Contig 007682:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS125E09Sequence551007682 (2)ref|XP_009790742.1|1e-26PREDICTED: translation initiation factor IF-2, chloroplastic [Nicotiana sylvest
JMFS127G08Sequence590007682 (2)ref|XP_009790742.1|5e-27PREDICTED: translation initiation factor IF-2, chloroplastic [Nicotiana sylvest

Alignment

This contig is upended


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JMFS127G08+                   CCTAGCGACTCGATTACTTTGCTTTTGTCTTCTCCATCACTACTGCTCTCAT
JMFS125E09+                                                            ACTGCTCTCAT
                      ____________________________________________________________
consensus                     CCTAGCGACTCGATTACTTTGCTTTTGTCTTCTCCATCACTACTGCTCTCAT
 
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JMFS127G08+           CATCAGAATCCGGGCTACGTTTTGCTCCATTCCAATCTGCTGAACTCGAGCCTGATAGGA
JMFS125E09+           CATCAGAATCCGGGCTACGTTTTGCTCCATTCCAATCTGCTGAACTCGAGCCTGATAGGA
                      ____________________________________________________________
consensus             CATCAGAATCCGGGCTACGTTTTGCTCCATTCCAATCTGCTGAACTCGAGCCTGATAGGA
 
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JMFS127G08+           CCGATTTTGGCCCTGACTTCAATTGAGGTTTGGGAGCCGGTTTGAGTAAAAGATCAGCAT
JMFS125E09+           CCGATTTTGGCCCTGACTTCAATTGAGGTTTGGGAGCCGGTTTGAGTAAAAGATCAGCAT
                      ____________________________________________________________
consensus             CCGATTTTGGCCCTGACTTCAATTGAGGTTTGGGAGCCGGTTTGAGTAAAAGATCAGCAT
 
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JMFS127G08+           TAGCATTAGCATTAGCATCATCCCCACTACTTCTAGGCGATGAATCCAATGATATCGAAG
JMFS125E09+           TAGCATTAGCATTAGCATCATCCCCACTACTTCTAGGCGATGAATCCAATGATATCGAAG
                      ____________________________________________________________
consensus             TAGCATTAGCATTAGCATCATCCCCACTACTTCTAGGCGATGAATCCAATGATATCGAAG
 
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JMFS127G08+           TTCCTTGATCAGCAATAAAATCAGCAGTGACCGAGAACCTACAAACAGACACGTATGGCC
JMFS125E09+           TTCCTTGATCAGCAATAAAATCAGCAGTGACCGAGAACCTACAAACAGACACGTATGGCC
                      ____________________________________________________________
consensus             TTCCTTGATCAGCAATAAAATCAGCAGTGACCGAGAACCTACAAACAGACACGTATGGCC
 
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JMFS127G08+           ATCTCTTCCCAACCCAAATTCTGCGAAAGCTCCTAAAATTCTTGGCAAAGGAAATGCTCC
JMFS125E09+           ATCTCTTCCCAACCCAAATTCTGCGAAAGCTCCTAAAATTCTTGGCAAAGGAAATGCTCC
                      ____________________________________________________________
consensus             ATCTCTTCCCAACCCAAATTCTGCGAAAGCTCCTAAAATTCTTGGCAAAGGAAATGCTCC
 
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JMFS127G08+           CCACCAAACCAGACGACCCTTCAAACTGCCCTGAAGAACAGCTGCAAACGCTTCCCAAAT
JMFS125E09+           CCACCAAACCAGACGACCCTTCAAACTGCCCTGAAGAACAGCTGCAAACGCTTCCCAAAT
                      ____________________________________________________________
consensus             CCACCAAACCAGACGACCCTTCAAACTGCCCTGAAGAACAGCTGCAAACGCTTCCCAAAT
 
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JMFS127G08+           TCACCAGGGAAGTCATGCTAGCCATTGCTCTCTGTGCAGATTATCTCAACACTATCATAG
JMFS125E09+           TCACCAGGGAAGTCATGCTAGCCATTGCTCTCTGTGCAGATTATCTCAACACTATCATAG
                      ____________________________________________________________
consensus             TCACCAGGGAAGTCATGCTAGCCATTGCTCTCTGTGCAGATTATCTCAACACTATCATAG
 
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JMFS127G08+           ACTTCCCACTACAAAACCAACCTCCAATTCTCCAACCCAACAAATTTAACTCCCTCCTCT
JMFS125E09+           ACTTCCCACTACAAAACCAACCTCCAATTCTCCAACCCAACAAATTTAACTCCCTCCTCT
                      ____________________________________________________________
consensus             ACTTCCCACTACAAAACCAACCTCCAATTCTCCAACCCAACAAATTTAACTCCCTCCTCT
 
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JMFS127G08+           CTACTCTTAACAATTCAAGAATCACCTTTAAGAGTCTCAGACATTTGCTCAAGAATGG  
JMFS125E09+           CTACTCTTAACAATTCAAGAATCACCTTTAAGAGTCTCAGACATTTGCTCAAGAATGGTC
                      ____________________________________________________________
consensus             CTACTCTTAACAATTCAAGAATCACCTTTAAGAGTCTCAGACATTTGCTCAAGAATGGTC