Contig 007578:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS013F12Sequence562007578 (2)
JMSF027C20Sequence138007578 (2)372009342 (3)ref|XP_002301970.1|1e-22hypothetical protein POPTR_0002s02220g [Populus trichocarpa] gb|EEE81243.1| hypo

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS013F12+ CTCTCCCCTCATTTTTAGCCCT
                      ____________________________________________________________
consensus CTCTCCCCTCATTTTTAGCCCT
 
. : . : . : . : . : . :
JMFS013F12+ TTGGCCATTGGGGATGCACTAAGGCACACAAACAAGATAGCTCTGGGAATACACTGCACA
                      ____________________________________________________________
consensus TTGGCCATTGGGGATGCACTAAGGCACACAAACAAGATAGCTCTGGGAATACACTGCACA
 
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JMFS013F12+ GATTTTTTCCCCTAGACCATAAGAAGTTATGTCTATCTATGTGCGCAAACAAGAATTACC
                      ____________________________________________________________
consensus GATTTTTTCCCCTAGACCATAAGAAGTTATGTCTATCTATGTGCGCAAACAAGAATTACC
 
. : . : . : . : . : . :
JMFS013F12+ CAACATAAAAGCAACATTAATAAGGAAACACAGGTATACATGGGATAAATGAACAATCGG
                      ____________________________________________________________
consensus CAACATAAAAGCAACATTAATAAGGAAACACAGGTATACATGGGATAAATGAACAATCGG
 
. : . : . : . : . : . :
JMFS013F12+ AAACAAGAATTTGGCAGAGCATTCACAAATCAGAAAGAACACTAACAAATCAAACAAACC
                      ____________________________________________________________
consensus AAACAAGAATTTGGCAGAGCATTCACAAATCAGAAAGAACACTAACAAATCAAACAAACC
 
. : . : . : . : . : . :
JMFS013F12+ TAAAGCAATTTCATCCATAGAAGACTCAATGCAAATAATGCATGCACTACAAAATGCGTC
                      ____________________________________________________________
consensus TAAAGCAATTTCATCCATAGAAGACTCAATGCAAATAATGCATGCACTACAAAATGCGTC
 
. : . : . : . : . : . :
JMSF027C20+ TTTGGAATGGGGTTGAAAGC
JMFS013F12+ TAAAAATCAACATAAATTAAAAAGAATGATTTTTTTTTTTTTTGGAATGGGGTTGAAAGC
                      ____________________________________________________________
consensus TAAAAATCAACATAAATTAAAAAGAATGATTTTTTTTTTTTTTGGAATGGGGTTGAAAGC
 
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JMSF027C20+ CCGCTCACCCATCATCGCCGATGAAAGGAGGCTCAGGCGGCGGGCAGTCTTCATCGCGGT
JMFS013F12+ CCGCTCACCCATCATCGCCGATGAAAGGAGGCTCAGGCGGCGGGCAGTCTTCATCGCGGT
                      ____________________________________________________________
consensus CCGCTCACCCATCATCGCCGATGAAAGGAGGCTCAGGCGGCGGGCAGTCTTCATCGCGGT
 
. : . : . : . : . : . :
JMSF027C20+ AAAGCGGAGGAGAAGGGCTACAGGAAAATGGGAGCTCAGACGGATAGCCGCCTTCAAC
JMFS013F12+ AAAGCGGAGGAGAAGGGCTACAGGAAAATGGGAGCTCAGACGGATAGCCGCCTTCAACCC
                      ____________________________________________________________
consensus AAAGCGGAGGAGAAGGGCTACAGGAAAATGGGAGCTCAGACGGATAGCCGCCTTCAACCC
 
. : . : . : . : . : . :
JMFS013F12+ CGGAGATGACCGAAGCGGGCGGCTCTCGCCCGTCGATTCCCAAACCCTACCGCCGATCGC
                      ____________________________________________________________
consensus CGGAGATGACCGAAGCGGGCGGCTCTCGCCCGTCGATTCCCAAACCCTACCGCCGATCGC