clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF038N02 | Sequence | 567 | 016315 | ref|XP_009619838.1| | 1e-89 | PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis] | 760 | 007677 (7) | ref|XP_009619838.1| | 2e-75 | PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis] |
JMFS116G05 | Sequence | 114 | 007677 (7) | ||||||||
JMFS123B01 | Sequence | 307 | 007677 (7) | ||||||||
JMSF009L23 | Sequence | 716 | 007677 (7) | ref|XP_009619838.1| | 4e-88 | PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis] | |||||
JMSF021I19 | Sequence | 535 | 009313 (5) | 735 | 007677 (7) | ref|XP_009619838.1| | 6e-81 | PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis] | |||
JMSF032N20 | Sequence | 531 | 009313 (5) | 671 | 007677 (7) | ref|NP_001233771.1| | 2e-84 | auxin response factor 4 [Solanum lycopersicum] gb|ABC69715.1| auxin response fac | |||
JMSF044D13 | Sequence | 708 | 009313 (5) | ref|XP_009592534.1| | 8e-28 | PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis] | 727 | 007677 (7) | ref|XP_009619838.1| | 5e-89 | PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF021I19+ AGGACGAGAAGAGTGACCCTTTGAGCGGAACGGG
rJMFF038N02+ TTCAAGGACGAGAAGAGTGACCCTTTGAGCGGAACGGG
____________________________________________________________
consensus TTCAAGGACGAGAAGAGTGACCCTTTGAGCGGAACGGG
. : . : . : . : . : . :
rJMSF021I19+ GGGGCCTTGTAAGCTATTTGGCTTCTCGTTGACCAAAGAGCCCTCCACCCTGAGCTCTCA
rJMSF032N20+ CTATTTGGCTTCTCGTTGACCAAAGAGCCCTCCACCCTGAGCTCTCA
rJMSF009L23+ CTATTTGGCTTCTCGTTGACCAAAGAGCCCTCCACCCTGAGCTCTCA
rJMSF044D13+ CTATTTGGCTTCTCGTTGACCAAAGAGCCCTCCACCCTGAGCTCTCA
rJMFF038N02+ GGGGCCTTGTAAGCTATTTGGCTTCTCGTTGACCAAAGAGCCCTCCACCNTGAGCTCTCA
____________________________________________________________
consensus GGGGCCTTGTAAGCTATTTGGCTTCTCGTTGACCAAAGAGCCCTCCACCCTGAGCTCTCA
. : . : . : . : . : . :
rJMSF021I19+ AGGTTCTAGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGGAGCTTGGTTGGAAGGGC
rJMSF032N20+ AGGTTCTAGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGGAGCTTGGTTGGAAGGGC
rJMSF009L23+ AGGTTCTAGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGGAGCTTGGTTGGAAGGGC
rJMSF044D13+ AGGTTCTAGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGGAGCTTGGTTGGAAGGGC
rJMFF038N02+ AGGTTCTAGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGGAGCTTGGTTGGAAGGGC
____________________________________________________________
consensus AGGTTCTAGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGGAGCTTGGTTGGAAGGGC
. : . : . : . : . : . :
rJMSF021I19+ TATTGATCTCTCGAGACTCAACGGGTATGAAGACCTGCTCATCGAGTTAGAGAAGCTCTT
rJMSF032N20+ TATTGATCTCTCGAGACTCAACGGGTATGAAGACCTGCTCATCGAGTTAGAGAAGCTCTT
rJMSF009L23+ TATTGATCTCTCGAGACTCAACGGGTATGAAGACCTGCTCATCGAGTTAGAGAAGCTCTT
rJMSF044D13+ TATTGATCTCTCGAGACTCAACGGGTATGAAGACCTGCTCATCGAGTTAGAGAAGCTCTT
rJMFF038N02+ TATTGATCTCTCGAGACTCAACGGGTATGAAGACCTGCTCATCGAGTTAGAGAAGCTCTT
____________________________________________________________
consensus TATTGATCTCTCGAGACTCAACGGGTATGAAGACCTGCTCATCGAGTTAGAGAAGCTCTT
. : . : . : . : . : . :
rJMSF021I19+ TGGAATGGAAGGCCTGCTGCGTGATCCTAACAAAGGATGGAGAATCTTGTACACCGACAG
rJMSF032N20+ TGGAATGGAAGGCCTGCTGCGTGATCCTAACAAAGGATGGAGAATCTTGTACACCGACAG
rJMSF009L23+ TGGAATGGAAGGCCTGCTGCGTGATCCTAACAAAGGATGGAGAATCTTGTACACCGACAG
rJMSF044D13+ TGGAATGGAAGGCCTGCTGCGTGATCCTAACAAAGGATGGAGAATCTTGTACACCGACAG
rJMFF038N02+ TGGAATGGAAGGCCTGCTGCGTGATCCTAACAAAGGATGGAGAATCTTGTACACCGACAG
____________________________________________________________
consensus TGGAATGGAAGGCCTGCTGCGTGATCCTAACAAAGGATGGAGAATCTTGTACACCGACAG
. : . : . : . : . : . :
rJMSF021I19+ TGAGAATGACATGATGGTCGTTGGGGACGATCCATGGCACGAGTTCTGTGAAGTTGTCTC
rJMSF032N20+ TGAGAATGACATGATGGTCGTTGGGGACGATCCATGGCACGAGTTCTGTGAAGTTGTCTC
rJMSF009L23+ TGAGAATGACATGATGGTCGTTGGGGACGATCCATGGCACGAGTTCTGTGAAGTTGTCTC
rJMSF044D13+ TGAGAATGACATGATGGTCGTTGGGGACGATCCATGGCACGAGTTCTGTGAAGTTGTCTC
rJMFF038N02+ TGAGAATGACATGATGGTCGTTGGGGACGATCCATGGCACGAGTTCTGTGAAGTTGTCTC
____________________________________________________________
consensus TGAGAATGACATGATGGTCGTTGGGGACGATCCATGGCACGAGTTCTGTGAAGTTGTCTC
. : . : . : . : . : . :
rJMSF021I19+ GAAGATCCACATATACACGCAGGAAGAGGTGGAGAAAATGAGCATAGGTGGGATAAGCGA
rJMSF032N20+ GAAGATCCACATATACACGCAGGAAGAGGTGGAGAAAATGAGCATAGGTGGGATAAGCGA
rJMSF009L23+ GAAGATCCACATATACACGCAGGAAGAGGTGGAGAAAATGAGCATAGGTGGGATAAGCGA
rJMSF044D13+ GAAGATCCACATATACACGCAGGAAGAGGTGGAGAAAATGAGCATAGGTGGGATAAGCGA
rJMFF038N02+ GAAGATCCACATATACACGCAGGAAGAGGTGGAGAAAATGAGCATAGGTGGGATAAGCGA
____________________________________________________________
consensus GAAGATCCACATATACACGCAGGAAGAGGTGGAGAAAATGAGCATAGGTGGGATAAGCGA
. : . : . : . : . : . :
rJMSF021I19+ CGACACACAAAGTTGTCTAGAGGAGGCACCGCCAGTCACAACGGATGCATCAAAGTCATC
rJMSF032N20+ CGACACACAAAGTTGTCTAGAGGAGGCACCGCCAGTCACAACGGATGCATCAAAGTCATC
rJMSF009L23+ CGACACACAAAGTTGTCTAGAGGAGGCACCGCCAGTCACAACGGATGCATCAAAGTCATC
rJMSF044D13+ CGACACACAAAGTTGTCTAGAGGAGGCACCGCCAGTCACAACGGATGCATCAAAGTCATC
rJMFF038N02+ CGACACACAAAGTTGTCTAGAGGAGGCACCGCCAGTCACAACGGATGCATCAAAGTCATC
____________________________________________________________
consensus CGACACACAAAGTTGTCTAGAGGAGGCACCGCCAGTCACAACGGATGCATCAAAGTCATC
. : . : . : . : . : . :
rJMSF021I19+ TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
rJMSF032N20+ TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
rJMSF009L23+ TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
rJMSF044D13+ TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
rJMFF038N02+ TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
JMFS123B01- TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
____________________________________________________________
consensus TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
. : . : . : . : . : . :
rJMSF021I19+ TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
rJMSF032N20+ TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
rJMSF009L23+ TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
rJMSF044D13+ TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
rJMFF038N02+ TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
JMFS123B01- TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
____________________________________________________________
consensus TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
. : . : . : . : . : . :
rJMSF021I19+ TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTAGGAGGAGACTTTTTATGA
rJMSF032N20+ TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTAGGAGGAGACTTTTTATGA
rJMSF009L23+ TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTAGGAGGAGACTTTTTATGA
rJMSF044D13+ TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTATGAGGAGACTTTTTATGA
rJMFF038N02+ TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTAGGAGGAGACTTTTTATGA
JMFS123B01- TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTAGGAGGAGACTTTTTATGA
____________________________________________________________
consensus TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTAGGAGGAGACTTTTTATGA
. : . : . : . : . : . :
rJMSF021I19+ CAGCATATGTATAACCTGAGTTTGTACTAATGATTCCTAACAATGGGAATGTCTCTAGAA
rJMSF032N20+ CAGCATATGTATAACCTGAGTT
rJMSF009L23+ CAGCATATGTATAACCTGAGTT
rJMSF044D13+ CAGCATATGTATAACC
rJMFF038N02+ CAGCATATGTATAACCTGAGTTTGTACTAATGATTCCTAACAATGGGAATGTCTCTAGAA
JMFS123B01- CAGCATATGTATAACCTGAGTTTGTACTAATGATTCCTAACAATGGGAATGTCTCTAGAA
____________________________________________________________
consensus CAGCATATGTATAACCTGAGTTTGTACTAATGATTCCTAACAATGGGAATGTCTCTAGAA
. : . : . : . : . : . :
rJMSF021I19+ CTAGAAAGCTTTTGTTGTTGTTGTTAAGCTTGCAATCTT
rJMFF038N02+ CTAGAAAGCTTTTGTTGTTGTTGTTAAGCTTGCAATCTTTAATCTGCAGAAGTGATTAGT
JMFS123B01- CTAGAAAGCTTTTGTTGTTGTTGTTAAGCTTGCAATCTTTAATCTGCAGAAGTGATTAGT
JMFS116G05- AGCTTTTGTTGTTGTTGTTAAGCTTGCAATCTTTAATCTGCAGAAGTGATTAGT
____________________________________________________________
consensus CTAGAAAGCTTTTGTTGTTGTTGTTAAGCTTGCAATCTTTAATCTGCAGAAGTGATTAGT
. : . : . : . : . : . :
rJMFF038N02+ CT
JMFS123B01- CT
JMFS116G05- CTGCTAATGTCAAAATTTCGTATGATGCAGTTTTTTTCAGTAGTCAGGGTTTCTTTATGT
____________________________________________________________
consensus CTGCTAATGTCAAAATTTCGTATGATGCAGTTTTTTTCAGTAGTCAGGGTTTCTTTATGT