Contig 007698:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS138B02Sequence561007698 (3)ref|XP_007010997.1|4e-26Glycoside hydrolase family 2 protein isoform 3 [Theobroma cacao] ref|XP_00701099
JMSF025L18Sequence669003833 (8)ref|XP_009775632.1|3e-68PREDICTED: beta-galactosidase-like [Nicotiana sylvestris] ref|XP_009775633.1| PR739007698 (3)ref|XP_009777202.1|1e-111PREDICTED: beta-galactosidase-like [Nicotiana sylvestris]
JMSF041M12Sequence786003833 (8)ref|XP_009775632.1|4e-81PREDICTED: beta-galactosidase-like [Nicotiana sylvestris] ref|XP_009775633.1| PR630007698 (3)ref|XP_002266400.1|4e-95PREDICTED: beta-galactosidase [Vitis vinifera] ref|XP_010645604.1| PREDICTED: be

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L18+                        TGAAGTGAATACTCTTTCAGCTTCAGGGGCATCATCTAGTCTTCTC
                      ____________________________________________________________
consensus                           TGAAGTGAATACTCTTTCAGCTTCAGGGGCATCATCTAGTCTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L18+          TTTAAAGTTCATATGTTATACTCGATATATGGTTCTGGAGATGTTATTCTGGAATGCAAC
                      ____________________________________________________________
consensus             TTTAAAGTTCATATGTTATACTCGATATATGGTTCTGGAGATGTTATTCTGGAATGCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L18+          GTGGAGCCATGTTCTGATCTTCCACCTCTGCCACGTGTTGGCGTTGAATTTCAACTGGAA
rJMSF041M12+                                  CCTCTGCCACGTGTTGGCGTTGAATTTCAACTGGAA
                      ____________________________________________________________
consensus             GTGGAGCCATGTTCTGATCTTCCACCTCTGCCACGTGTTGGCGTTGAATTTCAACTGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L18+          AAATCCTTGGACCAGATTAGCTGGTATGGAAGAGGACCGTTTGAATGTTACCCAGACCGT
rJMSF041M12+          AAATCCTTGGACCAGATTAGCTGGTATGGAAGAGGACCGTTTGAATGTTACCCAGACCGT
                      ____________________________________________________________
consensus             AAATCCTTGGACCAGATTAGCTGGTATGGAAGAGGACCGTTTGAATGTTACCCAGACCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L18+          AAAGCTGCTGCCCATGTAGGCATCTATAAACATAATGTTGGCGATATGCACGTGCCTTAT
rJMSF041M12+          AAAGCTGCTGCCCATGTAGGCATCTATAAACATAATGTTGGCGATATGCACGTGCCTTAT
                      ____________________________________________________________
consensus             AAAGCTGCTGCCCATGTAGGCATCTATAAACATAATGTTGGCGATATGCACGTGCCTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L18+          ATTGTTCCTGGGGAATGCTCGGGTAGGGCAGATGTTAGATGGGTGACATTTCAAAGCAAG
rJMSF041M12+          ATTGTTCCTGGGGAATGCTCGGGTAGGGCAGATGTTAGATGGGTGACATTTCAAAGCAAG
                      ____________________________________________________________
consensus             ATTGTTCCTGGGGAATGCTCGGGTAGGGCAGATGTTAGATGGGTGACATTTCAAAGCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L18+          GAGGGCACTGGCATCTACGCTTCTATGTATGGGGGCTCCCCACCAATGCAAATGAATGCT
rJMSF041M12+          GAGGGCACTGGCATCTACGCTTCTATGTATGGGGGCTCCCCACCAATGCAAATGAATGCT
                      ____________________________________________________________
consensus             GAGGGCACTGGCATCTACGCTTCTATGTATGGGGGCTCCCCACCAATGCAAATGAATGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L18+          AGCTACTACACAACGGCTGAGCTTGACCGGGCTACACACCATGAAGATCTTGTAAAAAGT
rJMSF041M12+          AGCTACTACACAACGGCTGAGCTTGACCGGGCTACACACCATGAAGATCTTGTAAAAAGT
JMFS138B02+                                                  CATGAAGATCTTGTAAAAAGT
                      ____________________________________________________________
consensus             AGCTACTACACAACGGCTGAGCTTGACCGGGCTACACACCATGAAGATCTTGTAAAAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L18+          GATAGCATTGAGGTGCATCTCGACCACAAGCACATGGGTTTGGGAGGCGACGATAGCTGG
rJMSF041M12+          GATAGCATTGAGGTGCATCTCGACCACAAGCACATGGGTTTGGGAGGCGACGATAGCTGG
JMFS138B02+           GATAGCATTGAGGTGCATCTCGACCACAAGCACATGGGTTTGGGAGGCGACGATAGCTGG
                      ____________________________________________________________
consensus             GATAGCATTGAGGTGCATCTCGACCACAAGCACATGGGTTTGGGAGGCGACGATAGCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L18+          TCGCCTTGCGTTCACGAGCAGTACCTTCTTCCTGCTGCTCCCTACTCTTTCTCCATCAGG
rJMSF041M12+          TCGCCTTGCGTTCACGAGCAGTACCTTCTTCCTGCTGCTCCCTACTCTTTCTCCATCAGG
JMFS138B02+           TCGCCTTGCGTTCACGAGCAGTACCTTCTTCCTGCTGCTCCCTACTCTTTCTCCATCAGG
                      ____________________________________________________________
consensus             TCGCCTTGCGTTCACGAGCAGTACCTTCTTCCTGCTGCTCCCTACTCTTTCTCCATCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L18+          TTTCACCCCTTAACTGCAGCAACTTCTGGCCCTGATGTCTACAAATCACAACTTTGAGGA
rJMSF041M12+          TTTCACCCCTTAACTGCAGCAACTTCTGGCCCTGATGTCTACAAATCACAACTTTGAGGA
JMFS138B02+           TTTCACCCCTTAACTGCAGCAACTTCTGGCCCTGATGTCTACAAATCACAACTTTGAGGA
                      ____________________________________________________________
consensus             TTTCACCCCTTAACTGCAGCAACTTCTGGCCCTGATGTCTACAAATCACAACTTTGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L18+          CCATTCACTCTCACTGCATGGGTGGACTTGTTTAGCCTAGACTCTGAACTTGCATGAGAA
rJMSF041M12+          CCATTCACTCTCACTGCATGGGTGGACTTGTTTAGCCTAGACTCTGAACTTGCATGAGAA
JMFS138B02+           CCATTCACTCTCACTGCATGGGTGGACTTGTTTAGCCTAGACTCTGAACTTGCATGAGAA
                      ____________________________________________________________
consensus             CCATTCACTCTCACTGCATGGGTGGACTTGTTTAGCCTAGACTCTGAACTTGCATGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025L18+          ATGTAGAAA-TAAAACTGAATAATAAAATGCCGG                          
rJMSF041M12+          ATGTAGAAATTAAAACTGAATAATAAAATGCCGGGTACCTTTTGATT             
JMFS138B02+           ATGTAGAAATTAAAACTGAATAATAAAATGCCGGGTACCTTTTGATTTGAATAATGGAAT
                      ____________________________________________________________
consensus             ATGTAGAAATTAAAACTGAATAATAAAATGCCGGGTACCTTTTGATTTGAATAATGGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS138B02+           CTGTTGGCTAAAGATTTAGTTATGTTAACAACAATTGTGATTTCCCTAGCATGGATAATC
                      ____________________________________________________________
consensus             CTGTTGGCTAAAGATTTAGTTATGTTAACAACAATTGTGATTTCCCTAGCATGGATAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS138B02+           AGTGCATGCTACTTACTCATTTGTTACAGTGCTCTTGTTAGTTATATGTTATATGCATAG
                      ____________________________________________________________
consensus             AGTGCATGCTACTTACTCATTTGTTACAGTGCTCTTGTTAGTTATATGTTATATGCATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS138B02+           TGAAAAATTGATCAGTTCAAGGGTTTGATCCTGAGTGTATCTAGTAAATAGTAATATCGC
                      ____________________________________________________________
consensus             TGAAAAATTGATCAGTTCAAGGGTTTGATCCTGAGTGTATCTAGTAAATAGTAATATCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS138B02+           GTAACACTTTAGAGAGAGTTGTTTTTCGAAAGGGTTAAAAAAAAAAAAAAAAAACTCGAG
                      ____________________________________________________________
consensus             GTAACACTTTAGAGAGAGTTGTTTTTCGAAAGGGTTAAAAAAAAAAAAAAAAAACTCGAG