Contig 007701:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050B15Sequence626007701 (2)574015984gb|AJO70136.1|2e-25ABA responsive element binding factor [Nicotiana tabacum]
JMFS139E04Sequence626007701 (2)

Alignment

This contig is upended


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JMFF050B15+                                                            TGAAACTGATC
                      ____________________________________________________________
consensus                                                              TGAAACTGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF050B15+           ATATGAATGATAAATAAGCAGTAAGTATCAATTAAATATGATTAGAATTCAAGCAGTGAA
                      ____________________________________________________________
consensus             ATATGAATGATAAATAAGCAGTAAGTATCAATTAAATATGATTAGAATTCAAGCAGTGAA
 
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JMFF050B15+           ATAACAGTTTTCTCTTCCTCCTTTCCTGGTAAATGTGAGGAGAATGAGATTGCAATTTAG
                      ____________________________________________________________
consensus             ATAACAGTTTTCTCTTCCTCCTTTCCTGGTAAATGTGAGGAGAATGAGATTGCAATTTAG
 
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JMFF050B15+           ACTCACAGACAAAGGGCATTTTCTCATCCTCTTTGCTTAACTTTTCACCACACTCCCAAC
                      ____________________________________________________________
consensus             ACTCACAGACAAAGGGCATTTTCTCATCCTCTTTGCTTAACTTTTCACCACACTCCCAAC
 
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JMFF050B15+           ACAAATGTTTCACCATAAAAAGCAAGAAAACATCAATAATTCAACCAACAAATCTAAAGG
JMFS139E04+                                            CAATAATTCAACCAACAAATCTAAAGG
                      ____________________________________________________________
consensus             ACAAATGTTTCACCATAAAAAGCAAGAAAACATCAATAATTCAACCAACAAATCTAAAGG
 
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JMFF050B15+           CATCAACATTGTCTATACATAAATTTAAAGTGTCCTGCCAAGTTCTACTCACTAAAAAAC
JMFS139E04+           CATCAACATTGTCTATACATAAATTTAAAGTGTCCTGCCAAGTTCTACTCACTAAAAAAC
                      ____________________________________________________________
consensus             CATCAACATTGTCTATACATAAATTTAAAGTGTCCTGCCAAGTTCTACTCACTAAAAAAC
 
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JMFF050B15+           ACAAATCTTATGCAATTAAATGACAATACATCTGATTATAGACAGAATTTAAATGCATGG
JMFS139E04+           ACAAATCTTATGCAATTAAATGACAATACATCTGATTATAGACAGAATTTAAATGCATGG
                      ____________________________________________________________
consensus             ACAAATCTTATGCAATTAAATGACAATACATCTGATTATAGACAGAATTTAAATGCATGG
 
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JMFF050B15+           TTTTTAAACCCCAAGTCAGTAGAATTGCCATCACTCTTTCAAAAAAAAAATGTTATCTTC
JMFS139E04+           TTTTTAAACCCCAAGTCAGTAGAATTGCCATCACTCTTTC-AAAAAAAAATGTTATCTTC
                      ____________________________________________________________
consensus             TTTTTAAACCCCAAGTCAGTAGAATTGCCATCACTCTTTCAAAAAAAAAATGTTATCTTC
 
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JMFF050B15+           TTTAAAAAGAATAAAATATATATATCTCTCTTTGAAAAAGATAGCTGCAAGATCAGATTT
JMFS139E04+           TTTAAAAAGAATAAAATATATATATCTCTCTTTGAAAAAGATAGCTGCAAGATCAGATTT
                      ____________________________________________________________
consensus             TTTAAAAAGAATAAAATATATATATCTCTCTTTGAAAAAGATAGCTGCAAGATCAGATTT
 
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JMFF050B15+           TGACTTCACTAACTTCACTGCTCCAATACACTTTCCCTTGCATTCAGATCCCAGATCAAT
JMFS139E04+           TGACTTCACTAACTTCACTGCTCCAATACACTTTCCCTTGCATTCAGATCCCAGATCAAT
                      ____________________________________________________________
consensus             TGACTTCACTAACTTCACTGCTCCAATACACTTTCCCTTGCATTCAGATCCCAGATCAAT
 
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JMFF050B15+           CAGATCAGATTATCAGAAAGCTCAAGTCATAAGAAAATTGCACTATAAGCTTCAATACAA
JMFS139E04+           CAGATCAGATTATCAGAAAGCTCAAGTCATAAGAAAATTGCACTATAAGCTTCAATACAA
                      ____________________________________________________________
consensus             CAGATCAGATTATCAGAAAGCTCAAGTCATAAGAAAATTGCACTATAAGCTTCAATACAA
 
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JMFF050B15+           AGCAAAACCATTCAT                                             
JMFS139E04+           AGCAAAACCATTCATTCATTCTTAAAGAATCCGCCAACTCTCTAAAACAACACAATCATT
                      ____________________________________________________________
consensus             AGCAAAACCATTCATTCATTCTTAAAGAATCCGCCAACTCTCTAAAACAACACAATCATT
 
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JMFS139E04+           ACATGCATCAGAACAAATCCAAACTAAGAAAATCCCATCATGTCTTCTTTTTTTTTTTCA
                      ____________________________________________________________
consensus             ACATGCATCAGAACAAATCCAAACTAAGAAAATCCCATCATGTCTTCTTTTTTTTTTTCA
 
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JMFS139E04+           ATTTCTTGAGCTGATTAACAAGAACAGTGTCCAATTGTCCATTCCATATGATCAAGATTT
                      ____________________________________________________________
consensus             ATTTCTTGAGCTGATTAACAAGAACAGTGTCCAATTGTCCATTCCATATGATCAAGATTT
 
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JMFS139E04+           GGGCTTTTGTCTTATCCCAAGAAGAAAATGAAACAAAACCCGGAGAGAAAGCAAGGAAAA
                      ____________________________________________________________
consensus             GGGCTTTTGTCTTATCCCAAGAAGAAAATGAAACAAAACCCGGAGAGAAAGCAAGGAAAA