTAATTCCTTTGCCTCAAGTCTTTTCTCCCAATCT
JMFS021D03+           TGGCTCAAGTGCATAAAGTTGTCNTGTAATTCCTNTGCCTCAAGTCTTTTCTCCCAATCT
JMSF034N05+           TGGCTCAAGTGCATAAAGTTTGTCTGTAATTCCTTTGCCTCAAGTCTTTTCTCCCAATCT
                      ____________________________________________________________
consensus             TGGCTCAAGTGCATAAAGTTTGTCTGTAATTCCTTTGCCTCAAGTCTTTTCTCCCAATCT
 
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JMFS007G05+           GCACCATAAAGGCTGCTTAGAATTGGACCAACCTTGAGAATGAAATGAGGAAGTTCTTTG
JMSF037F23+           GCACCATAAAGGCTGCTTAGAATCGGACCAACCTTGAGAATGAAATGAGGAAGTTCTTTG
JMFS021D03+           GCACCATAAAGGCTGCTTAGAATTGGACCAACCTTGAGAATGAAATGAGGAAGTTCTTTG
JMFS122A12+                       CTGCTTAGAATTGGACCAACCTTGAGAATGAAATGAGGAAGTTCTTTG
JMSF034N05+           GCACCATAAAGGCTGCTTAGAATTGGACCAACCTTGAGAATGAAATGAGGAAGTTCTTTG
                      ____________________________________________________________
consensus             GCACCATAAAGGCTGCTTAGAATTGGACCAACCTTGAGAATGAAATGAGGAAGTTCTTTG
 
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JMFS007G05+           AAAAAGTCTGACATGTTAAGCTTTGCAGACCGTAAAACCTGGCATAAATTAAATCCAAAT
JMSF037F23+           AAAAAGTCTGACATGTTAAGCTTTGCAGACCGTAAAACCTGGCATAAATTAAATCCAAAT
JMFS021D03+           AAAAAGTCTGACATGTTAAGCTTTGCAGACCGTAAAACCTGGCATAAATTAAATCCAAAT
JMFS122A12+           AAAAAGTCTGACATGTTAAGCTTTGCAGACCGTAAAACCTGGCATAAATTAAATCCAAAT
JMSF034N05+           AAAAAGTCTGACATGTTAAGCTTTGCAGACCGTAAAACCTGGCATAAATTAAATCCAAAT
                      ____________________________________________________________
consensus             AAAAAGTCTGACATGTTAAGCTTTGCAGACCGTAAAACCTGGCATAAATTAAATCCAAAT
 
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JMFS007G05+           TCATCAGTATTGTGGTTTGAATTATCTGCTTCCTTCCCATTCAACTTTTTGACAGAGAAT
JMSF037F23+           TCATCAGTATTGTGGTTTGAATTATCTGCTTCCTTCCCATTCAACTTTTTGACAGAGAAT
JMFS021D03+           TCATCAGTATTGTGGTTTGAATTATCTGCTTCCTTCCCATTCAACTTTTTGACAGAGAAT
JMFS122A12+           TCATCAGTATTGTGGTTTGAATTATCTGCTTCCTTCCCATTCAACTTTTTGACAGAGAAT
JMSF034N05+           TCATCAGTATTGTGGTTTGAATTATCTGCTTCCTTCCCATTCAACTTTTTGACAGAGAAT
                      ____________________________________________________________
consensus             TCATCAGTATTGTGGTTTGAATTATCTGCTTCCTTCCCATTCAACTTTTTGACAGAGAAT
 
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JMFS007G05+           AGAACAAAAGCAAACCAATACCGTTCCGCATCCTCGGGC                     
JMSF037F23+           AGAACAAAAGCAAACCAATACCGTTCCGCATCCTCGGGCGTGCCGATTCCTATAGCAGAA
JMFS021D03+           AGAACAAAAGCAAACCAATACCGTTCCGCATCCTCGGGCGTGCCGATTCCTATAGCAGAA
JMFS122A12+           AGAACAAAAGCAAACCAATACCGTTCCGCATCCTCGGGCGTGCCGATTCCTATAGCAGAA
JMSF034N05+           AGAACAAAAGCAAACCAATACCGTTCCGCATCCTCGGGCGTGCCGATTCCTATAGCAGAA
                      ____________________________________________________________
consensus             AGAACAAAAGCAAACCAATACCGTTCCGCATCCTCGGGCGTGCCGATTCCTATAGCAGAA
 
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JMSF037F23+           GCATTTTTCAGTAAAATATTTTTGCTGTCACTAAAAAGTTTGGTTGCTTGAACCAAAGCG
JMFS021D03+           GCATTTTTCAGTAAAATATTTTTGCTGTCACTAAAAAGTTTGGTTGCTTGAACCAAAGCG
JMFS122A12+           GCATTTTTCAGTAAAATATTTTTGCTGTCACTAAAAAGTTTGGTTGCTTGAACCAAAGCG
JMSF034N05+           GCATTTTTCAGTAAAATATTTTTGCTGTCACTAAAAAGTTTGGTTGCTTGAACCAAAGCG
                      ____________________________________________________________
consensus             GCATTTTTCAGTAAAATATTTTTGCTGTCACTAAAAAGTTTGGTTGCTTGAACCAAAGCG
 
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JMSF037F23+           CCCCCGTCCATACGCAATTCATTCTTGCAGAAATCAGTGAATCGAACTTCCAAAGGGTCT
JMFS021D03+           CCCCCGTCCATACGCAATTCATTCTTGCAGAAATCAGTGAATCGAACTTCCAAAGGGTCT
JMFS122A12+           CCCCCGTCCATACGCAATTCATTCTTGCAGAAATCAGTGAATCGAACTTCCAAAGGGTCT
JMSF034N05+           CCCCCGTCCATACGCAATTCATTCTTGCAGAAATCAGTGAATCGAACTTCCAAAGGGTCT
                      ____________________________________________________________
consensus             CCCCCGTCCATACGCAATTCATTCTTGCAGAAATCAGTGAATCGAACTTCCAAAGGGTCT
 
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JMSF037F23+           GCACCTCCCATGCAGGTTCCATCTCCAGAATGACCGCAAGGCTCGCTAGGTTGCTCCATT
JMFS021D03+           GCACCTCCCATGCAGGTTCCATCTCCAGAATGACCGCAAGGCTCGCTAGGTTGCTCCATT
JMFS122A12+           GCACCTCCCATGCAGGTTCCATCTCCAGAATGACCGCAAGGCTCGCTAGGTTGCTCCATT
JMSF034N05+           GCACCTCCCATGCAGGTTCCATCTCCAGAATGACCGCAAGGCTCGCTAGGTTGCTCCATT
JMSF007A08+                                                      CGCTAGGTTGCTCCATT
                      ____________________________________________________________
consensus             GCACCTCCCATGCAGGTTCCATCTCCAGAATGACCGCAAGGCTCGCTAGGTTGCTCCATT
 
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JMSF037F23+           TATACTCCAAACAGCTAGTAGATCGAGACAAGAAGAGAAAACCCTAGCTCTTTAACAACC
JMFS021D03+           TATACTCCAAACAGCTAGTAGATCGAGACAAGAAGAGAAAACCCTAGCTCTTTAACAACC
JMFS122A12+           TATACTCCAAACAGCTAGTAGATCGAGACAAGAAGAGAAAACCCTAGCTCTTTAACAACC
JMSF034N05+           TATACTCCAAACAGCTAGTAGATCGAGACAAGAAGAGAAAACCCTAGCTCTTTAACAACC
JMSF007A08+           TATACTCCAAACAGCTAGTAGATCGAGACAAGAAGAGAAAACCCTAGCTCTTTAACAACC
                      ____________________________________________________________
consensus             TATACTCCAAACAGCTAGTAGATCGAGACAAGAAGAGAAAACCCTAGCTCTTTAACAACC
 
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JMSF037F23+           AT                                                          
JMFS021D03+           ATGAGAGGAAGAATTAGATCGAATTCGCATTATAGGCGCGCTCAATTTAGTCCCACCCTG
JMFS122A12+           ATGAGAGGAAGAATTAGATCGAATTCGCATTATAGGCGCGCTCAATTTAGTCCCACCCTG
JMSF034N05+           ATGAGAGGAAGAATTAGATCGAATTCGCATTATAGGCGCGCTCAATTTAGTCCCACCCTG
JMSF007A08+           ATGAGAGGAAGAATTAGATCGAATTCGCATCATAGGCGCGCTCAATTTAGTCCCACCCTG
                      ____________________________________________________________
consensus             ATGAGAGGAAGAATTAGATCGAATTCGCATTATAGGCGCGCTCAATTTAGTCCCACCCTG
 
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JMFS021D03+           AGATTGCTGTGTT                                               
JMFS122A12+           AGATTGCTGTGTT                                               
JMSF034N05+           AGATTGCTGTGTTTTCTCTCTACTGT                                  
JMSF007A08+           AGATTGCTGTGTTTTCTCTCTACTGTTCTGATCTCCCGAATTCTTACTCTTTCCTAATTG
                      ____________________________________________________________
consensus             AGATTGCTGTGTTTTCTCTCTACTGTTCTGATCTCCCGAATTCTTACTCTTTCCTAATTG
 
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JMSF007A08+           CACTTTTTTCTTTTTCTTTTTTCCTAATCTTACTCTTTCCTAATTGCACTTCACCCCCAC
                      ____________________________________________________________
consensus             CACTTTTTTCTTTTTCTTTTTTCCTAATCTTACTCTTTCCTAATTGCACTTCACCCCCAC