Contig 007725:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS099E05Sequence614007725 (6)ref|XP_009773895.1|2e-116PREDICTED: exportin-1-like isoform X3 [Nicotiana sylvestris]
JMFS143C03Sequence606007725 (6)ref|XP_009773895.1|2e-83PREDICTED: exportin-1-like isoform X3 [Nicotiana sylvestris]
JMFS147B05Sequence609007725 (6)ref|XP_009773895.1|6e-113PREDICTED: exportin-1-like isoform X3 [Nicotiana sylvestris]
JMFS169C12Sequence616007725 (6)ref|XP_009773895.1|2e-109PREDICTED: exportin-1-like isoform X3 [Nicotiana sylvestris]
JMSF026K24Sequence385007725 (6)ref|XP_009773895.1|7e-26PREDICTED: exportin-1-like isoform X3 [Nicotiana sylvestris]731012640 (2)gb|KDO50607.1|1e-47hypothetical protein CISIN_1g0367702mg, partial [Citrus sinensis]
JMSF037N12Sequence637007725 (6)ref|XP_009773895.1|2e-115PREDICTED: exportin-1-like isoform X3 [Nicotiana sylvestris]744012640 (2)gb|KDO50607.1|4e-54hypothetical protein CISIN_1g0367702mg, partial [Citrus sinensis]

Alignment

This contig is upended


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JMFS099E05+                          TTTGATCTTCAGTTGTGTCATTTCACCTCTTGAGAAATCAAATAC
JMFS147B05+                                          GTCATTTCACCTCTTGAGAAATCAAATAC
JMSF037N12+                            TGATCTTCAGTTGTGTCATTTCACCTCTTGAGAAATCAAATAC
JMFS169C12+                                                       TTGAGAAATCAAATAC
                      ____________________________________________________________
consensus                            TTTGATCTTCAGTTGTGTCATTTCACCTCTTGAGAAATCAAATAC
 
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JMFS099E05+           CTCCTCACTGAGAAGCTTCAATATAGCCATGCAATTTTCACAAATGGTTTCACTCGTCCT
JMFS147B05+           CTCCTCACTGAGAAGCTTCAATATAGCCATGCAATTTTCACAAATGGTTTCACTCGTCCT
JMSF037N12+           CTCCTCACTGAGAAGCTTCAATATAGCCATGCAATTTTCACAAATGGTTTCACTCGTCCT
JMFS169C12+           CTCCTCACTGAGAAGCTTCAATATAGCCATGCAATTTTCACAAATGGTTTCACTCGTCCT
                      ____________________________________________________________
consensus             CTCCTCACTGAGAAGCTTCAATATAGCCATGCAATTTTCACAAATGGTTTCACTCGTCCT
 
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JMFS099E05+           GGCTGCTGCAACTAAATCAGGAATGAAGTTTTTCCATCTGGCTGGCCATTCGTGTTTCAA
JMFS147B05+           GGCTGCTGCAACTAAATCAGGAATGAAGTTTTTCCATCTGGCTGGCCATTCGTGTTTCAA
JMSF037N12+           GGCTGCTGCAACTAAATCAGGAATGAAGTTTTTCCATCTGGCTGGCCATTCGTGTTTCAA
JMFS143C03+                                       TTTTTCCATCTGGCTGGCCATTCGTGTTTCAA
JMFS169C12+           GGCTGCTGCAACTAAATCAGGAATGAAGTTTTTCCATCTGGCTGGCCATTCGTGTTTCAA
                      ____________________________________________________________
consensus             GGCTGCTGCAACTAAATCAGGAATGAAGTTTTTCCATCTGGCTGGCCATTCGTGTTTCAA
 
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JMFS099E05+           GATCTGAACCAATATAATATTTAATTTGTTGATGTATAACCTCTCCCTTCGAAGAGTTGC
JMFS147B05+           GATCTGAACCAATATAATATTTAATTTGTTGATGTATAACCTCTCCCTTCGAAGAGTTGC
JMSF037N12+           GATCTGAACCAATATAATATTTAATTTGTTGATGTATAACCTCTCCCTTCGAAGAGTTGC
JMFS143C03+           GATCTGAACCAATATAATATTTAATTTGTTGATGTATAACCTCTCCCTTCGAAGAGTTGC
JMFS169C12+           GATCTGAACCAATATAATATTTAATTTGTTGATGTATAACCTCTCCCTTCGAAGAGTTGC
                      ____________________________________________________________
consensus             GATCTGAACCAATATAATATTTAATTTGTTGATGTATAACCTCTCCCTTCGAAGAGTTGC
 
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JMFS099E05+           TTCATCGCTAGAAAGCTTCACAATGAGGTCAGATATGTAGTTTTTCATCCCATCACGTTC
JMFS147B05+           TTCATCGCTAGAAAGCTTCACAATGAGGTCAGATATGTAGTTTTTCATCCCATCACGTTC
JMSF037N12+           TTCATCGCTAGAAAGCTTCACAATGAGGTCAGATATGTAGTTTTTCATCCCATCACGTTC
JMFS143C03+           TTCATCGCTAGAAAGCTTCACAATGAGGTCAGATATGTAGTTTTTCATCCCATCACGTTC
JMFS169C12+           TTCATCGCTAGAAAGCTTCACAATGAGGTCAGATATGTAGTTTTTCATCCCATCACGTTC
                      ____________________________________________________________
consensus             TTCATCGCTAGAAAGCTTCACAATGAGGTCAGATATGTAGTTTTTCATCCCATCACGTTC
 
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JMFS099E05+           CTCAGTGGGCAACGCATTCCATTTATACTTGATGACACCTTCTAGAACCTGCAATGCAAA
JMFS147B05+           CTCAGTGGGCAACGCATTCCATTTATACTTGATGACACCTTCTAGAACCTGCAATGCAAA
JMSF037N12+           CTCAGTGGGCAACGCATTCCATTTATACTTGATGACACCTTCTAGAACCTGCAATGCAAA
JMFS143C03+           CTCAGTGGGCAACGCATTCCATTTATACTTGATGACACCTTCTAGAACCTGCAATGCAAA
JMFS169C12+           CTCAGTGGGCAACGCATTCCATTTATACTTGATGACACCTTCTAGAACCTGCAATGCAAA
                      ____________________________________________________________
consensus             CTCAGTGGGCAACGCATTCCATTTATACTTGATGACACCTTCTAGAACCTGCAATGCAAA
 
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JMSF026K24+                                       GATAGAATGCGAACCANTTGAAGCCACATATC
JMFS099E05+           AAATTTGGTATTCAGATTCTGTGTGCTTGATAGAATGCGAACCACTTGAAGCCACATATC
JMFS147B05+           AAATTTGGTATTCAGATTCTGTGTGCTTGATAGAATGCGAACCACTTGAAGCCACATATC
JMSF037N12+           AAATTTGGTATTCAGATTCTGTGTGCTTGATAGAATGCGAACCACTTGAAGCCACATATC
JMFS143C03+           AAATTTGGTATTCAGATTCTGTGTGCTTGATAGAATGCGAACCACTTGAAGCCACATATC
JMFS169C12+           AAATTTGGTATTCAGATTCTGTGTGCTTGATAGAATGCGAACCACTTGAAGCCACATATC
                      ____________________________________________________________
consensus             AAATTTGGTATTCAGATTCTGTGTGCTTGATAGAATGCGAACCACTTGAAGCCACATATC
 
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JMSF026K24+           TGGGTTATTTTGTAAATCACGCAANATATGGTCGGCAGCAGCCCTCTCCTCCTTAGATCC
JMFS099E05+           TGGGTTATTTTGTAAATCACGCAAGATATGGTCGGCAGCAGCCCTCTCCTCCTTAGATCC
JMFS147B05+           TGGGTTATTTTGTAAATCACGCAAGATATGGTCGGCAGCAGCCCTCTCCTCCTTAGATCC
JMSF037N12+           TGGGTTATTTTGTAAATCACGCAAGATATGGTCGGCAGCAGCCCTCTCCTCCTTAGATCC
JMFS143C03+           TGGGTTATTTTGTAAATCACGCAAGATATGGTCGGCAGCAGCCCTCTCCTCCTTAGATCC
JMFS169C12+           TGGGTTATTTTGTAAATCACGCAAGATATGGTCGGCAGCAGCCCTCTCCTCCTTAGATCC
                      ____________________________________________________________
consensus             TGGGTTATTTTGTAAATCACGCAAGATATGGTCGGCAGCAGCCCTCTCCTCCTTAGATCC
 
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JMSF026K24+           AGTGCCATAGAAAGCATTAACAGTAGCGTCAAGCAAGGCCACGTCAATTGGCTGACTCAA
JMFS099E05+           AGTGCCATAGAAAGCATTAACAGTAGCGTCAAGCAAGGCCACGTCAATTGGCTGACTCAA
JMFS147B05+           AGTGCCATAGAAAGCATTAACAGTAGCGTCAAGCAAGGCCACGTCAATTGGCTGACTCAA
JMSF037N12+           AGTGCCATAGAAAGCATTAACAGTAGCGTCAAGCAAGGCCACGTCAATTGGCTGACTCAA
JMFS143C03+           AGTGCCATAGAAAGCATTAACAGTAGCGTCAAGCAAGGCCACGTCAATTGGCTGACTCAA
JMFS169C12+           AGTGCCATAGAAAGCATTAACAGTAGCGTCAAGCAAGGCCACGTCAATTGGCTGACTCAA
                      ____________________________________________________________
consensus             AGTGCCATAGAAAGCATTAACAGTAGCGTCAAGCAAGGCCACGTCAATTGGCTGACTCAA
 
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JMSF026K24+           ATCCCTAAGCTTCTCCGCCGCCATGG                                  
JMFS099E05+           ATCCCTAAGCTTCTCCGCCGCCATGGAAGGATCAGAGAGTGATAAACCCTTAGAGAACCG
JMFS147B05+           ATCCCTAAGCTTCTCCGCCGCCATGGAAGGATCAGAGAGTGATAAACCCTTAGAGAACCG
JMSF037N12+           ATCCCTAAGCTTCTCCGCCGCCATGGAAGGATCAGAGAGTGATAAACCCTTAGAGAACCG
JMFS143C03+           ATCCCTAAGCTTCTCCGCCGCCATGG                                  
JMFS169C12+           ATCCCTAAGCTTCTCCGCCGCCATGGAAGGATCAGAGAGTGATAAACCCTTAGAGAACCG
                      ____________________________________________________________
consensus             ATCCCTAAGCTTCTCCGCCGCCATGGAAGGATCAGAGAGTGATAAACCCTTAGAGAACCG
 
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JMFS099E05+           AAAGTCCACTTCAAGCAAACCCTAGAAAG                               
JMFS147B05+           AAAGTCCACTTCAAGCAAACCCTAGAAAGCGTACGGAAGA                    
JMSF037N12+           AAAGTCCACTTCAAGCAAACCCTAGAAAGCGTACGGAAGACGATACAGTCGTT       
JMFS169C12+           AAAGTCCACTTCAAGCAAACCCTAGAAAGCGTACGGAAGACGATACAGTCGTTGGAAGAG
                      ____________________________________________________________
consensus             AAAGTCCACTTCAAGCAAACCCTAGAAAGCGTACGGAAGACGATACAGTCGTTGGAAGAG