| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS008H01 | Sequence | 611 | 007574 (7) | ref|XP_007045482.1| | 1e-80 | CHASE domain containing histidine kinase protein isoform 2 [Theobroma cacao] gb | |||||
| JMFS009D05 | Sequence | 619 | 007574 (7) | ref|XP_010648962.1| | 8e-27 | PREDICTED: histidine kinase 4 isoform X2 [Vitis vinifera] | |||||
| JMFS012C09 | Sequence | 607 | 007574 (7) | ref|XP_011070524.1| | 1e-108 | PREDICTED: histidine kinase 4 [Sesamum indicum] | |||||
| JMFS023H01 | Sequence | 488 | 007574 (7) | ref|XP_010648962.1| | 2e-20 | PREDICTED: histidine kinase 4 isoform X2 [Vitis vinifera] | |||||
| JMFS052D02 | Sequence | 601 | 007574 (7) | ref|XP_011070524.1| | 4e-114 | PREDICTED: histidine kinase 4 [Sesamum indicum] | |||||
| JMFS098A09 | Sequence | 612 | 007574 (7) | ref|XP_010648962.1| | 2e-47 | PREDICTED: histidine kinase 4 isoform X2 [Vitis vinifera] | |||||
| JMSF014A08 | Sequence | 434 | 007574 (7) | ref|XP_007045481.1| | 1e-05 | CHASE domain containing histidine kinase protein isoform 1 [Theobroma cacao] gb | 782 | 024505 | dbj|BAL43559.1| | 7e-65 | cytokinin receptor histidine protein kinase [Petunia x hybrida] |
This contig is upended
. : . : . : . : . : . :
JMFS052D02+ GGTAGGAGC
____________________________________________________________
consensus GGTAGGAGC
. : . : . : . : . : . :
JMFS052D02+ CTTCTGAAGATACCTGCATATCATCTCGTGCTTACGAAATGGATCGCCAAAATCAAGCTT
____________________________________________________________
consensus CTTCTGAAGATACCTGCATATCATCTCGTGCTTACGAAATGGATCGCCAAAATCAAGCTT
. : . : . : . : . : . :
JMFS052D02+ GCTCACGTGTGTCAGGGACAGGTCGCCCTCTTGGCCCGGTTGTCCATACATGACTAAAGG
____________________________________________________________
consensus GCTCACGTGTGTCAGGGACAGGTCGCCCTCTTGGCCCGGTTGTCCATACATGACTAAAGG
. : . : . : . : . : . :
JMFS052D02+ ATCAGAAGCATTGGTAATGTCGTAAACATTCACGACGATCGCTTGGTTTCCGGCAAGTTG
____________________________________________________________
consensus ATCAGAAGCATTGGTAATGTCGTAAACATTCACGACGATCGCTTGGTTTCCGGCAAGTTG
. : . : . : . : . : . :
JMFS052D02+ CCCGAGCAGGTTTTCAACTAGAGACTCGACATCAAAGGCCCCGCCAAGGTATCCTGCAGT
____________________________________________________________
consensus CCCGAGCAGGTTTTCAACTAGAGACTCGACATCAAAGGCCCCGCCAAGGTATCCTGCAGT
. : . : . : . : . : . :
JMFS052D02+ TGCTTCGATCCTATCCTGCTGTGACGGGTTAGCTGGCAGCATGGATTTGTAAACCGGAAA
____________________________________________________________
consensus TGCTTCGATCCTATCCTGCTGTGACGGGTTAGCTGGCAGCATGGATTTGTAAACCGGAAA
. : . : . : . : . : . :
JMFS052D02+ TGTCAAAACGACACCAAGGTGATTAGAGTCTAGAAGCCTGAAGGGACTTGTAAGAACAGC
JMFS012C09+ TGTCAAAACGACACCAAGGTGATTAGAGTCTAGAAGCCTGAAGGGACTTGTAAGAACAGC
____________________________________________________________
consensus TGTCAAAACGACACCAAGGTGATTAGAGTCTAGAAGCCTGAAGGGACTTGTAAGAACAGC
. : . : . : . : . : . :
JMFS052D02+ CTTCCCAGTAGCCCTAGCCCTCAAGATGTTTTCCCGGTCCTCCTCCCCTGACATCATGTC
JMFS012C09+ CTTCCCAGTAGCCCTAGCCCTCAAGATGTTTTCCCGGTCCTCCTCCCCTGACATCATGTC
____________________________________________________________
consensus CTTCCCAGTAGCCCTAGCCCTCAAGATGTTTTCCCGGTCCTCCTCCCCTGACATCATGTC
. : . : . : . : . : . :
JMFS052D02+ GATCGACTTGAGGTAAGAAACGGTTTCTTGTGCGAGTATGACCGGGGCATACTCGTCCCT
JMFS012C09+ GATCGACTTGAGGTAAGAAACGGTTTCTTGTGCGAGTATGACCGGGGCATACTCGTCCCT
JMFS008H01+ CGAGTATGACCGGGGCATACTCGTCCCT
____________________________________________________________
consensus GATCGACTTGAGGTAAGAAACGGTTTCTTGTGCGAGTATGACCGGGGCATACTCGTCCCT
. : . : . : . : . : . :
JMFS052D02+ GATCGGTGAAGGCTCTTTATCCATCGTTCGAATAGTCCACCCGTGCTGATCCTCGAAGCT
JMFS012C09+ GATCGGTGAAGGCTCTTTATCCATCGTTCGAATAGTCCACCCGTGCTGATCCTCGAAGCT
JMFS008H01+ GATCGGTGAAGGCTCTTTATCCATCGTTCGAATAGTCCACCCGTGCTGATCCTCGAAGCT
____________________________________________________________
consensus GATCGGTGAAGGCTCTTTATCCATCGTTCGAATAGTCCACCCGTGCTGATCCTCGAAGCT
. : . : . : . : . : . :
JMFS052D02+ CCCCCGCTGCGAATTAAGAACTCTCTCCGCATAGGCTTCCCCGCTCAATAAA
JMFS012C09+ CCCCCGCTGCGAATTAAGAACTCTCTCCGCATAGGCTACCCCGCTCAATAAAGGCCTCTC
JMFS008H01+ CCCCCGCTGCGAATTAAGAACTCTCTCCGCATAGGCTACCCCGCTCAATAAAGGCCTCTC
____________________________________________________________
consensus CCCCCGCTGCGAATTAAGAACTCTCTCCGCATAGGCTACCCCGCTCAATAAAGGCCTCTC
. : . : . : . : . : . :
JMFS012C09+ GAACGCTGTTCTAGCAGTGTATTCAGCGAATGTTTCCTTATCAATGGCAGAAGGGGTCTT
JMFS008H01+ GAACGCTGTTCTAGCAGTGTATTCAGCGAATGTTTCCTTATCAATGGCAGAAGGGGTCTT
JMFS098A09+ CTAGCAGTGTATTCAGCGAATGTTTCCTTATCAATGGCAGAAGGGGTCTT
____________________________________________________________
consensus GAACGCTGTTCTAGCAGTGTATTCAGCGAATGTTTCCTTATCAATGGCAGAAGGGGTCTT
. : . : . : . : . : . :
JMFS012C09+ GTAGTAATGGAAAGTGGAGACAAGGATGGCAAGGGCATGAACATGGTTAACACTGACACT
JMFS008H01+ GTAGTAATGGAAAGTGGAGACAAGGATGGCAAGGGCATGAACATGGTTAACACTGACACT
JMFS098A09+ GTAGTAATGGAAAGTGGAGACAAGGATGGCAAGGGCATGAACATGGTTAACACTGACACT
JMFS009D05+ CATGGTTAACACTGACACT
____________________________________________________________
consensus GTAGTAATGGAAAGTGGAGACAAGGATGGCAAGGGCATGAACATGGTTAACACTGACACT
. : . : . : . : . : . :
JMFS012C09+ GAATTGATCTTGCAACATCCTAGCCCTCTGATCACACATGCTCACCAAAGCCTCTTTCCT
JMFS008H01+ GAATTGATCTTGCAACATCCTAGCCCTCTGATCACACATGCTCACCAAAGCCTCTTTCCT
JMFS098A09+ GAATTGATCTTGCAACATCCTAGCCCTCTGATCACACATGCTCACCAAAGCCTCTTTCCT
JMFS023H01+ TGCAACATCCTAGCCCTCTGATCACACATGCTCACCAAAGCCTCTTTCCT
JMFS009D05+ GAATTGATCTTGCAACATCCTAGCCCTCTGATCACACATGCTCACCAAAGCCTCTTTCCT
____________________________________________________________
consensus GAATTGATCTTGCAACATCCTAGCCCTCTGATCACACATGCTCACCAAAGCCTCTTTCCT
. : . : . : . : . : . :
JMFS012C09+ CTTCTCCTTGTTCATAGCATCCAGAGAATTGAATATCACACTACTGATAAAGAACATGAG
JMFS008H01+ CTTCTCCTTGTTCATAGCATCCAGAGAATTGAATATCACACTACTGATAAAGAACATGAG
JMFS098A09+ CTTCTCCTTGTTCATAGCATCCAGAGAATTGAATATCACACTACTGATAAAGAACATGAG
JMFS023H01+ CTTCTCCTTGTTCATAGCATCCAGAGAATTGAATATCACACTACTGATAAGGAACATGAG
JMSF014A08+ TGATAAAGAACATGAG
JMFS009D05+ CTTCTCCTTGTTCATAGCATCCAGAGAATTGAATATCACACTACTGATAAAGAACATGAG
____________________________________________________________
consensus CTTCTCCTTGTTCATAGCATCCAGAGAATTGAATATCACACTACTGATAAAGAACATGAG
. : . : . : . : . : . :
JMFS012C09+ AAGAATCCAAAAAGCCAACAACTGTGGGAGCCTATTCCTGTGGATCAATGTGTACTTCCT
JMFS008H01+ AAGAATCCAAAAAGCCAACAACTGTGGGAGCCTATTCCTGTGGATCAATGTGTACTTCCT
JMFS098A09+ AAGAATCCAAAAAGCCAACAACTGTGGGAGCCTATTCCTGTGGATCAATGTGTACTTCCT
JMFS023H01+ AAGAATCCAAAAAGCCAACAACTGTGGGAGCCTATTCCTGTGGATCAATGTGTACTTCCT
JMSF014A08+ AAGAATCCAAAAAGCCAACAACTGTGGGAGCCTATTCCTGTGGATCAATGTGTACTTCCT
JMFS009D05+ AAGAATCCAAAAAGCCAACAACTGTGGGAGCCTATTCCTGTGGATCAATGTGTACTTCCT
____________________________________________________________
consensus AAGAATCCAAAAAGCCAACAACTGTGGGAGCCTATTCCTGTGGATCAATGTGTACTTCCT
. : . : . : . : . : . :
JMFS012C09+ CTTACTG
JMFS008H01+ CTTACTGCTCAATTGCTCCCCCAACCTCATAGCCACCGTGTGGTGGTGCATCTTCTGACC
JMFS098A09+ CTTACTGCTCAATTGCTCCCCCAACCTCATAGCCACCGTGTGGTGGTGCATCTTCTGACC
JMFS023H01+ CTTACTGCTCAATTGCTCCCCCAACCTCATAGCCACCGTGTGGTGGTGCATCTTCTGACC
JMSF014A08+ CTTACTGCTCAATTGCTCCCCCAACCTCATAGCCACCGTGTGGTGGTGCATCTTCTGACC
JMFS009D05+ CTTACTGCTCAATTGCTCCCCCAACCTCATAGCCACCGTGTGGTGGTGCATCTTCTGACC
____________________________________________________________
consensus CTTACTGCTCAATTGCTCCCCCAACCTCATAGCCACCGTGTGGTGGTGCATCTTCTGACC
. : . : . : . : . : . :
JMFS008H01+ CATCAACACTAATCTCTCCTACACCTCCAATTCCTCTCCTCACCTCATGGGGTTGAAGGC
JMFS098A09+ CATCAACACTAATCTCTCCTACACCTCCAATTCCTCTCCTCACCTCATGGGGTTGAAGGC
JMFS023H01+ CATCAACACTAATCTCTCCTACACCTCCAATTCCTCTCCTCACCTCATGGGGTTGAAGGC
JMSF014A08+ CATCAACACTAATCTCTCCTACACCTCCAATTCCTCTCCTCACCTCATGGGGTTGAAGGC
JMFS009D05+ CATCAACACTAATCTCTCCTACACCTCCAATTCCTCTCCTCACCTCATGGGGTTGAAGGC
____________________________________________________________
consensus CATCAACACTAATCTCTCCTACACCTCCAATTCCTCTCCTCACCTCATGGGGTTGAAGGC
. : . : . : . : . : . :
JMFS008H01+ ATGCCTGCAGGTCCCTCAAAAGCAGCAAAAAACCCAGACTCCA
JMFS098A09+ ATGCCTGCAGGTCCCTCAAAAGCAGCAAAAAACCCAGACTCCAAAGAAGAGGAAAATGTA
JMFS023H01+ ATGCCTGCAGGTCCCTCAAAAGCAGCAAAAAACCCAGACTCCAAAGAAGAGGAAAATGTA
JMSF014A08+ ATGCCTGCAGGTCCCTCAAAAGCAGCAAAAAACCCAGACTCCAAAGAAGAGGAAAATGTA
JMFS009D05+ ATGCCTGCAGGTCCCTCAAAAGCAGCAAAAAACCCAGACTCCAAAGAAGAGGAAAATGTA
____________________________________________________________
consensus ATGCCTGCAGGTCCCTCAAAAGCAGCAAAAAACCCAGACTCCAAAGAAGAGGAAAATGTA
. : . : . : . : . : . :
JMFS098A09+ ATTTAAAGAAGAAAGCTCCCCTTTTTAGCCTTCACTTTGCCTG
JMFS023H01+ ATTTAAAGAAGAAAGCTCCCCTTTTTAGCCTTCACTTTGCCTG
JMSF014A08+ ATTTAAAGAAGAAAGCTCCCCTTTTTAGCCTTCATTTTGCCTGGGTGTGGAAGGATGTAA
JMFS009D05+ ATTTAAAGAAGAAAGCTCCCCTTTTTAGCCTTCACTTTGCCTGGGTGTGGAAGGATGTAA
____________________________________________________________
consensus ATTTAAAGAAGAAAGCTCCCCTTTTTAGCCTTCACTTTGCCTGGGTGTGGAAGGATGTAA
. : . : . : . : . : . :
JMSF014A08+ GAGTGCAGACAAAGAACAGCACGTTTGCTG
JMFS009D05+ GAGTGCAGACAAAGAACAGCACGTTTGCTGCCCAACACAACATAAAATATTACATTTGAC
____________________________________________________________
consensus GAGTGCAGACAAAGAACAGCACGTTTGCTGCCCAACACAACATAAAATATTACATTTGAC
. : . : . : . : . : . :
JMFS009D05+ CAGCGAAGCAGAGAAAGAACAATGAGGGAAGGAAGGGAGGGAGAAAAGCAAAGATTAAAC
____________________________________________________________
consensus CAGCGAAGCAGAGAAAGAACAATGAGGGAAGGAAGGGAGGGAGAAAAGCAAAGATTAAAC
. : . : . : . : . : . :
JMFS009D05+ CTGTTTTTTAAGTTCTTTGTGGGAACAAATACAATGAACTGTGGGTTGGGTGTTTGTTGA
____________________________________________________________
consensus CTGTTTTTTAAGTTCTTTGTGGGAACAAATACAATGAACTGTGGGTTGGGTGTTTGTTGA