Contig 007588:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014J23Sequence552007588 (5)ref|XP_009765456.1|5e-20PREDICTED: putative ion channel POLLUX-like 2 isoform X1 [Nicotiana sylvestris]789012270 (4)ref|XP_009612696.1|6e-118PREDICTED: putative ion channel POLLUX-like 2 isoform X3 [Nicotiana tomentosifo
JMFS027G07Sequence595007588 (5)ref|XP_009612694.1|5e-04PREDICTED: putative ion channel POLLUX-like 2 isoform X1 [Nicotiana tomentosifo
JMSF003D06Sequence332007588 (5)ref|XP_009765457.1|5e-09PREDICTED: putative ion channel POLLUX-like 2 isoform X2 [Nicotiana sylvestris]756012270 (4)ref|XP_009612696.1|8e-128PREDICTED: putative ion channel POLLUX-like 2 isoform X3 [Nicotiana tomentosifo
JMSF012N16Sequence491007588 (5)ref|XP_009765456.1|4e-12PREDICTED: putative ion channel POLLUX-like 2 isoform X1 [Nicotiana sylvestris]742012270 (4)ref|XP_009612696.1|2e-126PREDICTED: putative ion channel POLLUX-like 2 isoform X3 [Nicotiana tomentosifo
JMSF042D06Sequence822007588 (5)ref|XP_009765456.1|2e-61PREDICTED: putative ion channel POLLUX-like 2 isoform X1 [Nicotiana sylvestris]696012270 (4)ref|XP_009612696.1|1e-110PREDICTED: putative ion channel POLLUX-like 2 isoform X3 [Nicotiana tomentosifo

Alignment

This contig is upended


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JMSF042D06+                                                 CCCATATAGCGAGCACAAAGCC
                      ____________________________________________________________
consensus                                                   CCCATATAGCGAGCACAAAGCC
 
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JMSF042D06+           CATCACACGTTCAATCCGTGTTCTTTGTTTTAGATGAGTAGATGATGAACACAGGCATGC
                      ____________________________________________________________
consensus             CATCACACGTTCAATCCGTGTTCTTTGTTTTAGATGAGTAGATGATGAACACAGGCATGC
 
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JMSF042D06+           CCAGGCCTCCCAAAAGCAATCCTCAAGAGAATGTGCATTGGTCCTGAACTTAAAGAAGAG
                      ____________________________________________________________
consensus             CCAGGCCTCCCAAAAGCAATCCTCAAGAGAATGTGCATTGGTCCTGAACTTAAAGAAGAG
 
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JMSF042D06+           GAAGCCACCAATCAGAACAAATACAAAGCATGAAACAAGAAGCACAACAAAAAACATGGC
                      ____________________________________________________________
consensus             GAAGCCACCAATCAGAACAAATACAAAGCATGAAACAAGAAGCACAACAAAAAACATGGC
 
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JMSF042D06+           AACATTTTTCTCAAGTTGTATGTTGAATAAATATATTAGCCGTGAAAAACTCCATTTGAT
                      ____________________________________________________________
consensus             AACATTTTTCTCAAGTTGTATGTTGAATAAATATATTAGCCGTGAAAAACTCCATTTGAT
 
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JMFF014J23+                TCAATGAAGGCAAGGACACTTCCAATCCCAAGAGGTGTTGGTTTGTTCAAGGAAT
JMSF042D06+           ATCTTTCAATGAAGGCAAGGACACTTCCAAT-CCAAGAGGTGTTGGTTTGTTCAAGGAAT
                      ____________________________________________________________
consensus             ATCTTTCAATGAAGGCAAGGACACTTCCAATCCCAAGAGGTGTTGGTTTGTTCAAGGAAT
 
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JMFF014J23+           TAGATATACAAGCAAAAGGCAAACTCTGTGCACCAAATGCTTTAATCGCATAGAAGAATA
JMSF012N16+                   CAAGCAAAAGGCAAACTCTGTGCACCAAATGCTTTAATCGCATAGAAGAATA
JMSF003D06+                   CAAGCAAAAGGCAAACTCTGTGCACCAAATGCTTTAATCGCATAGAAGAATA
JMSF042D06+           TAGATATACAAGCAAAAGGCAAACTCTGTGCACCAAATGCTTTAATCGCATAGAAGAATA
                      ____________________________________________________________
consensus             TAGATATACAAGCAAAAGGCAAACTCTGTGCACCAAATGCTTTAATCGCATAGAAGAATA
 
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JMFF014J23+           GTTCTCGGAATACGGTTGTCTTCATATTCATAGAATCTAGTTGTATCAATCTACAGGCGA
JMSF012N16+           GTTCTCGGAATACGGTTGTCTTCATATTCATAGAATCTAGTTGTATCAATCTACAGGCGA
JMSF003D06+           GTTCTCGGAATACGGTTGTCTTCATATTCATAGAATCTAGTTGTATCAATCTACAGGCGA
JMSF042D06+           GTTCTCGGAATACGGTTGTCTTCATATTCATAGAATCTAGTTGTATCAATCTACAGGCGA
JMFS027G07+                CGGAATACGGTTGTCTTCATATTCATAGAATCTAGTTGTATCAATCTACAGGCGA
                      ____________________________________________________________
consensus             GTTCTCGGAATACGGTTGTCTTCATATTCATAGAATCTAGTTGTATCAATCTACAGGCGA
 
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JMFF014J23+           AATATGATGGCAATGCTGCTACTATGTGTCTTACGGGGGAGCCCTGAGAATTACTATTAA
JMSF012N16+           AATATGATGGCAATGCTGCTACTATGTGTCTTACGGGGGAGCCCTGAGAATTACTATTAA
JMSF003D06+           AATATGATGGCAATGCTGCTACTATGTGTCTTACGGGGGAGCCCTGAGAATTACTATTAA
JMSF042D06+           AATATGATGGCAATGCTGCTACTATGTGTCTTACGGGGGAGCCCTGAGAATTACTATTAA
JMFS027G07+           AATATGATGGCAATGCTGCTACTATGTGTCTTACGGGGGAGCCCTGAGAATTACTATTAA
                      ____________________________________________________________
consensus             AATATGATGGCAATGCTGCTACTATGTGTCTTACGGGGGAGCCCTGAGAATTACTATTAA
 
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JMFF014J23+           GATCCATTTTCCGTAGCAAAGAATTGAAATATCCCAAGGCATTCTTAGTCAGCAAGCAAT
JMSF012N16+           GATCCATTTTCCGTAGCAAAGAATTGAAATATCCCAAGGCATTCTTAGTCAGCAAGCAAT
JMSF003D06+           GATCCATTTTCCGTAGCAAAGAATTGAAATATCCCAAGGCATTCTTAGTCAGCAAGCAAT
JMSF042D06+           GATCCATTTTCCGTAGCAAAGAATTGAAATATCCCAAGGCATTCTTAGTCAGCAAGCAAT
JMFS027G07+           GATCCATTTTCCGTAGCAAAGAATTGAAATATCCCAAGGCATTCTTAGTCAGCAAGCAAT
                      ____________________________________________________________
consensus             GATCCATTTTCCGTAGCAAAGAATTGAAATATCCCAAGGCATTCTTAGTCAGCAAGCAAT
 
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JMFF014J23+           CCAACTTTCTGCATTTCATCTGATAATTGATATTGGTCCCATTGTTGCTTATTGGTGAGA
JMSF012N16+           CCAACTTTCTGCATTTCATCTGATAATTGATATTGGTCCCATTGTTGCTTATTGGTGAGA
JMSF003D06+           CCAACTTTCTGCATTTCATCTGATAATTGATATTGGTCCCATTGTTGCTTATTGGTGAGA
JMSF042D06+           CCAACTTTCTGCATTTCATCTGATAATTGATATTGGTCCCATTGTTGCTTATTGGTGAGA
JMFS027G07+           CCAACTTTCTGCATTTCATCTGATAATTGATATTGGTCCCATTGTTGCTTATTGGTGAGA
                      ____________________________________________________________
consensus             CCAACTTTCTGCATTTCATCTGATAATTGATATTGGTCCCATTGTTGCTTATTGGTGAGA
 
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JMFF014J23+           AAGACTTCCGTAAAGCTGAAGGTGGGAAGCACCGGCAGGGGCATTGCAACGACTTTCTCA
JMSF012N16+           AAGACTTCCGTAAAGCTGAAGGTGGGAAGCACCGGCAGGGGCATTGCAACGACTTTCTCA
JMSF003D06+           AAGACTTCCGTAAAGCTGAAGGTGGGAAGCACCGGC                        
JMSF042D06+           AAGACTTCCGTAAAGCTGAAGGTGGGAAGCACCGGCAGGGGCATTGCAACGACTTTCTCA
JMFS027G07+           AAGACTTCCGTAAAGCTGAAGGTGGGAAGCACCGGCAGGGGCATTGCAACGACTTTCTCA
                      ____________________________________________________________
consensus             AAGACTTCCGTAAAGCTGAAGGTGGGAAGCACCGGCAGGGGCATTGCAACGACTTTCTCA
 
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JMFF014J23+           TAGAAGGAGATATCTGATAGAATCTTGGAGTGGGTGGTGTGGGCATCCATGTCGTGGGCG
JMSF012N16+           TAGAAGGAGATATCTGATAGAATCTTGGAGTGGGTGGTGTGGGCATCCATGTCGTGGGCG
JMSF042D06+           TAGAAGGAGATATCTGATAGAATCTTGGAGTGGGTGGTGTGGGCATCCATGTCGTGGGCG
JMFS027G07+           TAGAAGGAGATATCTGATAGAATCTTGGAGTGGGTGGTGTGGGCATCCATGTCGTGGGCG
                      ____________________________________________________________
consensus             TAGAAGGAGATATCTGATAGAATCTTGGAGTGGGTGGTGTGGGCATCCATGTCGTGGGCG
 
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JMFF014J23+           GGCAATGCAATTGAATCATTCCTCTGTTTCACCTTTTTCCCCCCTTCCTCAGAAATTAAT
JMSF012N16+           GGCAATGCAATTGAATCATTCCTCTGTTTCACCTTTTTCCCCCCTTCCTCAGAAATTAAT
JMSF042D06+           GGCAATGCAATTGAATCATTCCTCTGTTTCACCTTTTTCCCCCCTTCCTCAGAAATTAAT
JMFS027G07+           GGCAATGCAATTGAATCATTCCTCTGTTTCACCTTTTTCCCCCCTTCCTCAGAAATTAAT
                      ____________________________________________________________
consensus             GGCAATGCAATTGAATCATTCCTCTGTTTCACCTTTTTCCCCCCTTCCTCAGAAATTAAT
 
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JMFF014J23+           TGAAAATACCCACTCAC                                           
JMSF012N16+           TGAAAATACCCATTCAC                                           
JMSF042D06+           TGAAAATACCCATTCAC                                           
JMFS027G07+           TGAAAATACCCATTCACTAGGGGCGAAGATTTCGAGGTTTCAGTCTATATATACACAATT
                      ____________________________________________________________
consensus             TGAAAATACCCATTCACTAGGGGCGAAGATTTCGAGGTTTCAGTCTATATATACACAATT
 
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JMFS027G07+           GTTCCATATTAAAAACATTTTTTTAAAAAATAAATAAAGAAAACTGTATACAAAGAGTGT
                      ____________________________________________________________
consensus             GTTCCATATTAAAAACATTTTTTTAAAAAATAAATAAAGAAAACTGTATACAAAGAGTGT
 
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JMFS027G07+           TCTTTCTTGTTAAACCAAAACAAACAAACAAACAAACAAAAGTTTAAAATTTTTTAATCG
                      ____________________________________________________________
consensus             TCTTTCTTGTTAAACCAAAACAAACAAACAAACAAACAAAAGTTTAAAATTTTTTAATCG