Contig 007623:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS025E04Sequence618007623 (3)ref|XP_009617907.1|3e-61PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X2 [Nicotiana t
JMFS065D03Sequence608007623 (3)emb|CDP02173.1|4e-49unnamed protein product [Coffea canephora]
JMFS142E11Sequence614007623 (3)ref|XP_009617900.1|3e-67PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Nicotiana t

Alignment

This contig is upended


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JMFS142E11+                              TTCACAAAGCTTATAGCTTCTTCAAACTCAACAGTCCTTTT
JMFS025E04+                                                      AACTCAACAGTCCTTTT
                      ____________________________________________________________
consensus                                TTCACAAAGCTTATAGCTTCTTCAAACTCAACAGTCCTTTT
 
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JMFS142E11+           TTGAGGAACCACTTCCTCCTCAGTAAGGGTTATTTCATAACCTTTTGGTAAGAAGGTGTT
JMFS025E04+           NTGAGGAACCACTTCCTCCTCAGTAAGGGTTATTTCATAACCTTTTGGTAAGAAGGTGTT
JMFS065D03+                                                              GAAGGTGTT
                      ____________________________________________________________
consensus             TTGAGGAACCACTTCCTCCTCAGTAAGGGTTATTTCATAACCTTTTGGTAAGAAGGTGTT
 
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JMFS142E11+           GAACCCAAGAATTAAATTTGGATGTCCTTTGAATAAGTCCTTCACCCTCACAATGACACC
JMFS025E04+           GAACCCAAGAATTAAATTTGGATGTCCTTTGAATAAGTCCTTCACCCTCACAATGACACC
JMFS065D03+           GAACCCAAGAATTAAATTTGGATGTCCTTTGAATAAGTCCTTCACCCTCACAATGACACC
                      ____________________________________________________________
consensus             GAACCCAAGAATTAAATTTGGATGTCCTTTGAATAAGTCCTTCACCCTCACAATGACACC
 
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JMFS142E11+           AGCAGTATCAATTCTTTGAGCCTTAAAATCTTTCATAACATCAAGAAACATGTCATACTT
JMFS025E04+           AGCAGTATCAATTCTTTGAGCCTTAAAATCTTTCATAACATCAAGAAACATGTCATACTT
JMFS065D03+           AGCAGTATCAATTCTTTGAGCCTTAAAATCTTTCATAACATCAAGAAACATGTCATACTT
                      ____________________________________________________________
consensus             AGCAGTATCAATTCTTTGAGCCTTAAAATCTTTCATAACATCAAGAAACATGTCATACTT
 
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JMFS142E11+           CTCCCTTTGATCCTGGAACATGTCTTTAACATCCTTCAAATAAGTTAATGCATCATTGGT
JMFS025E04+           CTCCCTTTGATCCTGGAACATGTCTTTAACATCCTTCAAATAAGTTAATGCATCATTGGT
JMFS065D03+           CTCCCTTTGATCCTGGAACATGTCTTTAACATCCTTCAAATAAGTTAATGCATCATTGGT
                      ____________________________________________________________
consensus             CTCCCTTTGATCCTGGAACATGTCTTTAACATCCTTCAAATAAGTTAATGCATCATTGGT
 
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JMFS142E11+           GGTGAGCTTCTGGGTACTACCAGGGACACTACCACCAGTTCCTCCATTGCTACCACGGTC
JMFS025E04+           GGTGAGCTTCTGGGTACTACCAGGGACACTACCACCAGTTCCTCCATTGCTACCACGGTC
JMFS065D03+           GGTGAGCTTCTGGGTACTACCAGGGACACTACCACCAGTTCCTCCATTGCTACCACGGTC
                      ____________________________________________________________
consensus             GGTGAGCTTCTGGGTACTACCAGGGACACTACCACCAGTTCCTCCATTGCTACCACGGTC
 
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JMFS142E11+           ACCACCTCCACTTCCAGGGGCTTGAGATTGCCCATAGGATTCACCCCGCGAAGAGCCAAA
JMFS025E04+           ACCACCTCCACTTCCAGGGGCTTGAGATTGCCCATAGGATTCACCCCGCGAAGAGCCAAA
JMFS065D03+           ACCACCTCCACTTCCAGGGGCTTGAGATTGCCCATAGGATTCACCCCGCGAAGAGCCAAA
                      ____________________________________________________________
consensus             ACCACCTCCACTTCCAGGGGCTTGAGATTGCCCATAGGATTCACCCCGCGAAGAGCCAAA
 
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JMFS142E11+           TGGCTTCTTAAACTGAGGACTACCGCAAACATCATCCCTTAATCTCTTCATG-CTCAGAA
JMFS025E04+           TGGCTTCTTAAACTGAGGACTACCGCAAACATCATCCCTTAATCTCTTCATGCCTCAGAA
JMFS065D03+           TGGCTTCTTAAACTGAGGACTACCGCAAACATCATCCCTTAATCTCTTCATG-CTCAGAA
                      ____________________________________________________________
consensus             TGGCTTCTTAAACTGAGGACTACCGCAAACATCATCCCTTAATCTCTTCATG-CTCAGAA
 
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JMFS142E11+           GTTTTCCTCAGAAAGAAAATCTGAGGACGAAGAAAACAGAGCGCTCAGCAGATCTAACCA
JMFS025E04+           GTTTTCCTCAGAAAGAAAATCTGAGGACGAAGAAAACAGAGCGCTCAGCAGATCTAACCA
JMFS065D03+           GTTTTCCTCAGAAAGAAAATCTGAGGACGAAGAAAACAGAGCGCTCAGCAGATCTAACCA
                      ____________________________________________________________
consensus             GTTTTCCTCAGAAAGAAAATCTGAGGACGAAGAAAACAGAGCGCTCAGCAGATCTAACCA
 
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JMFS142E11+           CCGCTGAAAGGAAAAACAGTTCAATCGTTTGGATCAAAATAAAAAAATCATTTTTTCTCT
JMFS025E04+           CCGCTGAAAGGAAAAACAGTTCAATCGTTTGGATCAAAATAAAAAAATCATTTTTTCTCT
JMFS065D03+           CCGCTGAAAGGAAAAACAGTTCAATCGTTTGGATCAAAATAAAAAAATCATTTTTTCTCT
                      ____________________________________________________________
consensus             CCGCTGAAAGGAAAAACAGTTCAATCGTTTGGATCAAAATAAAAAAATCATTTTTTCTCT
 
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JMFS142E11+           CATATTTCTCCAACGCTTTACTCTCTCCTCCTTC                          
JMFS025E04+           CATATTTCTCCAACGCTTTACTCTCTCCTCCTTCTCTCTCTCTATAACGCCAAGGAGGAA
JMFS065D03+           CATATTTCTCCAACGCTTTACTCTCTCCTCCTTCTCTCTCTCTATAACGCCAAGGAGGAA
                      ____________________________________________________________
consensus             CATATTTCTCCAACGCTTTACTCTCTCCTCCTTCTCTCTCTCTATAACGCCAAGGAGGAA
 
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JMFS025E04+           C                                                           
JMFS065D03+           CAAAAACAAACACAACACAAACACACACAGGTTAGGAAAAACACGGAGGTAAAGACTCAA
                      ____________________________________________________________
consensus             CAAAAACAAACACAACACAAACACACACAGGTTAGGAAAAACACGGAGGTAAAGACTCAA