Contig 007744:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004I09Sequence426007744 (2)ref|XP_009628384.1|2e-44PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3 [Nicotiana tomentos
JMSF017A11Sequence656007744 (2)emb|CDP05968.1|9e-09unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF017A11-                                         ATGTATGTTGTTACAAAAAACCAGAATAG
                      ____________________________________________________________
consensus                                            ATGTATGTTGTTACAAAAAACCAGAATAG
 
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rJMSF017A11-          CAGAATATCCAATGTCTAAACATATGAGCAAGAATTAAATGTAGTGCAGCTGAATGACTA
                      ____________________________________________________________
consensus             CAGAATATCCAATGTCTAAACATATGAGCAAGAATTAAATGTAGTGCAGCTGAATGACTA
 
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rJMSF017A11-          ATTGCAATATACTCTATCAATTACAAGAGGGATCTGATGAAGTTGCAAAGGTCCACAAAA
                      ____________________________________________________________
consensus             ATTGCAATATACTCTATCAATTACAAGAGGGATCTGATGAAGTTGCAAAGGTCCACAAAA
 
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rJMSF017A11-          TCATTCATAGTGTCCAGAACAGAAAACACTCATCCTATGTTGGCAAATGATAGGAAATTG
                      ____________________________________________________________
consensus             TCATTCATAGTGTCCAGAACAGAAAACACTCATCCTATGTTGGCAAATGATAGGAAATTG
 
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rJMSF017A11-          TAGCATCATGCACCATCCCTAGCAAATTTTGCTTCAAACTCCATCTGGGAGCTATCTGAA
                      ____________________________________________________________
consensus             TAGCATCATGCACCATCCCTAGCAAATTTTGCTTCAAACTCCATCTGGGAGCTATCTGAA
 
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rJMSF017A11-          CCATTCTTACCTGCACTTACTGAAGGGGCAGCAATGGGTTGAGGTCCTTGAGGAGTTTGG
                      ____________________________________________________________
consensus             CCATTCTTACCTGCACTTACTGAAGGGGCAGCAATGGGTTGAGGTCCTTGAGGAGTTTGG
 
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rJMSF017A11-          ATCATTGGTCTCACTGTGACTGAAAGAGGAGGAGGACCAGGTTGGGGGACTTGGGGAACT
JMSF004I09+                                                                 GGAACT
                      ____________________________________________________________
consensus             ATCATTGGTCTCACTGTGACTGAAAGAGGAGGAGGACCAGGTTGGGGGACTTGGGGAACT
 
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rJMSF017A11-          GTTCTTACAATAGTTGGTTCACTTTGATGTGTGACCGGAGCAGGCACTTTACTGGGAGTT
JMSF004I09+           GTTCTTACAATAGTTGGTTCACTTTGATGTGTGACCGGAGCAGGCACTTTACTGGGAGTT
                      ____________________________________________________________
consensus             GTTCTTACAATAGTTGGTTCACTTTGATGTGTGACCGGAGCAGGCACTTTACTGGGAGTT
 
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rJMSF017A11-          TTAGCTGCTTTTGCTCG                                           
JMSF004I09+           TTAGCTGCTTTTGCTCGGAGAGCATATCGTCTATTCTGGAACCAATTCCATACTTGTTTC
                      ____________________________________________________________
consensus             TTAGCTGCTTTTGCTCGGAGAGCATATCGTCTATTCTGGAACCAATTCCATACTTGTTTC
 
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JMSF004I09+           ATCTGAACCACAACCTTTCCAGATCTCTCGGCTGAAGCACTAAACTTCTCAGCAAGAGAC
                      ____________________________________________________________
consensus             ATCTGAACCACAACCTTTCCAGATCTCTCGGCTGAAGCACTAAACTTCTCAGCAAGAGAC
 
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JMSF004I09+           ACAAGAACGTCACGAGTAGGCACTTGAGTATTGTGTGCTTGCAAAATAGCCTCCATCTCA
                      ____________________________________________________________
consensus             ACAAGAACGTCACGAGTAGGCACTTGAGTATTGTGTGCTTGCAAAATAGCCTCCATCTCA
 
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JMSF004I09+           GCAACCTCGGTAGGGTTGAATCGGAACGAAGGACCTCCGTTGCTCGGCGGTCTACCCATC
                      ____________________________________________________________
consensus             GCAACCTCGGTAGGGTTGAATCGGAACGAAGGACCTCCGTTGCTCGGCGGTCTACCCATC
 
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JMSF004I09+           GGCTCCGGCCTAGAGAGAGAGAGAGAAGTGCAGAAATTTGAGACAGTAAGCGAAGGTGGG
                      ____________________________________________________________
consensus             GGCTCCGGCCTAGAGAGAGAGAGAGAAGTGCAGAAATTTGAGACAGTAAGCGAAGGTGGG
 
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JMSF004I09+           AAGCGGTTTTGTTGGATCAGACTTCAAATTTTCGTTTCTCGACTGCTGATGTCGTTCGTA
                      ____________________________________________________________
consensus             AAGCGGTTTTGTTGGATCAGACTTCAAATTTTCGTTTCTCGACTGCTGATGTCGTTCGTA