Contig 007740:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003D18Sequence308007740 (3)470013880 (2)ref|XP_002266433.1|8e-23PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Vitis vinifera]
JMSF004H03Sequence356007740 (3)ref|XP_009613894.1|1e-04PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis]306013880 (2)
JMSF038O08Sequence695007740 (3)ref|XP_009613894.1|2e-14PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis]920021546emb|CBI25594.3|1e-80unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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JMSF038O08+           CAGGTGATGGAGATTCAATACCCCCATGGGATGGAGTGCTAAATTGAGTGGACACAGCAC
                      ____________________________________________________________
consensus             CAGGTGATGGAGATTCAATACCCCCATGGGATGGAGTGCTAAATTGAGTGGACACAGCAC
 
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JMSF038O08+           AAATCAGTGACCCATCATCATCCCTTGTACTAGCTGTTTCAGAGTTATCCGCATTTTCCA
                      ____________________________________________________________
consensus             AAATCAGTGACCCATCATCATCCCTTGTACTAGCTGTTTCAGAGTTATCCGCATTTTCCA
 
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JMSF038O08+           TTCTATATAGAGAGATTGGAAAGGGTTGATCCCCTGGGGCAGTATGAGTAGTTTCACTAC
                      ____________________________________________________________
consensus             TTCTATATAGAGAGATTGGAAAGGGTTGATCCCCTGGGGCAGTATGAGTAGTTTCACTAC
 
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JMSF038O08+           GAATACTATTGGGAGCTACTTCCTTATTCTCAGAAAAGCTTCGTCCTGTATCACTGGCAT
                      ____________________________________________________________
consensus             GAATACTATTGGGAGCTACTTCCTTATTCTCAGAAAAGCTTCGTCCTGTATCACTGGCAT
 
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JMSF038O08+           TGACATTGCTTGGACCATCTACCACATTGCCAGCAGATGAAACTCCACTTTCAATTTTAG
                      ____________________________________________________________
consensus             TGACATTGCTTGGACCATCTACCACATTGCCAGCAGATGAAACTCCACTTTCAATTTTAG
 
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JMSF004H03+                                                 TTAAGCTTTTTTGGCCTAATGT
JMSF038O08+           AGCAAGTAAAGGAAGCACCAGAACGCCTCCTTGGGGCCTTAAGCTTTTTTGGCCTAATGT
                      ____________________________________________________________
consensus             AGCAAGTAAAGGAAGCACCAGAACGCCTCCTTGGGGCCTTAAGCTTTTTTGGCCTAATGT
 
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JMSF004H03+           GTTTTGCAGAATTGACCAGCAAATGATCTTCTATCTGATCATGGGGCGAGTCGGAAGGAG
JMSF038O08+           GTTTTGCAGAATTGACCAGCAAATGATCTTCTATCTGATCATGGGGCGAGTCGGAAGGAG
JMSF003D18+                                                                 AAGGAG
                      ____________________________________________________________
consensus             GTTTTGCAGAATTGACCAGCAAATGATCTTCTATCTGATCATGGGGCGAGTCGGAAGGAG
 
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JMSF004H03+           AAGCACCGCAGATTAAAAGAGAAGAGAGGGTTCGTTTGACGCTGCGGTTGCGGGAGGGGC
JMSF038O08+           AAGCACCGCAGATTAAAAGAGAAGAGAGGGTTCGTTTGACGCTGCGGTTGCGGGAGGGGC
JMSF003D18+           AAGCACCGCAGATTAAAAGAGAAGAGAGGGTTCGTTTGACGCTGCGGTTGCGGGAGGGGC
                      ____________________________________________________________
consensus             AAGCACCGCAGATTAAAAGAGAAGAGAGGGTTCGTTTGACGCTGCGGTTGCGGGAGGGGC
 
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JMSF004H03+           GATGGGGTCGCGAACCCAGACGGCTACCGCCGGAACCCATCGGACCCAAGAAGCCCCTCC
JMSF038O08+           GATGGGGTCGCGAACCCAGACGGCTACCGCCGGAACCCATCGGACCCAAGAAGCCCCTCC
JMSF003D18+           GATGGGGTCGCGAACCCAGACGGCTACCGCCGGAACCCATCGGACCCAAGAAGCCCCTCC
                      ____________________________________________________________
consensus             GATGGGGTCGCGAACCCAGACGGCTACCGCCGGAACCCATCGGACCCAAGAAGCCCCTCC
 
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JMSF004H03+           TCCGTTTCCGTGATCTCTTCCTCTTCCTTCAAGGGAGAGCGATTGGTGGGAGAGGTGAAG
JMSF038O08+           TCCGTTTCCGTGATCTCTTCCTCTTCCTTCAAGGGAGAGCGATTGGTGGGAGAGGTGAAG
JMSF003D18+           TCCGTTTCCGTGATCTCTTCCTCTTCCTTCAAGGGAGAGCGATTGGTGGGAGAGGTGAAG
                      ____________________________________________________________
consensus             TCCGTTTCCGTGATCTCTTCCTCTTCCTTCAAGGGAGAGCGATTGGTGGGAGAGGTGAAG
 
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JMSF004H03+           GGGAAGAGGAAAGGAATGGTGATTATGTGAAAATGAGAGAGAGTGCCGCGTGGTGTGAAC
JMSF038O08+           GGGAAGAGGAAAGGAATGGTGATTATGTGAAAATGAGAGAGAGTGCCGCGTGGTGTGAAC
JMSF003D18+           GGGAAGAGGAAAGGAATGGTGATTATGTGAAAATGAGAGAGAGTGCCGCGTGGTGTGAAC
                      ____________________________________________________________
consensus             GGGAAGAGGAAAGGAATGGTGATTATGTGAAAATGAGAGAGAGTGCCGCGTGGTGTGAAC
 
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JMSF004H03+           CACACAGCTCACAGGTGAGGTGAGATGTCGCCC                           
JMSF038O08+           CACACAGCTCACAGGTGAGGTGAGATGTCGCCC                           
JMSF003D18+           CACACAGCTCACAGGTGAGGTGAGATGTCGCCCAGTGAATCAGCTGCTTTTGCGTTCCTC
                      ____________________________________________________________
consensus             CACACAGCTCACAGGTGAGGTGAGATGTCGCCCAGTGAATCAGCTGCTTTTGCGTTCCTC