| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS124B02 | Sequence | 577 | 007728 (6) | ref|XP_009619067.1| | 3e-82 | PREDICTED: nucleolar protein 6 isoform X3 [Nicotiana tomentosiformis] | |||||
| JMSF001I20 | Sequence | 337 | 007728 (6) | ref|XP_009619067.1| | 3e-26 | PREDICTED: nucleolar protein 6 isoform X3 [Nicotiana tomentosiformis] | 762 | 001297 (5) | ref|XP_004232410.1| | 2e-90 | PREDICTED: nucleolar protein 6 [Solanum lycopersicum] |
| JMSF002C19 | Sequence | 372 | 007728 (6) | ref|XP_009619067.1| | 8e-41 | PREDICTED: nucleolar protein 6 isoform X3 [Nicotiana tomentosiformis] | 748 | 001297 (5) | ref|XP_004232410.1| | 6e-87 | PREDICTED: nucleolar protein 6 [Solanum lycopersicum] |
| JMSF010B09 | Sequence | 209 | 007728 (6) | emb|CDP16827.1| | 2e-14 | unnamed protein product [Coffea canephora] | 539 | 001297 (5) | ref|XP_011099619.1| | 2e-35 | PREDICTED: nucleolar protein 6 isoform X3 [Sesamum indicum] |
| JMSF019L02 | Sequence | 493 | 007728 (6) | ref|XP_009619067.1| | 2e-66 | PREDICTED: nucleolar protein 6 isoform X3 [Nicotiana tomentosiformis] | 787 | 001297 (5) | ref|XP_009777139.1| | 1e-97 | PREDICTED: nucleolar protein 6 isoform X1 [Nicotiana sylvestris] ref|XP_00977714 |
| JMSF024G01 | Sequence | 684 | 007728 (6) | ref|XP_009619067.1| | 2e-99 | PREDICTED: nucleolar protein 6 isoform X3 [Nicotiana tomentosiformis] | 670 | 001297 (5) | ref|XP_009777139.1| | 7e-75 | PREDICTED: nucleolar protein 6 isoform X1 [Nicotiana sylvestris] ref|XP_00977714 |
This contig is upended
. : . : . : . : . : . :
JMSF024G01+ ATATACTACTGTTGTATTTTGGTGTAGCCTGTAT
____________________________________________________________
consensus ATATACTACTGTTGTATTTTGGTGTAGCCTGTAT
. : . : . : . : . : . :
JMFS124B02+ GATGGATT
JMSF024G01+ AACATCTCCTTGATTCAGAGAACGAATATTGTTCCGCTCCAACCGCAGCTTTGATGGATT
____________________________________________________________
consensus AACATCTCCTTGATTCAGAGAACGAATATTGTTCCGCTCCAACCGCAGCTTTGATGGATT
. : . : . : . : . : . :
JMFS124B02+ AAACAATGATGTTGCTGTGGGAATTATCCTTACAATGAATCCAGTCTTTTCAACCAGCTT
JMSF024G01+ AAACAATGATGTTGCTGTGGGAATTATCCTTACAATGAATCCAGTCTTTTCAACCAGCTT
____________________________________________________________
consensus AAACAATGATGTTGCTGTGGGAATTATCCTTACAATGAATCCAGTCTTTTCAACCAGCTT
. : . : . : . : . : . :
JMFS124B02+ TGCAGCTGGACAGAAAACCAGTATAGGTTTCCGAGCCTCATTTTGAAAAGCAGACCACCT
JMSF024G01+ TGCAGCTGGACAGAAAACCAGTATAGGTTTCCGAGCCTCATTTTGAAAAGCAGACCACCT
JMSF019L02+ TTGAAAAGCAGACCACCT
____________________________________________________________
consensus TGCAGCTGGACAGAAAACCAGTATAGGTTTCCGAGCCTCATTTTGAAAAGCAGACCACCT
. : . : . : . : . : . :
JMFS124B02+ CAGACTATCAAATTGTGGCAAACCATCCAGATGCTTCTTGATTTTGCAAAGATAAAGGAA
JMSF024G01+ CAGACTATCAAATTGTGGCAAACCATCCAGATGCTTCTTGATTTTGCAAAGATAAAGGAA
JMSF019L02+ CAGACTATCAAATTGTGGCAAACCATCCAGATGCTTCTTGATTTTGCAAAGATAAAGGAA
____________________________________________________________
consensus CAGACTATCAAATTGTGGCAAACCATCCAGATGCTTCTTGATTTTGCAAAGATAAAGGAA
. : . : . : . : . : . :
JMFS124B02+ TCTTTTGGCATGGTACCGGTGGTTCAAGTAGTCTTTCTCATGAAAGCACTCCTTCGGCAA
JMSF024G01+ TCTTTTGGCATGGTACCGGTGGTTCAAGTAGTCTTTCTCATGAAAGCACTCCTTCGGCAA
JMSF019L02+ TCTTTTGGCATGGTACCGGTGGTTCAAGTAGTCTTTCTCATGAAAGCACTCCTTCGGCAA
JMSF002C19+ GCAA
____________________________________________________________
consensus TCTTTTGGCATGGTACCGGTGGTTCAAGTAGTCTTTCTCATGAAAGCACTCCTTCGGCAA
. : . : . : . : . : . :
JMFS124B02+ GCGAAGCAAAAGATCCACATTTATGTCTGGTTTGACAACGCATTGCATTGCATAACTACC
JMSF024G01+ GCGAAGCAAAAGATCCACATTTATGTCTGGTTTGACAACGCATTGCATTGCATAACTACC
JMSF019L02+ GCGAAGCAAAAGATCCACATTTATGTCTGGTTTGACAACGCATTGCATTGCATAACTACC
JMSF002C19+ GCGAAGCAAAAGATCCACATTTATGTCTGGTTNGACAACGCATTGCATTGCATAACTACC
____________________________________________________________
consensus GCGAAGCAAAAGATCCACATTTATGTCTGGTTTGACAACGCATTGCATTGCATAACTACC
. : . : . : . : . : . :
JMFS124B02+ ACCAATTTCTATCGACAATGGCTTCTTAAACGTAAACTCAACTTTATCAGCATTAATATC
JMSF024G01+ ACCAATTTCTATCGACAATGGCTTCTTAAACGTAAACTCAACTTTATCAGCATTAATATC
JMSF019L02+ ACCAATTTCTATCGACAATGGCTTCTTAAACGTAAACTCAACTTTATCAGCATTAATATC
JMSF002C19+ ACCAATTTCTATCGACAATGGCTTCTTAAACGTAAACTCAACTTTATCAGCATTAATATC
JMSF001I20+ TCTTAAACGTAAACTCAACTTTATCAGCATTAATATC
____________________________________________________________
consensus ACCAATTTCTATCGACAATGGCTTCTTAAACGTAAACTCAACTTTATCAGCATTAATATC
. : . : . : . : . : . :
JMFS124B02+ TCTAATGAACCCCGGTGCTAAATCAGCAGTAACCTTGTTCTCGGGGATTTTGTCGATGGC
JMSF024G01+ TCTAATGAACCCCGGTGCTAAATCAGCAGTAACCTTGTTCTCGGGGATTTTGTCGATGGC
JMSF019L02+ TCTAATGAACCCCGGTGCTAAATCAGCAGTAACCTTGTTCTCGGGGATTTTGTCGATGGC
JMSF002C19+ TCTAATGAACCCCGGTGCTAAATCAGCAGTAACCTTGTTCTCGGGGATTTTGTCGATGGC
JMSF010B09+ CTAAATCAGCAGTAACCTTGTTCTCGGGGATTTTGTCGATGGC
JMSF001I20+ TCTAATGAACCCCGGTGCTAAATCAGCAGTAACCTTGTTCTCGGGGATTTTGTCGATGGC
____________________________________________________________
consensus TCTAATGAACCCCGGTGCTAAATCAGCAGTAACCTTGTTCTCGGGGATTTTGTCGATGGC
. : . : . : . : . : . :
JMFS124B02+ CTCTTTGATGGAGGAAACCACGTCGTTGATAATTTTGGTGTTTGCCGGAGAATAGTCGAG
JMSF024G01+ CTCTTTGATGGAGGAAACCACGTCGTTGATAATTTTGGTGTTTGCCGGAGAATAGTCGAG
JMSF019L02+ CTCTTTGATGGAGGAAACCACGTCGTTGATAATTTTGGTGTTTGCCGGAGAATAGTCGAG
JMSF002C19+ CTCTTTGATGGAGGAAACCACGTCGTTGATAATTTTGGTGTTTGCCGGAGAATAGTCGAG
JMSF010B09+ CTCTTTGATGGAGGAAACCACGTCGTTGATAATTTTGGTGTTTGCCGGAGAATAGTCGAG
JMSF001I20+ CTCTTTGATGGAGGAAACCACGTCGTTGATAATTTTGGTGTTTGCCGGAGAATAGTCGAG
____________________________________________________________
consensus CTCTTTGATGGAGGAAACCACGTCGTTGATAATTTTGGTGTTTGCCGGAGAATAGTCGAG
. : . : . : . : . : . :
JMFS124B02+ CTGGACCTCCTTCAACAGCTCGGAAATCCTCAGTGTCATTGAATCCATAGTATCGGAAGC
JMSF024G01+ CTGGACCTCCTTCAACAGCTCGGAAATCCTCAGTGTCATTGAATCCATAGTATCGGAAGC
JMSF019L02+ CTGGACCTCCTTCAACAGCTCGGAAATCCTCAGTGTCATTGAATCCATAGTATCGGAAGC
JMSF002C19+ CTGGACCTCCTTCAACAGCTCGGAAATCCTCAGTGTCATTGAATCCATAGTATCGGAAGC
JMSF010B09+ CTGGACCTCCTTCAACAGCTCGGAAATCCTCAGTGTCATTGAATCCATAGTATCGGAAGC
JMSF001I20+ CTGGACCTCCTTCAACAGCTCGGAAATCCTCAGTGTCATTGAATCCATAGTATCGGAAGC
____________________________________________________________
consensus CTGGACCTCCTTCAACAGCTCGGAAATCCTCAGTGTCATTGAATCCATAGTATCGGAAGC
. : . : . : . : . : . :
JMFS124B02+ CATTGTTTCTAGCTCGGAGCTTCTAGCTC
JMSF024G01+ CATTGTTTCTAGCTCGGAGCTTCTAGCTCTTAATTGGTTAACTGCCCG
JMSF019L02+ CATTGTTTCTAGCTCGGAGCTTCTAGCTCTTAATTGGTTAACTGCCCG
JMSF002C19+ CATTGTTTCTAGCTCGGAGCTTCTAGCTCTTAATTGGTTAACTGCCCGGAGTCTAGGGTT
JMSF010B09+ CATTGTTTCTAGCTCGGAGCTTCTAGCTCTTAATTGGTTAACT
JMSF001I20+ CATTGTTTCTAGCTCGGAGCTTCTAGCTCTTAATTGGTTAACTGCCCGGAGTCTAGGGTT
____________________________________________________________
consensus CATTGTTTCTAGCTCGGAGCTTCTAGCTCTTAATTGGTTAACTGCCCGGAGTCTAGGGTT
. : . : . : . : . : . :
JMSF002C19+ TACACTT
JMSF001I20+ TACACTTGGGGTTTTTCTTAAACCCTGAATCTTTGATTTACCGGCTAAAACCTCTAATCC
____________________________________________________________
consensus TACACTTGGGGTTTTTCTTAAACCCTGAATCTTTGATTTACCGGCTAAAACCTCTAATCC