Contig 007713:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS102A11Sequence611007713 (2)ref|XP_009623505.1|1e-108PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit 1 [Nicoti
JMFS156A05Sequence563007713 (2)ref|XP_009623505.1|1e-89PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit 1 [Nicoti

Alignment

This contig is upended


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JMFS102A11+           CTGAGCATGACTGCTTCGCATCAGTAGAAGGAAATCATATACATTCTGACCTTCCTGCTG
                      ____________________________________________________________
consensus             CTGAGCATGACTGCTTCGCATCAGTAGAAGGAAATCATATACATTCTGACCTTCCTGCTG
 
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JMFS102A11+           ATTTAACTCAACCTTCCTTGTATCAAGAAGAATATCAAAGGAAGATCCAGTACCAACAGA
                      ____________________________________________________________
consensus             ATTTAACTCAACCTTCCTTGTATCAAGAAGAATATCAAAGGAAGATCCAGTACCAACAGA
 
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JMFS102A11+           CACATGTTTACCCCAGGAACAAGATGCCACAACACTTGATAATGAATCAACATGGCACTT
                      ____________________________________________________________
consensus             CACATGTTTACCCCAGGAACAAGATGCCACAACACTTGATAATGAATCAACATGGCACTT
 
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JMFS102A11+           TTCAGCAGCCCTCTCAAAGCATTTCCTTGGTGTAAACAAAGTGGCTTCAGCGAAAGGTAT
                      ____________________________________________________________
consensus             TTCAGCAGCCCTCTCAAAGCATTTCCTTGGTGTAAACAAAGTGGCTTCAGCGAAAGGTAT
 
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JMFS102A11+           TTGGACATTCAACGAACGAGATAATGCCTTTATCCCACCAGCATTGAAGCCAACAAGACT
JMFS156A05+                                                CCAGCATTGAAGCCAACAAGACT
                      ____________________________________________________________
consensus             TTGGACATTCAACGAACGAGATAATGCCTTTATCCCACCAGCATTGAAGCCAACAAGACT
 
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JMFS102A11+           CCCAGCACATGTCATGGTATTAGCTAATAGAAGTAGATGGTCTTTCAGAACACCTTTTGT
JMFS156A05+           CCCAGCACATGTCATGGTATTAGCTAATAGAAGTAGATGGTCTTTCAGAACACCTTTTGT
                      ____________________________________________________________
consensus             CCCAGCACATGTCATGGTATTAGCTAATAGAAGTAGATGGTCTTTCAGAACACCTTTTGT
 
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JMFS102A11+           AACCATTGTCACAGATGTTGACAGGCGCTGAACAGCTTGCTCAAAAGCACAAGAAATCCC
JMFS156A05+           AACCATTGTCACAGATGTTGACAGGCGCTGAACAGCTTGCTCAAAAGCACAAGAAATCCC
                      ____________________________________________________________
consensus             AACCATTGTCACAGATGTTGACAGGCGCTGAACAGCTTGCTCAAAAGCACAAGAAATCCC
 
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JMFS102A11+           AAGCAACTCCTGTACTTGTTTGATAGCGTATGGTATAGAACGTTTTGTGTCAATTAGATG
JMFS156A05+           AAGCAACTCCTGTACTTGTTTGATAGCGTATGGTATAGAACGTTTTGTGTCAATTAGATG
                      ____________________________________________________________
consensus             AAGCAACTCCTGTACTTGTTTGATAGCGTATGGTATAGAACGTTTTGTGTCAATTAGATG
 
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JMFS102A11+           GATAAGAGGAAGGCATGAGTCCATGACAATCCTCCAAGCATCTCCACTTTGTTTGACGGC
JMFS156A05+           GATAAGAGGAAGGCATGAGTCCATGACAATCCTCCAAGCATCTCCACTTTGTTTGACGGC
                      ____________________________________________________________
consensus             GATAAGAGGAAGGCATGAGTCCATGACAATCCTCCAAGCATCTCCACTTTGTTTGACGGC
 
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JMFS102A11+           TTCCTTCTCAAGAGTAACTTCTACAGCCAACTCACCCTGCTGATTCTTGCTTGAGTTCCT
JMFS156A05+           TTCCTTCTCAAGAGTAACTTCTACAGCCAACTCACCCTGCTGATTCTTGCTTGAGTTCCT
                      ____________________________________________________________
consensus             TTCCTTCTCAAGAGTAACTTCTACAGCCAACTCACCCTGCTGATTCTTGCTTGAGTTCCT
 
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JMFS102A11+           AATCCAAGTCA                                                 
JMFS156A05+           AATCCAAGTCATTGTCTCAGGATTACTCCAGATTATACTTGCTGAAGAGACCCTATGATC
                      ____________________________________________________________
consensus             AATCCAAGTCATTGTCTCAGGATTACTCCAGATTATACTTGCTGAAGAGACCCTATGATC
 
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JMFS156A05+           ACCTTTTATAACAGTTTCCAACAGCACTGGGCAAATTGTGTCAGCAAGAAGATGAGCAGT
                      ____________________________________________________________
consensus             ACCTTTTATAACAGTTTCCAACAGCACTGGGCAAATTGTGTCAGCAAGAAGATGAGCAGT
 
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JMFS156A05+           TTGCTCTAAGTGATCATCACTTGAATCAATTGGCCAAGAGAATCTCAAACATGGCATCTC
                      ____________________________________________________________
consensus             TTGCTCTAAGTGATCATCACTTGAATCAATTGGCCAAGAGAATCTCAAACATGGCATCTC
 
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JMFS156A05+           TCTTGATGTACTTTTGCCTTGGTTAAAACAACAAGACGAACTGACTGATAAATCAATTCT
                      ____________________________________________________________
consensus             TCTTGATGTACTTTTGCCTTGGTTAAAACAACAAGACGAACTGACTGATAAATCAATTCT