Contig 007731:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L10-                                                              GTCGCATC
                      ____________________________________________________________
consensus                                                                 GTCGCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O24-                    GTATTAAATTTCTTCACTACCAGAATCTAAAACATAATACAAAAGTAGGA
rJMSF011L10-          AGTTTCATAGGTATTAAATTTCTTCACTACCAGAATCTAAAACATAATACAAAAGTAGGA
                      ____________________________________________________________
consensus             AGTTTCATAGGTATTAAATTTCTTCACTACCAGAATCTAAAACATAATACAAAAGTAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O24-          AAATAAATGGATGCTGCAAACAAACTCACATGAATACATGATAGCATTACTTTTCTTGCT
rJMSF011L10-          AAATAAATGGATGCTGCAAACAAACTCACATGAATACATGATAGCATTACTTTTCTTGCT
                      ____________________________________________________________
consensus             AAATAAATGGATGCTGCAAACAAACTCACATGAATACATGATAGCATTACTTTTCTTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O24-          GGCTTTTATCAACAGTGCAGAAGAGGTTGGCAAGAACATGATGATTTGGATATCACGTTG
rJMSF011L10-          GGCTTTTATCAACAGTGCAGAAGAGGTTGGCAAGAACATGATGATTTGGATATCACGTTG
                      ____________________________________________________________
consensus             GGCTTTTATCAACAGTGCAGAAGAGGTTGGCAAGAACATGATGATTTGGATATCACGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O24-          GAATGCATCATCTAGGTTTAGTAACCCTAGTTGGTGCATTGATTGGCCGGCGCTGTCTGC
rJMSF011L10-          GAATGCATCATCTAGGTTTAGTAACCCTAGTTGGTGCATTGATTGGCCGGCGCTGTCTGC
                      ____________________________________________________________
consensus             GAATGCATCATCTAGGTTTAGTAACCCTAGTTGGTGCATTGATTGGCCGGCGCTGTCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O24-          TGGGCACACCATTTGATTCCGATATCAACTCTGGACTGCTTAGCTTATAGAATGTCTGCA
rJMSF011L10-          TGGGCACACCATTTGATTCCGATATCAACTCTGGACTGCTTAGCTTATAGAATGTCTGCA
                      ____________________________________________________________
consensus             TGGGCACACCATTTGATTCCGATATCAACTCTGGACTGCTTAGCTTATAGAATGTCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O24-          ATGCTGTTGTAACAAATGGGCGCACTACATTTGCTTCCATTGCCGATAGATTTTTAAGCC
rJMSF011L10-          ATGCTGTTGTAACAAATGGGCGCACTACATTTGCTTCCATTGCCGATAGATTTTTAAGCC
                      ____________________________________________________________
consensus             ATGCTGTTGTAACAAATGGGCGCACTACATTTGCTTCCATTGCCGATAGATTTTTAAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O24-          TCAATGCAGAAGTGCGCTCCTTGGATATAATCTCCAACCCAGTCCCAATCTTGTGGAATC
rJMSF011L10-          TCAATGCAGAAGTGCGCTCCTTGGATATAATCTCCAACCCAGTCCCAATCTTGTGGAATC
                      ____________________________________________________________
consensus             TCAATGCAGAAGTGCGCTCCTTGGATATAATCTCCAACCCAGTCCCAATCTTGTGGAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O24-          TTACATCCTTGATATCCTCAATTAGAGACCTCACCATATAGATATCTGGTATGTCCTCGC
rJMSF011L10-          TTACATCCTTGATATCCTCAATTAGAGACCTCACCATATAGATATCTGGTATGTCCTCGC
JMSF011L10+                                         TCACCATATAGATATCTGGTATGTCCTCGC
                      ____________________________________________________________
consensus             TTACATCCTTGATATCCTCAATTAGAGACCTCACCATATAGATATCTGGTATGTCCTCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O24-          GGGCATGATCAAATAGAATCCTCGAGATTTCAACATAATGAAATGGTAATGACTGGAACC
rJMSF011L10-          GGGCATGATCAAATAGAATCCTCGAGATTTCAACATAATGAAATGGTAATGACTGGAACC
JMSF011L10+           GGGCATGATCAAATAGAATCCTCGAGATTTCAACATAATGAAATGGTAATGACTGGAACC
                      ____________________________________________________________
consensus             GGGCATGATCAAATAGAATCCTCGAGATTTCAACATAATGAAATGGTAATGACTGGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O24-          CTTCAGAATCCCTTTCTGCTTCCAAGACCTGAGTTAACTTCTCAACTGACATCCATTCAG
rJMSF011L10-          CTTCAGAATCCCTTTCTGCTTCCAAGACCTGAGTTAACTTCTCAACTGACATCCATTCAG
JMSF011L10+           CTTCAGAATCCCTTTCTGCTTCCAAGACCTGAGTTAACTTCTCAACTGACATCCATTCAG
                      ____________________________________________________________
consensus             CTTCAGAATCCCTTTCTGCTTCCAAGACCTGAGTTAACTTCTCAACTGACATCCATTCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O24-          GAGGTCTGATAGTGCATTTCCCTCTCTTCTTCAGGGCCACTGCCAGCCACAGAGGAACCT
rJMSF011L10-          GAGGTCTGATAGTGCATTTCCCTCTCTTCTTCAGGGCCACTGCCAGCCACAGAGGAACCT
JMSF011L10+           GAGGTCTGATAGTGCATTTCCCTCTCTTCTTCAGGGCCACTGCCAGCCACAGAGGAACCT
JMSF001O24+                                                 ACTGCCAGCCACAGAGGAACCT
                      ____________________________________________________________
consensus             GAGGTCTGATAGTGCATTTCCCTCTCTTCTTCAGGGCCACTGCCAGCCACAGAGGAACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O24-          GTATGGCTATTTGGGGGCGAAAAGGGCCAAAATCTCCGCAGA                  
rJMSF011L10-          GTATGGCTATTTGGGGGCGAAAAGGGCCAAAATCTCCGCAGATCAAATTTAGGGGTTCCA
JMSF011L10+           GTATGGCTATTTGGGGGCGAAAAGGGCCAAAATCTCCGCAGATCAAATTTAGGGGTTCCA
JMSF001O24+           GTATGGCTATTTGGGGGCGAAAAGGGCCAAAATCTCCGCAGATCAAATTTAGGGGTTCCA
                      ____________________________________________________________
consensus             GTATGGCTATTTGGGGGCGAAAAGGGCCAAAATCTCCGCAGATCAAATTTAGGGGTTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L10-          TTCTCATGTTGGGCACAATTTCGACCATCTCATCCTC                       
JMSF011L10+           TTCTCATGTTGGGCACAATTTCGACCATCTCATCCTCCGCGAGAAACTCCAACTCAGCAG
JMSF001O24+           TTCTCATGTTGGGCACAATTTCGACCATCTCATCCTCCGCGAGAAACTCCAACTCAGCAG
                      ____________________________________________________________
consensus             TTCTCATGTTGGGCACAATTTCGACCATCTCATCCTCCGCGAGAAACTCCAACTCAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF011L10+           CTGAAAAGGCAGATGCCTGTGGATCGGACGGGCTGGCCATTTTTTTTATTTAAAGTGACG
JMSF001O24+           CTGAAATGGCAGATGCCTGTGGATCGGACGGGCTGGCCATTTTTTTTATTTAAAGTGACG
                      ____________________________________________________________
consensus             CTGAAATGGCAGATGCCTGTGGATCGGACGGGCTGGCCATTTTTTTTATTTAAAGTGACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF011L10+           ATACAAAGTTTTACTCTTTTGAGTGCGTTTGAAGAGAACGGA                  
JMSF001O24+           ATACAAAGTTTTACTCTTTTGAGTGCGTTTGAAGAGAACGGACTGCTGCAGTGCTGCGCA
                      ____________________________________________________________
consensus             ATACAAAGTTTTACTCTTTTGAGTGCGTTTGAAGAGAACGGACTGCTGCAGTGCTGCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001O24+           AATGGTGTGAGCGACTAGACGAGCCCTAGCTTTCGCCTTCTTTTTTTGGCGGGAAAACGC
                      ____________________________________________________________
consensus             AATGGTGTGAGCGACTAGACGAGCCCTAGCTTTCGCCTTCTTTTTTTGGCGGGAAAACGC