Contig 007704:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS028F03Sequence652007704 (2)ref|XP_004488845.1|2e-132PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like isoform X1
JMFS141D06Sequence633007704 (2)ref|XP_002266580.1|6e-130PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera]

Alignment

This contig is upended


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JMFS028F03+                                                                  AGTTG
                      ____________________________________________________________
consensus                                                                    AGTTG
 
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JMFS028F03+           ATAAAGCTACAATACGGATCTTTTTGTCTAGCTGACTTGCAATATATCTCATCCTGGAGA
JMFS141D06+                                      CTAGCTGACTTGCAATATATCTCATCCTGGAGA
                      ____________________________________________________________
consensus             ATAAAGCTACAATACGGATCTTTTTGTCTAGCTGACTTGCAATATATCTCATCCTGGAGA
 
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JMFS028F03+           CAATCACTTCCAAGACTGGACCACCCTGACCACCAATCAGGTGGAGCTCATCAATGATGA
JMFS141D06+           CAATCACTTCCAAGACTGGACCACCCTGACCACCAATCAGGTGGAGCTCATCAATGATGA
                      ____________________________________________________________
consensus             CAATCACTTCCAAGACTGGACCACCCTGACCACCAATCAGGTGGAGCTCATCAATGATGA
 
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JMFS028F03+           AAAGGCTGACTTGCTGTACATGTTTCCGCTGTTTCCAACGACGAGATAAAGCGTCCCATT
JMFS141D06+           AAAGGCTGACTTGCTGTACATGTTTCCGCTGTTTCCAACGACGAGATAAAGCGTCCCATT
                      ____________________________________________________________
consensus             AAAGGCTGACTTGCTGTACATGTTTCCGCTGTTTCCAACGACGAGATAAAGCGTCCCATT
 
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JMFS028F03+           TCTCAGGTGTGCTAATGACAACTTGTCCCTTCTCAAGAAGTTTAAGGTCAGTAGCTGTCT
JMFS141D06+           TCTCAGGTGTGCTAATGACAACTTGTCCCTTCTCAAGAAGTTTAAGGTCAGTAGCTGTCT
                      ____________________________________________________________
consensus             TCTCAGGTGTGCTAATGACAACTTGTCCCTTCTCAAGAAGTTTAAGGTCAGTAGCTGTCT
 
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JMFS028F03+           CCCCAGTGAGTTCAACAACTCTCATACCTAGGCCCTGACCAAATTTCTTCTTCCAATCAC
JMFS141D06+           CCCCAGTGAGTTCAACAACTCTCATACCTAGGCCCTGACCAAATTTCTTCTTCCAATCAC
                      ____________________________________________________________
consensus             CCCCAGTGAGTTCAACAACTCTCATACCTAGGCCCTGACCAAATTTCTTCTTCCAATCAC
 
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JMFS028F03+           TATAACGCTCCTTAGCAAGAGCCTCTATTGGAGCTATATACACCGCACGCATGACACTGT
JMFS141D06+           TATAACGCTCCTTAGCAAGAGCCTCTATTGGAGCTATATACACCGCACGCATGACACTGT
                      ____________________________________________________________
consensus             TATAACGCTCCTTAGCAAGAGCCTCTATTGGAGCTATATACACCGCACGCATGACACTGT
 
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JMFS028F03+           CAGATCCTTTCTGGTGATTCCTCAAAATGGCAAATTCTGCACATATGGTCTTCCCACTAC
JMFS141D06+           CAGATCCTTTCTGGTGATTCCTCAAAATGGCAAATTCTGCACATATGGTCTTCCCACTAC
                      ____________________________________________________________
consensus             CAGATCCTTTCTGGTGATTCCTCAAAATGGCAAATTCTGCACATATGGTCTTCCCACTAC
 
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JMFS028F03+           CCGTTGGTGCTGCAACCAATACATTGTCATCAGAGTTGTACAAGACAGTAAAGACCTGAG
JMFS141D06+           CCGTTGGTGCTGCAACCAATACATTGTCATCAGAGTTGTACAAGACAGTAAAGACCTGAG
                      ____________________________________________________________
consensus             CCGTTGGTGCTGCAACCAATACATTGTCATCAGAGTTGTACAAGACAGTAAAGACCTGAG
 
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JMFS028F03+           TTTGGACTGGGTTGAAATGTTTAAATTCCTGATAAAGGGTTTCATATGCAGGATTTCTCA
JMFS141D06+           TTTGGACTGGGTTGAAATGTTTAAATTCCTGATAAAGGGTTTCATATGCAGGATTTCTCA
                      ____________________________________________________________
consensus             TTTGGACTGGGTTGAAATGTTTAAATTCCTGATAAAGGGTTTCATATGCAGGATTTCTCA
 
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JMFS028F03+           GAGCAGTCACAGGAAGGGGTTGCAAGTCTAATAGCTCTGTTGGAGGAGGATATTTTTCTG
JMFS141D06+           GAGCAGTCACAGGAAGGGGTTGCAAGTCTAATAGCTCTGTTGGAGGAGGATATTTTTCTG
                      ____________________________________________________________
consensus             GAGCAGTCACAGGAAGGGGTTGCAAGTCTAATAGCTCTGTTGGAGGAGGATATTTTTCTG
 
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JMFS028F03+           GCAAAATAAGATGCCGGAAGGAAACTGGCAGAACAGTCAGAGATCCT             
JMFS141D06+           GCAAAATAAGATGCCGGAAGGAAACTGGCAGAACAGTCAGAGATCCTAACCACTTATCAG
                      ____________________________________________________________
consensus             GCAAAATAAGATGCCGGAAGGAAACTGGCAGAACAGTCAGAGATCCTAACCACTTATCAG