Contig 007661:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS077G01Sequence628007661 (3)ref|XP_007027382.1|4e-128ATPase, AAA-type, CDC48 protein isoform 2 [Theobroma cacao] gb|EOY07884.1| ATPas
JMFS105B12Sequence616007661 (3)ref|XP_007027382.1|4e-121ATPase, AAA-type, CDC48 protein isoform 2 [Theobroma cacao] gb|EOY07884.1| ATPas
JMFS130A09Sequence626007661 (3)ref|XP_007027382.1|1e-126ATPase, AAA-type, CDC48 protein isoform 2 [Theobroma cacao] gb|EOY07884.1| ATPas

Alignment

This contig is upended


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JMFS077G01+                                 TCACAGGTTCGCCCTCACAGAAGATTTCAGTATCAGGG
JMFS130A09+                                        TTCGCCCTCACAGAAGATTTCAGTATCAGGG
JMFS105B12+                                                       GATTTCAGTATCAGGG
                      ____________________________________________________________
consensus                                   TCACAGGTTCGCCCTCACAGAAGATTTCAGTATCAGGG
 
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JMFS077G01+           GCAACAACACAGTACTCGCCAGGGTCAGTCTCAATAACCTTAAACTCAACACTTCTCATT
JMFS130A09+           GCAACAACACAGTACTCGCCAGGGTCAGTCTCAATAACCTTAAACTCAACACTTCTCATT
JMFS105B12+           GCAACAACACAGTACTCGCCAGGGTCAGTCTCAATAACCTTAAACTCAACACTTCTCATT
                      ____________________________________________________________
consensus             GCAACAACACAGTACTCGCCAGGGTCAGTCTCAATAACCTTAAACTCAACACTTCTCATT
 
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JMFS077G01+           CCACCTCTCACAAGAAAGAAGTCGCCCTTCCTCACTGGTCGGTATGATTCAAGGAAATAT
JMFS130A09+           CCACCTCTCACAAGAAAGAAGTCGCCCTTCCTCACTGGTCGGTATGATTCAAGGAAATAT
JMFS105B12+           CCACCTCTCACAAGAAAGAAGTCGCCCTTCCTCACTGGTCGGTATGATTCAAGGAAATAT
                      ____________________________________________________________
consensus             CCACCTCTCACAAGAAAGAAGTCGCCCTTCCTCACTGGTCGGTATGATTCAAGGAAATAT
 
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JMFS077G01+           GGTTTCAAGTAAGCATCAAAGAGATTTCCAGTAACTCCTTCAATGGTGTCATCCACAGGA
JMFS130A09+           GGTTTCAAGTAAGCATCAAAGAGATTTCCAGTAACTCCTTCAATGGTGTCATCCACAGGA
JMFS105B12+           GGTTTCAAGTAAGCATCAAAATGATTTCCAGTAACTCCTTCAATGGTGTCATCCACAGGA
                      ____________________________________________________________
consensus             GGTTTCAAGTAAGCATCAAAGAGATTTCCAGTAACTCCTTCAATGGTGTCATCCACAGGA
 
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JMFS077G01+           AGAATGTGAACACGTTTGCCATACTTGACATCAGGACACTGGTGGACGGAAACAACATCT
JMFS130A09+           AGAATGTGAACACGTTTGCCATACTTGACATCAGGACACTGGTGGACGGAAACAACATCT
JMFS105B12+           AGAATGTGAACACGTTTGCCATACTTGACATCAGGACACTGGTGGACGGAAACAACATCT
                      ____________________________________________________________
consensus             AGAATGTGAACACGTTTGCCATACTTGACATCAGGACACTGGTGGACGGAAACAACATCT
 
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JMFS077G01+           CCAAGCCTCACTCTGAGGTTGTTCCTAACAACCTTGTTCATCCTAATCTTAGGTTCTTCA
JMFS130A09+           CCAAGCCTCACTCTGAGGTTGTTCCTAACAACCTTGTTCATCCTAATCTTAGGTTCTTCA
JMFS105B12+           CCAAGCCTCACTCTGAGGTTGTTCCTAACAACCTTGTTCATCCTAATCTTAGGTTCTTCA
                      ____________________________________________________________
consensus             CCAAGCCTCACTCTGAGGTTGTTCCTAACAACCTTGTTCATCCTAATCTTAGGTTCTTCA
 
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JMFS077G01+           CATGTGTCATCAGCAAGAGCAATGCAGACTGTATCCTTTCTTTTCTTACCCTTGATCATG
JMFS130A09+           CATGTGTCATCAGCAAGAGCAATGCAGACTGTATCCTTTCTTTTCTTACCCTTGATCATG
JMFS105B12+           CATGTGTCATCAGCAAGAGCAATGCAGACTGTATCCTTTCTTTTCTTACCCTTGATCATG
                      ____________________________________________________________
consensus             CATGTGTCATCAGCAAGAGCAATGCAGACTGTATCCTTTCTTTTCTTACCCTTGATCATG
 
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JMFS077G01+           ATAGTATCACCACGGAAGAGCTGGAGCTTCTCCATAGTGTTGGGGTGAAGAGACACTACA
JMFS130A09+           ATAGTATCACCACGGAAGAGCTGGAGCTTCTCCATAGTGTTGGGGTGAAGAGACACTACA
JMFS105B12+           ATAGTATCACCACGGAAGAGCTGGAGCTTCTCCATAGTGTTGGGGTGAAGAGACACTACA
                      ____________________________________________________________
consensus             ATAGTATCACCACGGAAGAGCTGGAGCTTCTCCATAGTGTTGGGGTGAAGAGACACTACA
 
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JMFS077G01+           GAGTTGTCATCATTGATCGCCTCATCCACAACCAACCGGTTGGGCGCCTTCTTCCTCTCA
JMFS130A09+           GAGTTGTCATCATTGATCGCCTCATCCACAACCAACCGGTTGGGCGCCTTCTTCCTCTCA
JMFS105B12+           GAGTTGTCATCATTGATCGCCTCATCCACAACCAACCGGTTGGGCGCCTTCTTCCTCTCA
                      ____________________________________________________________
consensus             GAGTTGTCATCATTGATCGCCTCATCCACAACCAACCGGTTGGGCGCCTTCTTCCTCTCA
 
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JMFS077G01+           AGAATCGCCGTACTGTAATCCCTCTTCGTCCCCTTCGAGTCAGATGATTCCGCTTGGTTA
JMFS130A09+           AGAATCGCCGTACTGTAATCCCTCTTCGTCCCCTTCGAGTCAGATGATTCCGCTTGGTTA
JMFS105B12+           AGAATCGCCGTACTGTAATCCCTCTTCGTCCCCTTCGAGTCAGATGATTCCGCTTGGTTA
                      ____________________________________________________________
consensus             AGAATCGCCGTACTGTAATCCCTCTTCGTCCCCTTCGAGTCAGATGATTCCGCTTGGTTA
 
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JMFS077G01+           CTCATGATGCTCTGTAGTCTTTATCGGGTCGCAGAGATTTTTCGCTCTTG          
JMFS130A09+           CTCATGATGCTCTGTAGTCTTTATCGGGTCGCAGAGATTTTTCGCTCTTG          
JMFS105B12+           CTCATGATGCTCTGTAGTCTTTATCGGGTCGCAGAGATTTTTCGCTCTTGTAAAAGGTTT
                      ____________________________________________________________
consensus             CTCATGATGCTCTGTAGTCTTTATCGGGTCGCAGAGATTTTTCGCTCTTGTAAAAGGTTT