| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN043J23 | Sequence | 596 | 007751 (6) | ref|XP_009761327.1| | 1e-75 | PREDICTED: serine/threonine-protein kinase STN8, chloroplastic [Nicotiana sylve | |||||
| JMFS006A05 | Sequence | 590 | 007751 (6) | ref|XP_011095153.1| | 1e-97 | PREDICTED: serine/threonine-protein kinase STN8, chloroplastic [Sesamum indicum | |||||
| JMSF005I13 | Sequence | 423 | 007751 (6) | ref|XP_009761327.1| | 2e-33 | PREDICTED: serine/threonine-protein kinase STN8, chloroplastic [Nicotiana sylve | 322 | 002760 (2) | |||
| JMSF037I13 | Sequence | 633 | 007751 (6) | ref|XP_010653332.1| | 9e-62 | PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X2 [Viti | 737 | 022605 | emb|CBI18022.3| | 5e-133 | unnamed protein product [Vitis vinifera] |
| JMSF052K10 | Sequence | 658 | 007751 (6) | ref|XP_010653332.1| | 1e-70 | PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X2 [Viti | 958 | 007751 (6) | ref|XP_011095153.1| | 1e-136 | PREDICTED: serine/threonine-protein kinase STN8, chloroplastic [Sesamum indicum |
This contig is upended
. : . : . : . : . : . :
rJMSF052K10- CGCGGCGGCTTGATCCCCGCCTAGC
____________________________________________________________
consensus CGCGGCGGCTTGATCCCCGCCTAGC
. : . : . : . : . : . :
rJMSF052K10- AAGAAATAAGGATGCCTTAGAGCAGCAGAAGCAGAAAGGCGGTTGCGCCTGAGGGAGCCT
____________________________________________________________
consensus AAGAAATAAGGATGCCTTAGAGCAGCAGAAGCAGAAAGGCGGTTGCGCCTGAGGGAGCCT
. : . : . : . : . : . :
rJMSF052K10- CGATCCGAGATGAGTTTCGTAGCGAGATCCCAGCCTCTCCCGGAGTCAAGATCGAGAATG
____________________________________________________________
consensus CGATCCGAGATGAGTTTCGTAGCGAGATCCCAGCCTCTCCCGGAGTCAAGATCGAGAATG
. : . : . : . : . : . :
rJMSF052K10- CTGAAATCGAACCTCGATCTGCACCTCTCCCGCCACGTATTCAAGTCGTACCCGGCCTGT
____________________________________________________________
consensus CTGAAATCGAACCTCGATCTGCACCTCTCCCGCCACGTATTCAAGTCGTACCCGGCCTGT
. : . : . : . : . : . :
rJMSF052K10- TTCAGCTCCAGATTGAAGTTCTTCAGGCCTGCTGTGGACCTCAGGCCCGGAATCGCCATT
____________________________________________________________
consensus TTCAGCTCCAGATTGAAGTTCTTCAGGCCTGCTGTGGACCTCAGGCCCGGAATCGCCATT
. : . : . : . : . : . :
rJMSF052K10- TGCAGCAGCACTGCCATAAAATCGGGGAAAGCAGTGCAGCAATGGGCTCCGGGGGAGGGT
____________________________________________________________
consensus TGCAGCAGCACTGCCATAAAATCGGGGAAAGCAGTGCAGCAATGGGCTCCGGGGGAGGGT
. : . : . : . : . : . :
rJMSF052K10- TCGGAGTCTCTTCGGGCATTACATAGAGCTCGGGAGGGCAGTAATCGGGATCAAGAAGGC
____________________________________________________________
consensus TCGGAGTCTCTTCGGGCATTACATAGAGCTCGGGAGGGCAGTAATCGGGATCAAGAAGGC
. : . : . : . : . : . :
rJMSF052K10- CCCGGTTTGGGACATAGTTTTTCCCAATCCTGAGATCTGTGGCAGCTCCAAAATCTATCA
____________________________________________________________
consensus CCCGGTTTGGGACATAGTTTTTCCCAATCCTGAGATCTGTGGCAGCTCCAAAATCTATCA
. : . : . : . : . : . :
rJMSF052K10- GCTTTATCTGCACCTTCTTTGTCACTACTAAATTCGATGGCTTCACATCGCGGTGGACTA
____________________________________________________________
consensus GCTTTATCTGCACCTTCTTTGTCACTACTAAATTCGATGGCTTCACATCGCGGTGGACTA
. : . : . : . : . : . :
rJMSF052K10- TCCCCGAATCATGAATCTTTTTCAGGGACGCGATAATCTGCCTCATTATCTGCTTGATTA
____________________________________________________________
consensus TCCCCGAATCATGAATCTTTTTCAGGGACGCGATAATCTGCCTCATTATCTGCTTGATTA
. : . : . : . : . : . :
rJMSF052K10- TAAGCGCATTTCGCTCGATGGAATCCATCCCTTGCAACACACGGCCAAACATTGCAGACT
JMFS006A05+ CCAAACATTGCAGACT
____________________________________________________________
consensus TAAGCGCATTTCGCTCGATGGAATCCATCCCTTGCAACACACGGCCAAACATTGCAGACT
. : . : . : . : . : . :
rJMSF052K10- CTAAGTTCAAAGGGAAGGCGCGGTCCTTCATGTAGTCAGCCAGGTCTCGATCGCCCTCAA
JMFS006A05+ CTAAGTTCAAAGGGAAGGCGCGGTCCTTCATGTAGTCAGCCAGGTCTCGATCGCCCTCAA
____________________________________________________________
consensus CTAAGTTCAAAGGGAAGGCGCGGTCCTTCATGTAGTCAGCCAGGTCTCGATCGCCCTCAA
. : . : . : . : . : . :
rJMSF052K10- ACTTCCAGACTAGCCATTTCTCCCCCTTTGTGAACTGTGAATTGGTTTTCTCGGCAGTGA
JMFS006A05+ ACTTCCAGACTAGCCATTTCTCCCCCTTTGTGAACTGTGAATTGGTTTTCTCGGCAGTGA
____________________________________________________________
consensus ACTTCCAGACTAGCCATTTCTCCCCCTTTGTGAACTGTGAATTGGTTTTCTCGGCAGTGA
. : . : . : . : . : . :
rJMSF052K10- AGCTTCCGAGGAACTTGGCACAGGTCTCCGGTGCAGCCCGAGACAGTCTGTAATTGAACC
JMFS006A05+ AGCTTCCGAGGAACTTGGCACAGGTCTCCGGTGCAGCCCGAGACAGTCTGTAATTGAACC
JMFN043J23+ CGAGGAACTTGGCACAGGTCTCCGGTGCAGCCCGAGACAGTCTGTAATTGAACC
JMSF052K10+ TCCGGTGCAGCCCGAGACAGTCTGTAATTGAACC
____________________________________________________________
consensus AGCTTCCGAGGAACTTGGCACAGGTCTCCGGTGCAGCCCGAGACAGTCTGTAATTGAACC
. : . : . : . : . : . :
rJMSF052K10- ATTCCTCGAATTCGCCACACTCGACGGCGCCCTGGACACCGAGCTTTACCTTCTTAAGAA
JMFS006A05+ ATTCCTCGAATTCGCCACACTCGACGGCGCCCTGGACACCGAGCTTTACCTTCTTAAGAA
JMFN043J23+ ATTCCTCGAATTCGCCACACTCGACGGCGCCCTGGACACCGAGCTTTACCTTCTTAAGAA
JMSF052K10+ ATTCCTCGANTTCGCCACACTCGACGGCGCCCTGGACACCGAGCTTTACCTTCTTAAGAA
JMSF037I13+ TTCGCCACACTCGACGGCGCCCTGGACACCGAGCTTTACCTTCTTAAGAA
____________________________________________________________
consensus ATTCCTCGAATTCGCCACACTCGACGGCGCCCTGGACACCGAGCTTTACCTTCTTAAGAA
. : . : . : . : . : . :
rJMSF052K10- TGACCTTTTCTTTGAACCTAGGATCAGANGCCAGGGCTCTCTGGCTTCTACTTTTCTTGA
JMFS006A05+ TGACCTTTTCTTTGAACCTAGGATCAGAGGCCAGGGCTCTCTGGCTTCTACTTTTCTTGA
JMFN043J23+ TGACCTTTTCTTTGAACCTAGGATCAGAGGCCAGGGCTCTCTGGCTTCTACTTTTCTTGA
JMSF052K10+ TGACCTTTTCTTTGAACCTAGGATCAGAGGCCAGGGCTCTCTGGCTTCTACTTTTCTTGA
JMSF037I13+ TGACCTTTTCTTTGAACCTAGGATCAGAGGCCAGGGCTCTCTGGCTTCTACTTTTCTTGA
____________________________________________________________
consensus TGACCTTTTCTTTGAACCTAGGATCAGAGGCCAGGGCTCTCTGGCTTCTACTTTTCTTGA
. : . : . : . : . : . :
rJMSF052K10- TTCTTTCATCAATTGTGACATTCTTGGGCACAA
JMFS006A05+ TTCTTTCATCAATTGTGACATTCTTGGGCACAACCACACCAGAATAGACCACACCAAATG
JMFN043J23+ TTCTTTCATCAATTGTGACATTCTTGGGCACAACCACACCAGAATAGACCACACCAAATG
JMSF052K10+ TTCTTTCATCAATTGTGACATTCTTGGGCACAACCACACCAGAATAGACCACACCAAATG
JMSF037I13+ TTCTTTCATCAATTGTGACATTCTTGGGCACAACCACACCAGAATAGACCACACCAAATG
____________________________________________________________
consensus TTCTTTCATCAATTGTGACATTCTTGGGCACAACCACACCAGAATAGACCACACCAAATG
. : . : . : . : . : . :
JMFS006A05+ ACCCTTCTCCTAGTTTATCACCAACCAAGAAATCTGTCATCTTCAAGCTCCTCCTCCCAC
JMFN043J23+ ACCCTTCTCCTAGTTTATCACCAACCAAGAAATCTGTCATCTTCAAGCTCCTCCTCCCAC
JMSF052K10+ ACCCTTCTCCTAGTTTATCACCAACCAAGAAATCTGTCATCTTCAAGCTCCTCCTCCCAC
JMSF037I13+ ACCCTTCTCCTAGTTTATCACCAACCAAGAAATCTGTCATCTTCAAGCTCCTCCTCCCAC
JMSF005I13+ CAC
____________________________________________________________
consensus ACCCTTCTCCTAGTTTATCACCAACCAAGAAATCTGTCATCTTCAAGCTCCTCCTCCCAC
. : . : . : . : . : . :
JMFS006A05+ TCAAACTGTCCAATCCAACTTGCAGAGGGGCAAGAATGTATGCATCAATGGCGCCGATGA
JMFN043J23+ TCAAACTGTCCAATCCAACTTGCAGAGGGGCAAGAATGTATGCATCAATGGCGCCGATGA
JMSF052K10+ TCAAACTGTCCAATCCAACTTGCAGAGGGGCAAGAATGTATGCATCAATGGCGCCGATGA
JMSF037I13+ TCAAACTGTCCAATCCAACTTGCAGAGGGGCAAGAATGTATGCATCAATGGCGCCGATGA
JMSF005I13+ TCAAACTGTCCAATCCAACTTGCAGAGGGGCAAGAATGTATGCATCAATGGCGCCGATGA
____________________________________________________________
consensus TCAAACTGTCCAATCCAACTTGCAGAGGGGCAAGAATGTATGCATCAATGGCGCCGATGA
. : . : . : . : . : . :
JMFS006A05+ GGACACCTGGCCTAGCAGTCAAGTATATCCAACTCAGTCCTGCAAAAACCAGCAAACCCC
JMFN043J23+ GGACACCTGGCCTAGCAGTCAAGTATATCCAACTCAGTCCTGCAAAAACCAGCAAACCCC
JMSF052K10+ GGACACCTGGCCTAGCAGTCAAGTATATCCAACTCAGTCCTGCAAAAACCAGCAAACCCC
JMSF037I13+ GGACACCTGGCCTAGCAGTCAAGTATATCCAACTCAGTCCTGCAAAAACCAGCAAACCCC
JMSF005I13+ GGACACCTGGCCTAGCAGTCAAGTATATCCAACTCAGTCCTGCAAAAACCAGCAAACCCC
____________________________________________________________
consensus GGACACCTGGCCTAGCAGTCAAGTATATCCAACTCAGTCCTGCAAAAACCAGCAAACCCC
. : . : . : . : . : . :
JMFS006A05+ ATCTCTGCCCTTCTGGC
JMFN043J23+ ATCTCTGCCCTTCTGGCAGCTCCTCAGCCACCCTCTGAAACTGGGTGTACCCGGATTCGA
JMSF052K10+ ATCTCTGCCCTTCTGGCAGCTCCTCAGCCACCCTCTGAAACTGGGTGTACCCGGATTCGA
JMSF037I13+ ATCTCTGCCCTTCTGGCAGCTCCTCAGCCACCCTCTGAAACTGGGTGTACCCGGATTCGA
JMSF005I13+ ATCTCTGCCCTTCTGGCAGCTCCTCAGCCACCCTCTGAAACTGGGTGTACCCGGATTCGA
____________________________________________________________
consensus ATCTCTGCCCTTCTGGCAGCTCCTCAGCCACCCTCTGAAACTGGGTGTACCCGGATTCGA
. : . : . : . : . : . :
JMFN043J23+ ACCCGGGGAATTGGGACAAGGCAATGTCTAGATATGAAGAACTGCCATCAAAGAATGCAT
JMSF052K10+ ACCCGGGGAATTGGGACAAGGCAATGTCTAGATATGAAGAACTGCCATCAAAGAATGCAT
JMSF037I13+ ACCCGGGGAATTGGGACAAGGCAATGTCTAGATATGAAGAACTGCCATCAAAGAATGCAT
JMSF005I13+ ACCCGGGGAATTGGGACAAGGCAATGTCTAGATATGAAGAACTGCCATCAAAGAATGCAT
____________________________________________________________
consensus ACCCGGGGAATTGGGACAAGGCAATGTCTAGATATGAAGAACTGCCATCAAAGAATGCAT
. : . : . : . : . : . :
JMFN043J23+ TGAGGCACAAGGTTTTCCTCTTGGAATGGTGGGATAAGGGGAGGAGAAGGGTGCTTAGTG
JMSF052K10+ TGAGGCACAAGGTTTTCCTCTTGGAATGGTGGGATAAGGGGAGGAGAAGGGTGCTTAGTG
JMSF037I13+ TGAGGCACAAGGTTTTCCTCTTGGAATGGTGGGATAAGGGGAGGAGAAGGGTGCTTAGTG
JMSF005I13+ TGAGGCACAAGGTTTTCCTCTTGGAATGGTGGGATAAGGGGAGGAGAAGGGTGCTTAGTG
____________________________________________________________
consensus TGAGGCACAAGGTTTTCCTCTTGGAATGGTGGGATAAGGGGAGGAGAAGGGTGCTTAGTG
. : . : . : . : . : . :
JMFN043J23+ TG
JMSF052K10+ TGGGTTTTGAAGGGGAGAAGCAAATCAGTTTAGGGCTTTTTTGGTTAAATGGTGTGGCAG
JMSF037I13+ TGGGTTTTGAAGGGGAGAAGCAAATCAGTTTAGGGCTTTTTTGGTTAAATGGTGTGGCAG
JMSF005I13+ TGGGTTTTGAAGGGGAGAAGCAAATCAGTTTAGGGCTTTTTTGGTTAAATGGTGTGGCAG
____________________________________________________________
consensus TGGGTTTTGAAGGGGAGAAGCAAATCAGTTTAGGGCTTTTTTGGTTAAATGGTGTGGCAG
. : . : . : . : . : . :
JMSF052K10+ CAGTTGGGGAGAGCAAGGAAG
JMSF037I13+ CAGTTGGGGAGAGCAAGGAAGCCATGGAAGAATCTTGATCTT
JMSF005I13+ CAGTTGGGGAGAGCAAGGAAGCCATGGAAGAATCTTGATCTTACAGCAATTAGCTCCTCC
____________________________________________________________
consensus CAGTTGGGGAGAGCAAGGAAGCCATGGAAGAATCTTGATCTTACAGCAATTAGCTCCTCC