Contig 007654:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS102B10Sequence615007654 (3)ref|XP_009614965.1|6e-21PREDICTED: putative late blight resistance protein homolog R1B-14 [Nicotiana to
JMFS132C09Sequence620007654 (3)ref|XP_006362574.1|4e-28PREDICTED: putative late blight resistance protein homolog R1B-12-like [Solanum
JMFS162F07Sequence592007654 (3)ref|XP_009614965.1|1e-26PREDICTED: putative late blight resistance protein homolog R1B-14 [Nicotiana to

Alignment

This contig is upended


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JMFS132C09+                                                                AGACGAT
                      ____________________________________________________________
consensus                                                                  AGACGAT
 
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JMFS162F07+                           TTCATTATCAAAACCAACCACGTCTTCTTCTTCAACCACGGGGG
JMFS132C09+           CTTTTATAATTTNTGCTTCATTATCAAAACCAACCACGTCTTCTTCTTCAACCACGGGGG
JMFS102B10+                                                        CTTCAACCACGGGGG
                      ____________________________________________________________
consensus             CTTTTATAATTTNTGCTTCATTATCAAAACCAACCACGTCTTCTTCTTCAACCACGGGGG
 
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JMFS162F07+           CCATCCTCTGCAGAATTGGTTGGCCTCTGTTGGGTTCATCTATGAGGGCCTGAAGAACTG
JMFS132C09+           CCATCCTCTGCAGAATTGGTTGGCCTCTGTTGGGTTCATCTATGAGGGCCTGAAGAACTG
JMFS102B10+           CCATCCTCTGCAGAATTGGTTGGCCTCTGTTGGGTTCATCTATGAGGGCCTGAAGAACTG
                      ____________________________________________________________
consensus             CCATCCTCTGCAGAATTGGTTGGCCTCTGTTGGGTTCATCTATGAGGGCCTGAAGAACTG
 
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JMFS162F07+           GGGAGTGATCTTGCCTGATTTTCCTAACCCTTTCTCTGATGCTCTGAATCTCCCTCGCGG
JMFS132C09+           GGGAGTGATCTTGCCTGATTTTCCTAACCCTTTCTCTGATGCTCTGAATCTCCCTCGCGG
JMFS102B10+           GGGAGTGATCTTGCCTGATTTTCCTAACCCTTTCTCTGATGCTCTGAATCTCCCTCGCGG
                      ____________________________________________________________
consensus             GGGAGTGATCTTGCCTGATTTTCCTAACCCTTTCTCTGATGCTCTGAATCTCCCTCGCGG
 
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JMFS162F07+           ATTCGTTAACCTTGGCGTAATAAGCCAGTATTTGCAGGTATTTCATCAGCCCTCTGTTAT
JMFS132C09+           ATTCGTTAACCTTGGCGTAATAAGCCAGTATTTGCAGGTATTTCATCAGCCCTCTGTTAT
JMFS102B10+           ATTCGTTAACCTTGGCGTAATAAGCCAGTATTTGCAGGTATTTCATCAGCCCTCTGTTAT
                      ____________________________________________________________
consensus             ATTCGTTAACCTTGGCGTAATAAGCCAGTATTTGCAGGTATTTCATCAGCCCTCTGTTAT
 
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JMFS162F07+           TATACTTCTTCGTCTCCACAGTGTACTTAAGGATGGCATCCTCGGCATCAGTAACAACGT
JMFS132C09+           TATACTTCTTCGTCTCCACAGTGTACTTAAGGATGGCATCCTCGGCATCAGTAACAACGT
JMFS102B10+           TATACTTCTTCGTCTCCACAGTGTACTTAAGGATGGCATCCTCGGCATCAGTAACAACGT
                      ____________________________________________________________
consensus             TATACTTCTTCGTCTCCACAGTGTACTTAAGGATGGCATCCTCGGCATCAGTAACAACGT
 
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JMFS162F07+           TTCGGATCTTGTCCACCACGTCTTGCAGGACGAAGTTGTCGCGGGCTCGCTGGTTCATCG
JMFS132C09+           TTCGGATCTTGTCCACCACGTCTTGCAGGACGAAGTTGTCGCGGGCTCGCTGGTTCATCG
JMFS102B10+           TTCGGATCTTGTCCACCACGTCTTGCAGGACGAAGTTGTCGCGGGCTCGCTGGTTCATCG
                      ____________________________________________________________
consensus             TTCGGATCTTGTCCACCACGTCTTGCAGGACGAAGTTGTCGCGGGCTCGCTGGTTCATCG
 
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JMFS162F07+           ACGCCTGCATGAGATAGGCGTTGAAGGATTCCAGGTCGGCCACCAAGTCGTCGGTCTGGT
JMFS132C09+           ACGCCTGCATGAGATAGGCGTTGAAGGATTCCAGGTCGGCCACCAAGTCGTCGGTCTGGT
JMFS102B10+           ACGCCTGCATGAGATAGGCGTTGAAGGATTCCAGGTCGGCCACCAAGTCGTCGGTCTGGT
                      ____________________________________________________________
consensus             ACGCCTGCATGAGATAGGCGTTGAAGGATTCCAGGTCGGCCACCAAGTCGTCGGTCTGGT
 
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JMFS162F07+           CCTTTATCCAGATTATGTAGGACCCGTTTTCGTCTACTAGTGTTGCTAGCCGTCTTACGA
JMFS132C09+           CCTTTATCCAGATTATGTAGGACCCGTTTTCGTCTACTAGTGTTGCTAGCCGTCTTACGA
JMFS102B10+           CCTTTATCCAGATTATGTAGGACCCGTTTTCGTCTACTAGTGTTGCTAGCCGTCTTACGA
                      ____________________________________________________________
consensus             CCTTTATCCAGATTATGTAGGACCCGTTTTCGTCTACTAGTGTTGCTAGCCGTCTTACGA
 
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JMFS162F07+           GCTCCCCCACCAGTGCATCGGCGGCGGTGGCCATAGCGAAGTTGATCTCCGAGGTGTGGT
JMFS132C09+           GCTCCCCCACCAGTGCATCGGCGGCGGTGGCCATAGCGAAGTTGATCTCCGAGGTGTGGT
JMFS102B10+           GCTCCCCCACCAGTGCATCGGCGGCGGTGGCCATAGCGAAGTTGATCTCCGAGGTGTGGT
                      ____________________________________________________________
consensus             GCTCCCCCACCAGTGCATCGGCGGCGGTGGCCATAGCGAAGTTGATCTCCGAGGTGTGGT
 
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JMFS162F07+           GGTTAACTGTGAAGTTGGGTAGCTTCTTCCATGGTTTCTGGGAGCTTAGTAAAGTAAAGT
JMFS132C09+           GGTTAACTGTGAAGTTGGGTAGCTTCTTCCATGGTTTCTGGGAGCTTAGTAAAGTAAAGT
JMFS102B10+           GGTTAACTGTGAAGTTGGGTAGCTTCTTCCATGGTTTCTGGGAGCTTAGTAAAGTAAAGT
                      ____________________________________________________________
consensus             GGTTAACTGTGAAGTTGGGTAGCTTCTTCCATGGTTTCTGGGAGCTTAGTAAAGTAAAGT
 
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JMFS162F07+           AAAGTAAA                                                    
JMFS132C09+           AAAGTAAA                                                    
JMFS102B10+           AAAGTAAACTCTCTGGCGTTTGCTTCTCTTGTTCTTGGAAACTTCTGAGGAAGACTTTAA
                      ____________________________________________________________
consensus             AAAGTAAACTCTCTGGCGTTTGCTTCTCTTGTTCTTGGAAACTTCTGAGGAAGACTTTAA