Contig 007612:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029A21Sequence475007612 (8)
JMFF032C23Sequence547007612 (8)783009862 (4)ref|XP_010252001.1|1e-114PREDICTED: polyadenylate-binding protein-interacting protein 12-like [Nelumbo n
JMFF040G23Sequence379007612 (8)739009862 (4)ref|XP_010252001.1|2e-106PREDICTED: polyadenylate-binding protein-interacting protein 12-like [Nelumbo n
JMFF051B08Sequence520007612 (8)447009862 (4)
JMFS029B03Sequence627007612 (8)
JMFS038A02Sequence665007612 (8)ref|XP_004240980.1|3e-04PREDICTED: polyadenylate-binding protein-interacting protein 11-like [Solanum l
JMFS051G08Sequence590007612 (8)
JMFS085G08Sequence602007612 (8)

Alignment

This contig is upended


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JMFS029B03+                                                              TAGCCAGAG
JMFS038A02+                              GATGGTATGGTTAGAAAAGAGGCCATCATTCTTAGCCAGAG
                      ____________________________________________________________
consensus                                GATGGTATGGTTAGAAAAGAGGCCATCATTCTTAGCCAGAG
 
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JMFS085G08+               AGGAACAAATTCTTCTGCCATGGGGTTCAACTTGGAGAACATATCCTCCAGCTCCC
JMFS029B03+           AAAGAGGAACAAATTCTTCTGCCATGGGGTTCAAC-TGGAGAACATATCCTCCAGCTCCC
JMFS038A02+           AAAGAGGAACAATTTCTTCTGCCATGGGGTTCAACTTGGAGAACATATCCTCCAGCTCCC
                      ____________________________________________________________
consensus             AAAGAGGAACAAATTCTTCTGCCATGGGGTTCAACTTGGAGAACATATCCTCCAGCTCCC
 
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JMFS085G08+           TCATTTCACTGTTGAAAGCCTCCTCTCCACCATCATCATCATCATCATTCACCTCCACGT
JMFS029B03+           TCATTTCACTGTTGAAAGCCTCCTCTCCACCATCATCATCATCATCATTCACCTCCACGT
JMFS038A02+           TCATTTCACTGTTGAAAGCCTCCTCTCCACCATCATCATCATCATCATTCACCTCCAGGT
                      ____________________________________________________________
consensus             TCATTTCACTGTTGAAAGCCTCCTCTCCACCATCATCATCATCATCATTCACCTCCACGT
 
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JMFS085G08+           CTCCGCCGCCGCCATTTTCCATGGATTGATGATCATCCAACGGCTGAGAACTGACGTGGT
JMFS029B03+           CTCCGCCGCCGCCATTTTCCATGGATTGATGATCATCCAACGGCTGAGAACTGACGTGGT
JMFS038A02+           CTCCGCCGCCGCCATTTTCCATGGATTGATGATCATCCAACGGCTGAGAACTGACGTGGT
JMFF051B08+                                      GATGATCATCCAACGGCTGAGAACTGACGTGGT
JMFF032C23+           CTCCGCCGCCGCCATTTTCCATGGATTGATGATCATCCAACGGCTGAGAACTGACGTGGT
                      ____________________________________________________________
consensus             CTCCGCCGCCGCCATTTTCCATGGATTGATGATCATCCAACGGCTGAGAACTGACGTGGT
 
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JMFS085G08+           GGTTGTTGCTGCTAAGGTGCGCCTGAAAAGGATGGACCTTTATGTATAGACCATCCGAGT
JMFS029B03+           GGTTGTTGCTGCTAAGGTGCGCCTGAAAAGGATGGACCTTTATGTATAGACCATCCGAGT
JMFS038A02+           GGTTGTTGCTGCTAAGGTGCGCCTGAAAAGGATGGACCTTTATGTATAGACCATCCGAGT
JMFF051B08+           GGTTGTTGCTGCTAAGGTGCGCTTGAAAAGGATGGACCTTTATGTATAGACCATCCGAGT
JMFF029A21+                    TGCTAAGGTGCGCCNGAAAAGGANGGACCTTTATGTATAGACCATCCGAGT
JMFF032C23+           GGTTGTTGCTGCTAAGGTGCGCCTGAAAAGGATGGACCTTTATGTATAGACCATCCGAGT
                      ____________________________________________________________
consensus             GGTTGTTGCTGCTAAGGTGCGCCTGAAAAGGATGGACCTTTATGTATAGACCATCCGAGT
 
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JMFS085G08+           CAACCACCAGATTGTTGTTGTTGTTGTTGCCGTCGTTCTTGGGCTGATCCTGGTGATGAT
JMFS029B03+           CAACCACCAGATTGTTGTTGTTGTTGTTGCCGTCGTTCTTGGGCTGATCCTGGTGATGAT
JMFS038A02+           CAACCACCAGATTGTTGTTGTTGTTGTTGCCGTCGTTCTTGGGCTGATCCTGGTGATGAT
JMFF051B08+           CAACCACCAGATTGTTGTTGTTGTTGTTGCCGTCGTTCTTGGGCTGATCCTGGTGATGAT
JMFF040G23+                                                             TGGTGATGAT
JMFF029A21+           CAACCACCAGATTGTTGTTGTTGTTGTTGCCGTCGTTCTTGGGCTGATCCTGGTGATGAT
JMFF032C23+           CAACCACCAGATTGTTGTTGTTGTTGTTGCCGTCGTTCTTGGGCTGATCCTGGTGATGAT
JMFS051G08+                    GATTGTTGTTGTTGTTGTTGCCGTCGTTCTTGGGCTGATCCTGGTGATGAT
                      ____________________________________________________________
consensus             CAACCACCAGATTGTTGTTGTTGTTGTTGCCGTCGTTCTTGGGCTGATCCTGGTGATGAT
 
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JMFS085G08+           TCTGATCTCCGCCGGCACCGCCGCCGTTGACAACCGCTCCTTGAGAACCATTCTCCACAA
JMFS029B03+           TCTGATCTCCGCCGGCACCGCCGCCGTTGACAACCGCTCCTTGAGAACCATTCTCCACAA
JMFS038A02+           TCTGATCTCCGCCGGCACCGCCGCCGTTGACAACCGCTCCTTGAGAACCATTCTCCACAA
JMFF051B08+           TCTGATCTCCGCCGGCACCGCCGCCGTTGACAACCGCTCCTTGAGAACCATTCTCCACAA
JMFF040G23+           TNTGATCTCCGCCGGCACCGCCGCCGTTGACAACCGCTCCTTGAGAACCATTCTCCACAA
JMFF029A21+           TCTGATCTCCGCCGGCACCGCCGCCGTTGACAACCGCTCCTTGAGAACCATTCTCCACAA
JMFF032C23+           TCTGATCTCCGCCGGCACCGCCGCCGTTGACAACCGCTCCTTGAGAACCATTCTCCACAA
JMFS051G08+           TCTGATCTCCGCCGGCACCGCCGCCGTTGACAACCGCTCCTTGAGAACCATTCTCCACAA
                      ____________________________________________________________
consensus             TCTGATCTCCGCCGGCACCGCCGCCGTTGACAACCGCTCCTTGAGAACCATTCTCCACAA
 
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JMFS085G08+           CTGCCATGATCGCGGCCTAAACCCTAGCTCACCCAAGCTCTATATCCAAACCCCTTCCCC
JMFS029B03+           CTGCCATGATCGCGGCCTAAACCCTAGCTCACCCAAGCTCTATATCCAAACCCCTTCCCC
JMFS038A02+           CTGCCATGATCGCGGCCTAAACCCTAGCTCACCCAAGCTCTATATCCAAACCCCTTCCCC
JMFF051B08+           CTGCCATGATCGCGGCCTAAACCCTAGCTCACCCAAGCTCTATATCCAAACCCCTTCCCC
JMFF040G23+           CTGCCATGATCGCGGCCTAAACCCTAGCTCACCCAAGCTCTATATCCAAACCCCTTCCCC
JMFF029A21+           CTGCCATGATCGCGGCCTAAACCCTAGCTCACCCAAGCTCTATATCCAAACCCCTTCCCC
JMFF032C23+           CTGCCATGATCGCGGCCTAAACCCTAGCTCACCCAAGCTCTATATCCAAACCCCTTCCCC
JMFS051G08+           CTGCCATGATCGCGGCCTAAACCCTAGCTCACCCAAGCTCTATATCCAAACCCCTTCCCC
                      ____________________________________________________________
consensus             CTGCCATGATCGCGGCCTAAACCCTAGCTCACCCAAGCTCTATATCCAAACCCCTTCCCC
 
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JMFS085G08+           GTTAACTCTCTCTAGATCGATGAATTCGATAAACCAACAACCC                 
JMFS029B03+           GTTAACTCTCTCTAGATCGATGAATTCGATAAACCAACAACCC                 
JMFS038A02+           GTTAACTCTCTCTAGATCGATGAATTCGATAAACCAACAACCC                 
JMFF051B08+           GTTAACTCTCTCTAGATCGATGAATTCGATAAACCAACAACCCGCTTGAAATGGAATTTT
JMFF040G23+           GTTAACTCTCTCTAGATCGATGAATTCGATAAACCAACAACCCGCTTGAAATGGAATTTT
JMFF029A21+           GTTAACTCTCTCTAGATCGATGAATTCGATAAACCAACAACCCGCTTGAAATGGAATTTT
JMFF032C23+           GTTAACTCTCTCTAGATCGATGAATTCGATAAACCAACAACCCGCTTGAAATGGAATTTT
JMFS051G08+           GTTAACTCTCTCTAGATCGATGAATTCGATAAACCAACAACCCGCTTGAAATGGAATTTT
                      ____________________________________________________________
consensus             GTTAACTCTCTCTAGATCGATGAATTCGATAAACCAACAACCCGCTTGAAATGGAATTTT
 
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JMFF051B08+           CTTTAAAGATTCTCCATTACCAGACAAGAAGATAACCTCGGGGAGATTGATAACGGAGAA
JMFF040G23+           CTTTAAAGATTCTCCATTACCAGACAAGAAGATAACCTCGGGGAGATTGATAACGGAGAA
JMFF029A21+           CTTTAAAGATTCTCCATTACCAGACAAGAAGATAACCTCGGGGAGATTGATAACGGAGAA
JMFF032C23+           CTTTAAAGATTCTCCATTACCAGACAAGAAGATAACCTCGGGGAGATTGATAACGGAGAA
JMFS051G08+           CTTTAAAGATTCTCCATTACCAGACAAGAAGATAACCTCGGGGAGATTGATAACGGAGAA
                      ____________________________________________________________
consensus             CTTTAAAGATTCTCCATTACCAGACAAGAAGATAACCTCGGGGAGATTGATAACGGAGAA
 
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JMFF051B08+           CACGAAAATCTTATGGGAGCCCAACCCAAAGTCAAGAAGCACAGC-AAGTAGAGACAAAA
JMFF040G23+           CACGAAAATCTTATGGGAGCCCAACCCAAAGTCAAGAAGCACAGCNAAGTAGAGACAAAA
JMFF029A21+           CACGAAAATCTTATGGGAGCCCAACCCAAAGTCAAGAAGCACAGC-AAGTAGAGACAAAA
JMFF032C23+           CACGAAAATCTTATGGGAGCCCAACCCAAAGTCAAGAAGCACAGC-AAGTAGAGACAAAA
JMFS051G08+           CACGAAAATCTTATGGGAGCCCAACCCAAAGTCAAGAAGCACAGC-AAGTAGAGACAAAA
                      ____________________________________________________________
consensus             CACGAAAATCTTATGGGAGCCCAACCCAAAGTCAAGAAGCACAGC-AAGTAGAGACAAAA
 
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JMFF051B08+           TAGTAATGAAACAGAGACAATTTTTGCCTCTTTGTGTTTCTTATTTCCCCTATGCTGCTC
JMFF040G23+           TAGTAATGAAACAGAGACAATTTTTGCCTCTTTGTGTTTCTTATTTCCCCTATGCTGCTC
JMFF029A21+           TAGTAATGAAACAGAGACAATTTTTGCCTCTTTGTGTTTCTTATTTCCCCTATGCTGCTC
JMFF032C23+           TAGTAATGAAACAGAGACAATTTTTGCCTCTTTGTGTTTCTTATTTCCCCTATGCTGCTC
JMFS051G08+           TAGTAATGAAACAGAGACAATTTTTGCCTCTTTGTGTTTCTTATTTCCCCTATGCTGCTC
                      ____________________________________________________________
consensus             TAGTAATGAAACAGAGACAATTTTTGCCTCTTTGTGTTTCTTATTTCCCCTATGCTGCTC
 
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JMFF051B08+           TTT                                                         
JMFF040G23+           TTT                                                         
JMFF029A21+           TTT                                                         
JMFF032C23+           TTT                                                         
JMFS051G08+           TTTTCGGTGATTAAGATTGAGATAGACTGAACTATATAAAGAAAGAGATTGCTTTGCTTA
                      ____________________________________________________________
consensus             TTTTCGGTGATTAAGATTGAGATAGACTGAACTATATAAAGAAAGAGATTGCTTTGCTTA
 
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JMFS051G08+           GGTAAAAAATAAAAATAAATAATAAAAAACAAAACTTTGTCGCCGCCGGAGAGGGGAAAA
                      ____________________________________________________________
consensus             GGTAAAAAATAAAAATAAATAATAAAAAACAAAACTTTGTCGCCGCCGGAGAGGGGAAAA
 
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JMFS051G08+           GAAAAAAAAAAAAAGTTAACCGTGAAATGAAAATCAAGAATTCAACTGACAGTAAACTCT
                      ____________________________________________________________
consensus             GAAAAAAAAAAAAAGTTAACCGTGAAATGAAAATCAAGAATTCAACTGACAGTAAACTCT