Contig 007700:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025H11Sequence575007700 (4)ref|XP_009593688.1|4e-62PREDICTED: protein NRT1/ PTR FAMILY 1.2-like [Nicotiana tomentosiformis]760014858ref|XP_009593688.1|1e-119PREDICTED: protein NRT1/ PTR FAMILY 1.2-like [Nicotiana tomentosiformis]
JMFS109C08Sequence616007700 (4)ref|XP_009593688.1|1e-73PREDICTED: protein NRT1/ PTR FAMILY 1.2-like [Nicotiana tomentosiformis]
JMFS138G10Sequence617007700 (4)ref|XP_009628045.1|2e-47PREDICTED: protein NRT1/ PTR FAMILY 1.2-like [Nicotiana tomentosiformis]
JMFS138G11Sequence578007700 (4)emb|CDY20187.1|1e-12BnaA01g28150D [Brassica napus]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS109C08+                                                             CTTGTCCAAC
                      ____________________________________________________________
consensus                                                               CTTGTCCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS109C08+           TGGTCTGCTCCAAATGCTAGAGAACATGGTCTTATCCCACCCGCGCCAATCGACATGAGC
JMFF025H11+                                                CACCCGCGCCAATCGACATGAGC
                      ____________________________________________________________
consensus             TGGTCTGCTCCAAATGCTAGAGAACATGGTCTTATCCCACCCGCGCCAATCGACATGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS109C08+           ACAAATGAAGATATCAGCACAAAGTATTGTGCTGGTGAAGCAGTTTTACAGGGCTGCCCT
JMFF025H11+           ACAAATGAAGATATCAGCACAAAGTATTGTGCTGGTGAAGCAGTTTTACAGGGCTGCCCT
JMFS138G10+                                                    AGTTTTACAGGGCTGCCCT
                      ____________________________________________________________
consensus             ACAAATGAAGATATCAGCACAAAGTATTGTGCTGGTGAAGCAGTTTTACAGGGCTGCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS109C08+           AATTGAGTGCATGCAGGCCTTAACTGCCTAATCATTGCAGTTAACCACAAAACAACCATT
JMFF025H11+           AATTGAGTGCATGCAGGCCTTAACTGCCTAATCATTGCAGTTAACCACAAAACAACCATT
JMFS138G10+           AATTGAGTGCATGCAGGCCTTAACTGCCTAATCATTGCAGTTAACCACAAAACAACCATT
                      ____________________________________________________________
consensus             AATTGAGTGCATGCAGGCCTTAACTGCCTAATCATTGCAGTTAACCACAAAACAACCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS109C08+           CCCAGGAAGCTAAACACAGAGCCAAGAGCAATGGTGAGGAAACGACCCAGATAAGAATCT
JMFF025H11+           CCCAGGAAGCTAAACACAGAGCCAAGAGCAATGGTGAGGAAACGACCCAGATAAGAATCT
JMFS138G11+                       AACACAGAGCCAAGAGCTGTGGTGAGTTATCGACCCAATTAAGACTTT
JMFS138G10+           CCCAGGAAGCTAAACACAGAGCCAAGAGCAATGGTGAGGAAACGACCCAGATAAGAATCT
                      ____________________________________________________________
consensus             CCCAGGAAGCTAAACACAGAGCCAAGAGCAATGGTGAGGAAACGACCCAGATAAGAATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS109C08+           GCAACAAAAGCCCCAAGCAAAGGCATGAAATTG-GTGGCAGCGGACCAGAAGAAGAGCAA
JMFF025H11+           GCAACAAAAGCCCCAAGCAAAGGCATGAAATTG-GTGGCAGCGGACCAGAAGAAGAGCAA
JMFS138G11+           GCAACAATAGCCTCAAGCATAGGCATGAAATTGTGTGGCAGCGGCCCAGAAGAAGAGCAA
JMFS138G10+           GCAACAAAAGCCCCAAGCAAAGGCATGAAATTG-GTGGCAGCGGACCAGAAGAAGAGCAA
                      ____________________________________________________________
consensus             GCAACAAAAGCCCCAAGCAAAGGCATGAAATTG-GTGGCAGCGGACCAGAAGAAGAGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS109C08+           GTTTTGGCCTTTGGTCACACCCATTCCATAATCTTTCATCAAATACAGAATCATGTTGGG
JMFF025H11+           GTTTTGGCCTTTGGTCACACCCATTCCATAATCTTTCATCAAATACAGAATCATGTTGGG
JMFS138G11+           GTTTTGGCCTTTGGTCCCACCCATTCCATAGTCTTTCTTCAAATACATGTTCATGTTGGG
JMFS138G10+           GTTTTGGCCTTTGGTCACACCCATTCCATAATCTTTCATCAAATACAGAATCATGTTGGG
                      ____________________________________________________________
consensus             GTTTTGGCCTTTGGTCACACCCATTCCATAATCTTTCATCAAATACAGAATCATGTTGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS109C08+           CGCAAGCCCATAGCTTGACACCTTCTCCAATGCCTCATT                     
JMFF025H11+           CGCAAGCCCATAGCTTGACACCTTCTCCAATGCCTCATTCGCT                 
JMFS138G11+           CGCAAGCCCATAGCTTGACTCTTTCTCCAATGCCTCATTGGATGCAGCCAAAAAAAAAAA
JMFS138G10+           CGCAAGCCCATAGCTTGACACCTTCTCCAATGCCTCATTCGCTGCAACCAAAAAAAAAAA
                      ____________________________________________________________
consensus             CGCAAGCCCATAGCTTGACACCTTCTCCAATGCCTCATTCGCTGCAGCCAAAAAAAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS138G11+           ACTTTCCCACTCCCATTAATCAGACAACATACATCCAGAGCCAGTTTAACCGAGCAGGTT
JMFS138G10+           AATTCCCGACACCCATTAATCAAACAAGAAACATCGAGAGCAAGCTAAACCGCGCAGGTT
                      ____________________________________________________________
consensus             ACTTTCCGACTCCCATTAATCAGACAAGATACATCGAGAGCCAGTTTAACCGCGCAGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS138G11+           GTCACCTATGACGAATGGCATGTGTGGCAAGTCCCCCCTTTGATCTGGCTTCCTTTGGGA
JMFS138G10+           GTCACCTATGACGAATGGCATG-GTGACAAGACCACCCTTTGATCTGGCTTCCCTTGGGA
                      ____________________________________________________________
consensus             GTCACCTATGACGAATGGCATGTGTGGCAAGTCCCCCCTTTGATCTGGCTTCCTTTGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS138G11+           ATGTAGATGTTCCTGATGCTCCTTCTTATTCTTCTTACACCTGCGTTTCCATATGTTTTG
JMFS138G10+           ATGTAGCTGTTCCTGCTGCTCCTTCTTCTTCTTCTTCCACTTGCGACTCCATCTGTTTTG
                      ____________________________________________________________
consensus             ATGTAGCTGTTCCTGCTGCTCCTTCTTCTTCTTCTTCCACTTGCGTTTCCATCTGTTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS138G11+           GCTCCGGGGAGGTCAGCTCCATGTGCAGCTTTTTCATGTCTGTGTTTTTTGTATCAACTT
JMFS138G10+           GCTCCGGGGAGCTCAGCTCCATCTCCAGCTTCTTCATGGCTGTGTTTTTTGTATCAACTT
                      ____________________________________________________________
consensus             GCTCCGGGGAGGTCAGCTCCATGTGCAGCTTTTTCATGTCTGTGTTTTTTGTATCAACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS138G11+           AGAGATGGATCGGAGTTT                                          
JMFS138G10+           AGAGATGGATCGGAGTTTACAGAGAGAGAGAGGGAGAGGGAATGAAGTGAGTGGAGTGGA
                      ____________________________________________________________
consensus             AGAGATGGATCGGAGTTTACAGAGAGAGAGAGGGAGAGGGAATGAAGTGAGTGGAGTGGA