Contig 007608:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS001B07Sequence597007608 (6)ref|XP_009796800.1|3e-12PREDICTED: mechanosensitive ion channel protein 6-like [Nicotiana sylvestris]
JMFS050D02Sequence527007608 (6)
JMFS084B02Sequence633007608 (6)ref|XP_009630158.1|4e-21PREDICTED: mechanosensitive ion channel protein 6-like [Nicotiana tomentosiform
JMFS128H07Sequence619007608 (6)ref|XP_009796800.1|1e-13PREDICTED: mechanosensitive ion channel protein 6-like [Nicotiana sylvestris]
JMFS140G12Sequence624007608 (6)ref|XP_009796800.1|8e-14PREDICTED: mechanosensitive ion channel protein 6-like [Nicotiana sylvestris]
JMFS165E04Sequence599007608 (6)ref|XP_009630158.1|5e-05PREDICTED: mechanosensitive ion channel protein 6-like [Nicotiana tomentosiform

Alignment

This contig is upended


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JMFS084B02+                        GCATTGGACCGGCGGCGAACCGGCTCGTTCAAGTGTTCATTGAACGA
                      ____________________________________________________________
consensus                          GCATTGGACCGGCGGCGAACCGGCTCGTTCAAGTGTTCATTGAACGA
 
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JMFS084B02+           CACCCTGACTTCCTTGGGCGAAATCTGACCCAAATTGGGACTCTCCGCCACCCTCGACAG
JMFS140G12+                         TGGGCGAAATCTGACCCAAATTGGGACTCTCCGCCACCCTCGACAG
JMFS128H07+                         TGGGCGAAATCTGACCCAAATTGGGACTCTCCGCCACCCTCGACAG
JMFS001B07+                                     GACCCAAATTGGGACTCTCCGCCACCCTCGACAG
                      ____________________________________________________________
consensus             CACCCTGACTTCCTTGGGCGAAATCTGACCCAAATTGGGACTCTCCGCCACCCTCGACAG
 
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JMFS084B02+           CGGCGACTCAGTTATAAAGTCGAAACCACCTTTATTACTGTTACCGGTCTTAGCTCTCGC
JMFS140G12+           CGGCGACTCAGTTATAAAGTCGAAACCACCTTTATTACTGTTACCGGTCTTAGCTCTCGC
JMFS128H07+           CGGCGACTCAGTTATAAAGTCGAAACCACCTTTATTACTGTTACCGGTCTTAGCTCTCGC
JMFS001B07+           CGGCGACTCAGTTATANAGTCGAAACCACCTTTATTACTGTTACCGGTCTTAGCTCTCGC
JMFS165E04+                                                             TAGCTCTCGC
                      ____________________________________________________________
consensus             CGGCGACTCAGTTATAAAGTCGAAACCACCTTTATTACTGTTACCGGTCTTAGCTCTCGC
 
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JMFS084B02+           CGCCGTATCGTTGGAGAAATCGTAGCTAGAATCTCTCCAGACTTTGTTCACTATCTCCTG
JMFS140G12+           CGCCGTATCGTTGGAGAAATCGTAGCTAGAATCTCTCCAGACTTTGTTCACTATCTCCTG
JMFS128H07+           CGCCGTATCGTTGGAGAAATCGTAGCTAGAATCTCTCCAGACTTTGTTCACTATCTCCTG
JMFS001B07+           CGCCGTATCGTTGGAGAAATCGTAGCTAGAATCTCTCCAGACTTTGTTCACTATCTCCTG
JMFS165E04+           CGCCGTATCGTTGGAGAAATCGTAGCTAGAATCTCTCCAGACTTTGTTCACTATCTCCTG
                      ____________________________________________________________
consensus             CGCCGTATCGTTGGAGAAATCGTAGCTAGAATCTCTCCAGACTTTGTTCACTATCTCCTG
 
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JMFS084B02+           TGCATTTCCAGCGCCGCTTTTCCCAAACGCGGAAGACGATGGAAGCAGCTCGGTTTCTTT
JMFS140G12+           TGCATTTCCAGCGCCGCTTTTCCCAAACGCGGAAGACGATGGAAGCAGCTCGGTTTCTTT
JMFS128H07+           TGCATTTCCAGCGCCGCTTTTCCCAAACGCGGAAGACGATGGAAGCAGCTCGGTTTCTTT
JMFS001B07+           TGCATTTCCAGCGCCGCTTTTCCCAAACGCGGAAGACGATGGAAGCAGCTCGGTTTCTTT
JMFS165E04+           TGCATTTCCAGCGCCGCTTTTCCCAAACGCGGAAGACGATGGAAGCAGCTCGGTTTCTTT
JMFS050D02+                        CCGCTTTTCCCAAACGCGGAAGACGATGGAAGCAGCNCGGTTTCTTT
                      ____________________________________________________________
consensus             TGCATTTCCAGCGCCGCTTTTCCCAAACGCGGAAGACGATGGAAGCAGCTCGGTTTCTTT
 
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JMFS084B02+           AACCGCCGCATCTCTGCCATTGATCTTACCGGCGAAGTCGCTGGAATCGACGGCGGCCGG
JMFS140G12+           AACCGCCGCATCTCTGCCATTGATCTTACCGGCGAAGTCGCTGGAATCGACGGCGGCCGG
JMFS128H07+           AACCGCCGCATCTCTGCCATTGATCTTACCGGCGAAGTCGCTGGAATCGACGGCGGCCGG
JMFS001B07+           AACCGCCGCATCTCTGCCATTGATCTTACCGGCGAAGTCGCTGGAATCGACGGCGGCCGG
JMFS165E04+           AACCGCCGCATCTCTGCCATTGATCTTACCGGCGAAGTCGCTGGAATCGACGGCGGCCGG
JMFS050D02+           AACCGCCGCATCTCTGTCTTTGATCTATCCGGCGAAGTCGCTGGAATCGACGGCGGCCGG
                      ____________________________________________________________
consensus             AACCGCCGCATCTCTGCCATTGATCTTACCGGCGAAGTCGCTGGAATCGACGGCGGCCGG
 
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JMFS084B02+           GGAGGGAGAAGGAGAAGGAGAAGACCTCGACGGCGTGGAAGAAGACGAGAGCGGCGTAGC
JMFS140G12+           GGAGGGAGAAGGAGAAGGAGAAGACCTCGACGGCGTGGAAGAAGACGAGAGCGGCGTAGC
JMFS128H07+           GGAGGGAGAAGGAGAAGGAGAAGACCTCGACGGCGTGGAAGAAGACGAGAGCGGCGTAGC
JMFS001B07+           GGAGGGAGAAGGAGAAGGAGAAGACCTCGACGGCGTGGAAGAAGACGAGAGCGGCGTAGC
JMFS165E04+           GGAGGGAGAAGGAGAAGGAGAAGACCTCGACGGCGTGGAAGAAGACGAGAGCGGCGTAGC
JMFS050D02+           GGATCTAGAAGGAGAAGGAGAAGACCTCGACGGCGTGGAAGAAGACGAGAGCGGCGTAGC
                      ____________________________________________________________
consensus             GGAGGGAGAAGGAGAAGGAGAAGACCTCGACGGCGTGGAAGAAGACGAGAGCGGCGTAGC
 
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JMFS084B02+           CATGGCCATGGCCGAAATGGGATCTTCCTGAGCTTCGATCTGGTTCAACAGAACTCTGCG
JMFS140G12+           CATGGCCATGGCCGAAATGGGATCTTCCTGAGCTTCGATCTGGTTCAACAGAACTCTGCG
JMFS128H07+           CATGGCCATGGCCGAAATGGGATCTTCCTGAGCTTCGATCTGGTTCAACAGAACTCTGCG
JMFS001B07+           CATGGCCATGGCCGAAATGGGATCTTCCTGAGCTTCGATCTGGTTCAACAGAACTCTGCG
JMFS165E04+           CATGGCCATGGCCGAAATGGGATCTTCCTGAGCTTCGATCTGGTTCAACAGAACTCTGCG
JMFS050D02+           CATGGCCATGGCCGAAATGGGATCTTCCTGAGCTTCGATCTGGTTCAACAGAACTCTGCG
                      ____________________________________________________________
consensus             CATGGCCATGGCCGAAATGGGATCTTCCTGAGCTTCGATCTGGTTCAACAGAACTCTGCG
 
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JMFS084B02+           CTCGTCTTCCTGTCTGGGAGGGTGATCCGGAGAAAGAGCTTTGAAGGATCTTCTTAGCTT
JMFS140G12+           CTCGTCTTCCTGTCTGGGAGGGTGATCCGGAGAAAGAGCTTTGAAGGATCTTCTTAGCTT
JMFS128H07+           CTCGTCTTCCTGTCTGGGAGGGTGATCCGGAGAAAGAGCTTTGAAGGATCTTCTTAGCTT
JMFS001B07+           CTCGTCTTCCTGTCTGGGAGGGTGATCCGGAGAAAGAGCTTTGAAGGATCTTCTTAGCTT
JMFS165E04+           CTCGTCTTCCTGTCTGGGAGGGTGATCCGGAGAAAGAGCTTTGAAGGATCTTCTTAGCTT
JMFS050D02+           CTCGTCTTCCTGTCTGGGAGGGTGATCCGGAGAAAGAGCTTTGAAGGATCTTCTTAGCTT
                      ____________________________________________________________
consensus             CTCGTCTTCCTGTCTGGGAGGGTGATCCGGAGAAAGAGCTTTGAAGGATCTTCTTAGCTT
 
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JMFS084B02+           TTCCATTAAAGTAGAAAGTACAGAAATGAAGTGATTATCTTTATCTGATTTTCCAAATAA
JMFS140G12+           TTCCATTAAAGTAGAAAGTACAGAAATGAAGTGATTATCTTTATCTGATTTTCCAAATAA
JMFS128H07+           TTCCATTAAAGTAGAAAGTACAGAAATGAAGTGATTATCTTTATCTGATTTTCCAAATAA
JMFS001B07+           TTCCATTAAAGTAGAAAGTACAGAAATGAAGTGATTATCTTTATCTGATTTTCCAAATAA
JMFS165E04+           TTCCATTAAAGTAGAAAGTACAGAAATGAAGTGATTATCTTTATCTGATTTTCCAAATAA
JMFS050D02+           TTCCATTAAAGTAGAAAGTACAGAAATGAAGTGATTATCTTTATCTGATTTTCCAAATAA
                      ____________________________________________________________
consensus             TTCCATTAAAGTAGAAAGTACAGAAATGAAGTGATTATCTTTATCTGATTTTCCAAATAA
 
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JMFS084B02+           AAATTAAAACTTTAATGGAGTAAATAAATAGAAATGAATATTTTAA              
JMFS140G12+           AAATTAAAACTTTAATGGAGTAAATAAATAGAAATGAATATTTTAATGGAGAGTATTGGA
JMFS128H07+           AAATTAAAACTTTAATGGAGTAAATAAATAGAAATGAATATTTTAATGGAGAGTATTGGA
JMFS001B07+           AAATTAAAACTTTAATGGAGTAAATAAATAGAAATGAATATTTTAATGGAGAGTATTGGA
JMFS165E04+           AAATTAAAACTTTAATGGAGTAAATAAATAGAAATGAATATTTTAATGGAGAGTATTGGA
JMFS050D02+           AAATTAAAACTTTAATGGAGTAAATAAATAGAAATGAATATTTTAATGGAGAGTATTGGA
                      ____________________________________________________________
consensus             AAATTAAAACTTTAATGGAGTAAATAAATAGAAATGAATATTTTAATGGAGAGTATTGGA
 
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JMFS140G12+           ATGCGGCGAAGGCGAAGAAA                                        
JMFS128H07+           ATGCGGCGAAGGCGAAGAAATG                                      
JMFS001B07+           ATGCGGCGAAGGCGAAGAAATG                                      
JMFS165E04+           ATGCGGCGAAGGCGAAGAAATGATCTATGGGGTTTGGTAAGTATTGAACTGAGTGTTCAG
JMFS050D02+           ATGCGGCGAAGGCGAAGAAATGATCTATGGGGTTTGGTAAGTATTGAACTGAGTGTTCAG
                      ____________________________________________________________
consensus             ATGCGGCGAAGGCGAAGAAATGATCTATGGGGTTTGGTAAGTATTGAACTGAGTGTTCAG
 
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JMFS165E04+           ACTGGGATTTTGAGTGCTTTGAAAGCGGAGGAGACAGAGATATGATACC           
JMFS050D02+           ACTGGGATTTTGAGTGCTTTGAAAGCGGAGGAGACAGAGATATGATACCTTCTTGGCTTC
                      ____________________________________________________________
consensus             ACTGGGATTTTGAGTGCTTTGAAAGCGGAGGAGACAGAGATATGATACCTTCTTGGCTTC