Contig 007610:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS042C02Sequence611007610 (4)
JMFS043H04Sequence627007610 (4)gb|EYU25748.1|1e-37hypothetical protein MIMGU_mgv1a0007532mg, partial [Erythranthe guttata] gb|EYU
JMFS044D06Sequence632007610 (4)ref|XP_006372205.1|1e-08auxin response factor 2 family protein [Populus trichocarpa] gb|ERP50002.1| auxi
JMFS051E06Sequence611007610 (4)

Alignment

This contig is upended


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JMFS043H04+                                             ATGCAGGGTGACATTATGNAGGTAGC
                      ____________________________________________________________
consensus                                               ATGCAGGGTGACATTATGNAGGTAGC
 
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JMFS043H04+           ATATTAGCATTGAGGGAAGGTTGGGGTAGTTCGGAATTTGAGCATCCACGTCTTTCTTCA
                      ____________________________________________________________
consensus             ATATTAGCATTGAGGGAAGGTTGGGGTAGTTCGGAATTTGAGCATCCACGTCTTTCTTCA
 
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JMFS043H04+           TAGACGCAGCAACCTGTTCGCTGTGGCCCTGGGGGAAGTAGACGACGTGGGTCCCGGCCG
JMFS044D06+                                               AGTAGACGACGTGGGTCCCGGCCG
                      ____________________________________________________________
consensus             TAGACGCAGCAACCTGTTCGCTGTGGCCCTGGGGGAAGTAGACGACGTGGGTCCCGGCCG
 
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JMFS043H04+           CCGGCAAGTTCACCAGCGGTCCGGCGCAGGCCTGCCATAGCTCTGGGTTTATGCTCTTCT
JMFS044D06+           CCGGCAAGTTCACCAGCGGTCCGGCGCAGGCCTGCCATAGCTCTGGGTTTATGCTCTTCT
                      ____________________________________________________________
consensus             CCGGCAAGTTCACCAGCGGTCCGGCGCAGGCCTGCCATAGCTCTGGGTTTATGCTCTTCT
 
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JMFS043H04+           TCTCA---GCTTCAGGTGGGTTGGCGTTAGCCGCCGGCGGTGGCGTCTTCATTGCAGTAC
JMFS044D06+           TCTCAGCTGCTTCAGGTGGGTTGGCGTTAGCCGCCGGCGGTGGCGTCTTCATTGCAGTAC
JMFS042C02+                   GCTTCAGGTGGGTTGGCGTTAGCCGCCGGCGGTGGCGTCTTCATTGCAGTAC
                      ____________________________________________________________
consensus             TCTCAGCTGCTTCAGGTGGGTTGGCGTTAGCCGCCGGCGGTGGCGTCTTCATTGCAGTAC
 
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JMFS043H04+           TTCAACCGCC-AAAAAAAAAACTCACTTTCCGAGCTGCAAACAAACACCCAGATAACCCT
JMFS044D06+           TTCAACCGCCAAAAAAAAAAACTCACTTTCCGAGCTGCAAACAAACACCCAGATAACCCT
JMFS042C02+           TTCAACCGCCAAAAAAAAAAACTCACTTTCCGAGCTGCAAACAAACACCCAGATAACCCT
JMFS051E06+                      AAAAAAAAAACTCACTTTCCGAGCTGCAAACAAACACCCAGATAACCCT
                      ____________________________________________________________
consensus             TTCAACCGCCAAAAAAAAAAACTCACTTTCCGAGCTGCAAACAAACACCCAGATAACCCT
 
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JMFS043H04+           TACCGGAGATTCATATCTGCCTTCAGTAAATCGGAGCTCCGACACCCCAACTCCGGCTGG
JMFS044D06+           TACCGGAGATTCATATCTGCCTTCAGTAAATCGGAGCTCCGACACCCCAACTCCGGCTGG
JMFS042C02+           TACCGGAGATTCATATCTGCCTTCAGTAAATCGGAGCTCCGACACCCCAACTCCGGCTGG
JMFS051E06+           TACCGGAGATTCATATCTGCCTTCAGTAAATCGGAGCTCCGACACCCCAACTCCGGCTGG
                      ____________________________________________________________
consensus             TACCGGAGATTCATATCTGCCTTCAGTAAATCGGAGCTCCGACACCCCAACTCCGGCTGG
 
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JMFS043H04+           AAAGCACGAATCTTGATTTATCAAAACATAGACTTTTTGTTTCCCTAAGCTCCCCCACTA
JMFS044D06+           AAAGCACGAATCTTGATTTATCAAAACATAGACTTTTTGTTTCCCTAAGCTCCCCCACTA
JMFS042C02+           AAAGCACGAATCTTGATTTATCAAAACATAGACTTTTTGTTTCCCTAAGCTCCCCCACTA
JMFS051E06+           AAAGCACGAATCTTGATTTATCAAAACATAGACTTTTTGTTTCCCTAAGCTCCCCCACTA
                      ____________________________________________________________
consensus             AAAGCACGAATCTTGATTTATCAAAACATAGACTTTTTGTTTCCCTAAGCTCCCCCACTA
 
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JMFS043H04+           GGAAAAGGCAAGCTAAGGAAAAAGAAGTCCCAAGCTAGTAGTCTACTATTGTATTAAACA
JMFS044D06+           GGAAAAGGCAAGCTAAGGAAAAAGAAGTCCCAAGCTAGTAGTCTACTATTGTATTAAACA
JMFS042C02+           GGAAAAGGCAAGCTAAGGAAAAAGAAGTCCCAAGCTAGTAGTCTACTATTGTATTAAACA
JMFS051E06+           GGAAAAGGCAAGCTAAGGAAAAAGAAGTCCCAAGCTAGTAGTCTACTATTGTATTAAACA
                      ____________________________________________________________
consensus             GGAAAAGGCAAGCTAAGGAAAAAGAAGTCCCAAGCTAGTAGTCTACTATTGTATTAAACA
 
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JMFS043H04+           AAAGAGATTAACCGGAATCGGAGGAAGGGAGTTCCCGGCGGCGGGAAGTGTGGCCGGAAA
JMFS044D06+           AAAGAGATTAACCGGAATCGGAGGAAGGGAGTTCCCGGCGGCGGGAAGTGTGGCCGGAAA
JMFS042C02+           AAAGAGATTAACCGGAATCGGAGGAAGGGAGTTCCCGGCGGCGGGAAGTGTGGCCGGAAA
JMFS051E06+           AAAGAGATTAACCGGAATCGGAGGAAGGGAGTTCCCGGCGGCGGGAAGTGTGGCCGGAAA
                      ____________________________________________________________
consensus             AAAGAGATTAACCGGAATCGGAGGAAGGGAGTTCCCGGCGGCGGGAAGTGTGGCCGGAAA
 
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JMFS043H04+           ATGCGGTAGAGAGAGAAAGATGTAAGGGGAGACAAGAGGAGCTTTGGAAAAGGAAGGGAT
JMFS044D06+           ATGCGGTAGAGAGAGAAAGATGTAAGGGGAGACAAGAGGAGCTTTGGAAAAGGAAGGGAT
JMFS042C02+           ATGCGGTAGAGAGAGAAAGATGTAAGGGGAGACAAGAGGAGCTTTGGAAAAGGAAGGGAT
JMFS051E06+           ATGCGGTAGAGAGAGAAAGATGTAAGGGGAGACAAGAGGAGCTTTGGAAAAGGAAGGGAT
                      ____________________________________________________________
consensus             ATGCGGTAGAGAGAGAAAGATGTAAGGGGAGACAAGAGGAGCTTTGGAAAAGGAAGGGAT
 
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JMFS043H04+           GTTGA                                                       
JMFS044D06+           GTTGAGGATTGCAGAGACCAAATGCTGCAATTCTACTTTTAACTGCCCCCTATACAGATA
JMFS042C02+           GTTGAGGATTGCAGAGACCAAATGCTGCAATTCTACTTTTAACTGCCCCCTATACAGATA
JMFS051E06+           GTTGAGGATTGCAGAGACCAAATGCTGCAATTCTACTTTTAACTGCCCCCTATACAGATA
                      ____________________________________________________________
consensus             GTTGAGGATTGCAGAGACCAAATGCTGCAATTCTACTTTTAACTGCCCCCTATACAGATA
 
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JMFS044D06+           CACCCTTCAGACACACTACTTTCTCTCTCTAGAAATCCAAGCCCCTTGCCTTCTCCCTTC
JMFS042C02+           CACCCTTCAGACACACTACTTTCTCTCTCTAGAAATCCAAGCCCCTTGCCTTCTCCCTTC
JMFS051E06+           CACCCTTCAGACACACTACTTTCTCTCTCTAGAAATCCAAGCCCCTTGCCTTCTCCCTTC
                      ____________________________________________________________
consensus             CACCCTTCAGACACACTACTTTCTCTCTCTAGAAATCCAAGCCCCTTGCCTTCTCCCTTC
 
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JMFS044D06+           CAGTTCTC                                                    
JMFS042C02+           CAGTTCTCTTTCTCTCTCTCTATCTTTCTTTGTTATTCTTCTTGTTCTTCACAAAGCTTC
JMFS051E06+           CAGTTCTCTTTCTCTCTCTCTATCTTTCTTTGTTATTCTTCTTGTTCTTCACAAAGCTTC
                      ____________________________________________________________
consensus             CAGTTCTCTTTCTCTCTCTCTATCTTTCTTTGTTATTCTTCTTGTTCTTCACAAAGCTTC
 
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JMFS042C02+           CCTTTTTCTATCTC                                              
JMFS051E06+           CCTTTTTCTATCTCTATCTCTATTGTTCCCAAAGCTAGCTTTCTTTAATCTTTTACTTTC
                      ____________________________________________________________
consensus             CCTTTTTCTATCTCTATCTCTATTGTTCCCAAAGCTAGCTTTCTTTAATCTTTTACTTTC