Contig 007677:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038N02Sequence567016315ref|XP_009619838.1|1e-89PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]760007677 (7)ref|XP_009619838.1|2e-75PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]
JMFS116G05Sequence114007677 (7)
JMFS123B01Sequence307007677 (7)
JMSF009L23Sequence716007677 (7)ref|XP_009619838.1|4e-88PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]
JMSF021I19Sequence535009313 (5)735007677 (7)ref|XP_009619838.1|6e-81PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]
JMSF032N20Sequence531009313 (5)671007677 (7)ref|NP_001233771.1|2e-84auxin response factor 4 [Solanum lycopersicum] gb|ABC69715.1| auxin response fac
JMSF044D13Sequence708009313 (5)ref|XP_009592534.1|8e-28PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]727007677 (7)ref|XP_009619838.1|5e-89PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF021I19+ AGGACGAGAAGAGTGACCCTTTGAGCGGAACGGG
rJMFF038N02+ TTCAAGGACGAGAAGAGTGACCCTTTGAGCGGAACGGG
                      ____________________________________________________________
consensus TTCAAGGACGAGAAGAGTGACCCTTTGAGCGGAACGGG
 
. : . : . : . : . : . :
rJMSF021I19+ GGGGCCTTGTAAGCTATTTGGCTTCTCGTTGACCAAAGAGCCCTCCACCCTGAGCTCTCA
rJMSF032N20+ CTATTTGGCTTCTCGTTGACCAAAGAGCCCTCCACCCTGAGCTCTCA
rJMSF009L23+ CTATTTGGCTTCTCGTTGACCAAAGAGCCCTCCACCCTGAGCTCTCA
rJMSF044D13+ CTATTTGGCTTCTCGTTGACCAAAGAGCCCTCCACCCTGAGCTCTCA
rJMFF038N02+ GGGGCCTTGTAAGCTATTTGGCTTCTCGTTGACCAAAGAGCCCTCCACCNTGAGCTCTCA
                      ____________________________________________________________
consensus GGGGCCTTGTAAGCTATTTGGCTTCTCGTTGACCAAAGAGCCCTCCACCCTGAGCTCTCA
 
. : . : . : . : . : . :
rJMSF021I19+ AGGTTCTAGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGGAGCTTGGTTGGAAGGGC
rJMSF032N20+ AGGTTCTAGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGGAGCTTGGTTGGAAGGGC
rJMSF009L23+ AGGTTCTAGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGGAGCTTGGTTGGAAGGGC
rJMSF044D13+ AGGTTCTAGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGGAGCTTGGTTGGAAGGGC
rJMFF038N02+ AGGTTCTAGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGGAGCTTGGTTGGAAGGGC
                      ____________________________________________________________
consensus AGGTTCTAGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGGAGCTTGGTTGGAAGGGC
 
. : . : . : . : . : . :
rJMSF021I19+ TATTGATCTCTCGAGACTCAACGGGTATGAAGACCTGCTCATCGAGTTAGAGAAGCTCTT
rJMSF032N20+ TATTGATCTCTCGAGACTCAACGGGTATGAAGACCTGCTCATCGAGTTAGAGAAGCTCTT
rJMSF009L23+ TATTGATCTCTCGAGACTCAACGGGTATGAAGACCTGCTCATCGAGTTAGAGAAGCTCTT
rJMSF044D13+ TATTGATCTCTCGAGACTCAACGGGTATGAAGACCTGCTCATCGAGTTAGAGAAGCTCTT
rJMFF038N02+ TATTGATCTCTCGAGACTCAACGGGTATGAAGACCTGCTCATCGAGTTAGAGAAGCTCTT
                      ____________________________________________________________
consensus TATTGATCTCTCGAGACTCAACGGGTATGAAGACCTGCTCATCGAGTTAGAGAAGCTCTT
 
. : . : . : . : . : . :
rJMSF021I19+ TGGAATGGAAGGCCTGCTGCGTGATCCTAACAAAGGATGGAGAATCTTGTACACCGACAG
rJMSF032N20+ TGGAATGGAAGGCCTGCTGCGTGATCCTAACAAAGGATGGAGAATCTTGTACACCGACAG
rJMSF009L23+ TGGAATGGAAGGCCTGCTGCGTGATCCTAACAAAGGATGGAGAATCTTGTACACCGACAG
rJMSF044D13+ TGGAATGGAAGGCCTGCTGCGTGATCCTAACAAAGGATGGAGAATCTTGTACACCGACAG
rJMFF038N02+ TGGAATGGAAGGCCTGCTGCGTGATCCTAACAAAGGATGGAGAATCTTGTACACCGACAG
                      ____________________________________________________________
consensus TGGAATGGAAGGCCTGCTGCGTGATCCTAACAAAGGATGGAGAATCTTGTACACCGACAG
 
. : . : . : . : . : . :
rJMSF021I19+ TGAGAATGACATGATGGTCGTTGGGGACGATCCATGGCACGAGTTCTGTGAAGTTGTCTC
rJMSF032N20+ TGAGAATGACATGATGGTCGTTGGGGACGATCCATGGCACGAGTTCTGTGAAGTTGTCTC
rJMSF009L23+ TGAGAATGACATGATGGTCGTTGGGGACGATCCATGGCACGAGTTCTGTGAAGTTGTCTC
rJMSF044D13+ TGAGAATGACATGATGGTCGTTGGGGACGATCCATGGCACGAGTTCTGTGAAGTTGTCTC
rJMFF038N02+ TGAGAATGACATGATGGTCGTTGGGGACGATCCATGGCACGAGTTCTGTGAAGTTGTCTC
                      ____________________________________________________________
consensus TGAGAATGACATGATGGTCGTTGGGGACGATCCATGGCACGAGTTCTGTGAAGTTGTCTC
 
. : . : . : . : . : . :
rJMSF021I19+ GAAGATCCACATATACACGCAGGAAGAGGTGGAGAAAATGAGCATAGGTGGGATAAGCGA
rJMSF032N20+ GAAGATCCACATATACACGCAGGAAGAGGTGGAGAAAATGAGCATAGGTGGGATAAGCGA
rJMSF009L23+ GAAGATCCACATATACACGCAGGAAGAGGTGGAGAAAATGAGCATAGGTGGGATAAGCGA
rJMSF044D13+ GAAGATCCACATATACACGCAGGAAGAGGTGGAGAAAATGAGCATAGGTGGGATAAGCGA
rJMFF038N02+ GAAGATCCACATATACACGCAGGAAGAGGTGGAGAAAATGAGCATAGGTGGGATAAGCGA
                      ____________________________________________________________
consensus GAAGATCCACATATACACGCAGGAAGAGGTGGAGAAAATGAGCATAGGTGGGATAAGCGA
 
. : . : . : . : . : . :
rJMSF021I19+ CGACACACAAAGTTGTCTAGAGGAGGCACCGCCAGTCACAACGGATGCATCAAAGTCATC
rJMSF032N20+ CGACACACAAAGTTGTCTAGAGGAGGCACCGCCAGTCACAACGGATGCATCAAAGTCATC
rJMSF009L23+ CGACACACAAAGTTGTCTAGAGGAGGCACCGCCAGTCACAACGGATGCATCAAAGTCATC
rJMSF044D13+ CGACACACAAAGTTGTCTAGAGGAGGCACCGCCAGTCACAACGGATGCATCAAAGTCATC
rJMFF038N02+ CGACACACAAAGTTGTCTAGAGGAGGCACCGCCAGTCACAACGGATGCATCAAAGTCATC
                      ____________________________________________________________
consensus CGACACACAAAGTTGTCTAGAGGAGGCACCGCCAGTCACAACGGATGCATCAAAGTCATC
 
. : . : . : . : . : . :
rJMSF021I19+ TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
rJMSF032N20+ TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
rJMSF009L23+ TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
rJMSF044D13+ TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
rJMFF038N02+ TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
JMFS123B01- TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
                      ____________________________________________________________
consensus TTCAGTCGGCCTCCCCAACCCCAATTCTTCTCCAACAGTGAGCAAGATCTGAAGCTTTTT
 
. : . : . : . : . : . :
rJMSF021I19+ TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
rJMSF032N20+ TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
rJMSF009L23+ TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
rJMSF044D13+ TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
rJMFF038N02+ TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
JMFS123B01- TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
                      ____________________________________________________________
consensus TATGTCGTTAATTCCCGTGTAATGCTATGATGCTTTAACTTAGTTTGTATCCTGAAATTA
 
. : . : . : . : . : . :
rJMSF021I19+ TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTAGGAGGAGACTTTTTATGA
rJMSF032N20+ TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTAGGAGGAGACTTTTTATGA
rJMSF009L23+ TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTAGGAGGAGACTTTTTATGA
rJMSF044D13+ TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTATGAGGAGACTTTTTATGA
rJMFF038N02+ TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTAGGAGGAGACTTTTTATGA
JMFS123B01- TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTAGGAGGAGACTTTTTATGA
                      ____________________________________________________________
consensus TGCTCAATAATTTGCTCACTCCACATGATAAGTATGTAAGTAGGAGGAGACTTTTTATGA
 
. : . : . : . : . : . :
rJMSF021I19+ CAGCATATGTATAACCTGAGTTTGTACTAATGATTCCTAACAATGGGAATGTCTCTAGAA
rJMSF032N20+ CAGCATATGTATAACCTGAGTT
rJMSF009L23+ CAGCATATGTATAACCTGAGTT
rJMSF044D13+ CAGCATATGTATAACC
rJMFF038N02+ CAGCATATGTATAACCTGAGTTTGTACTAATGATTCCTAACAATGGGAATGTCTCTAGAA
JMFS123B01- CAGCATATGTATAACCTGAGTTTGTACTAATGATTCCTAACAATGGGAATGTCTCTAGAA
                      ____________________________________________________________
consensus CAGCATATGTATAACCTGAGTTTGTACTAATGATTCCTAACAATGGGAATGTCTCTAGAA
 
. : . : . : . : . : . :
rJMSF021I19+ CTAGAAAGCTTTTGTTGTTGTTGTTAAGCTTGCAATCTT
rJMFF038N02+ CTAGAAAGCTTTTGTTGTTGTTGTTAAGCTTGCAATCTTTAATCTGCAGAAGTGATTAGT
JMFS123B01- CTAGAAAGCTTTTGTTGTTGTTGTTAAGCTTGCAATCTTTAATCTGCAGAAGTGATTAGT
JMFS116G05- AGCTTTTGTTGTTGTTGTTAAGCTTGCAATCTTTAATCTGCAGAAGTGATTAGT
                      ____________________________________________________________
consensus CTAGAAAGCTTTTGTTGTTGTTGTTAAGCTTGCAATCTTTAATCTGCAGAAGTGATTAGT
 
. : . : . : . : . : . :
rJMFF038N02+ CT
JMFS123B01- CT
JMFS116G05- CTGCTAATGTCAAAATTTCGTATGATGCAGTTTTTTTCAGTAGTCAGGGTTTCTTTATGT
                      ____________________________________________________________
consensus CTGCTAATGTCAAAATTTCGTATGATGCAGTTTTTTTCAGTAGTCAGGGTTTCTTTATGT